Wall clock time and date at job start Tue Mar 31 2020 06:56:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35895 * 117.00121 * 2 1 4 4 C 1.38745 * 120.05878 * 359.97438 * 3 2 1 5 5 C 1.38121 * 119.94710 * 180.27673 * 4 3 2 6 6 C 1.38290 * 120.05434 * 359.49153 * 5 4 3 7 7 S 1.76195 * 119.94674 * 180.25278 * 6 5 4 8 8 O 1.42094 * 106.40233 * 23.79818 * 7 6 5 9 9 O 1.42104 * 106.40341 * 156.71324 * 7 6 5 10 10 N 1.65600 * 107.22207 * 270.25629 * 7 6 5 11 11 C 1.46499 * 120.00060 * 270.00105 * 10 7 6 12 12 C 1.36935 * 120.00000 * 89.99556 * 10 7 6 13 13 H 1.08002 * 119.99731 * 20.62395 * 12 10 7 14 14 C 1.38809 * 120.00079 * 200.61723 * 12 10 7 15 15 N 1.31616 * 120.00193 * 14.76650 * 14 12 10 16 16 Si 1.86801 * 119.99979 * 194.76204 * 14 12 10 17 17 H 1.48503 * 109.46873 * 85.00770 * 16 14 12 18 18 H 1.48498 * 109.47423 * 205.00790 * 16 14 12 19 19 H 1.48499 * 109.47409 * 325.00969 * 16 14 12 20 20 C 1.38243 * 120.10969 * 0.51015 * 6 5 4 21 21 C 1.38169 * 120.05437 * 359.74655 * 20 6 5 22 22 C 1.50700 * 120.02599 * 179.97438 * 21 20 6 23 23 H 1.09003 * 109.46735 * 300.00595 * 1 2 3 24 24 H 1.08997 * 109.46640 * 59.99857 * 1 2 3 25 25 H 1.08995 * 109.47679 * 179.97438 * 1 2 3 26 26 H 1.08006 * 120.02988 * 0.02562 * 4 3 2 27 27 H 1.08004 * 119.97752 * 179.72811 * 5 4 3 28 28 H 1.08997 * 109.47243 * 94.99571 * 11 10 7 29 29 H 1.08992 * 109.47177 * 214.99859 * 11 10 7 30 30 H 1.08999 * 109.46832 * 334.99861 * 11 10 7 31 31 H 0.96994 * 120.00028 * 180.02562 * 15 14 12 32 32 H 1.08005 * 119.97752 * 179.76130 * 20 6 5 33 33 H 1.08999 * 109.47673 * 270.01904 * 22 21 20 34 34 H 1.08999 * 109.47264 * 30.01933 * 22 21 20 35 35 H 1.08999 * 109.47090 * 150.02128 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2916 2.3752 -0.0005 5 6 1.9211 3.6046 -0.0063 6 6 3.3021 3.6756 -0.0009 7 16 4.1021 5.2455 -0.0016 8 8 3.1709 6.1707 0.5424 9 8 5.3978 5.0359 0.5430 10 7 4.3248 5.6817 -1.5835 11 6 5.5537 5.2985 -2.2830 12 6 3.3602 6.4004 -2.2379 13 1 2.6308 6.9632 -1.6744 14 6 3.3201 6.4056 -3.6254 15 7 4.0037 5.5109 -4.3069 16 14 2.2956 7.6823 -4.5253 17 1 3.0871 8.9286 -4.6856 18 1 1.9178 7.1604 -5.8632 19 1 1.0676 7.9731 -3.7426 20 6 4.0561 2.5169 -0.0004 21 6 3.4312 1.2847 0.0000 22 6 4.2537 0.0220 0.0000 23 1 -0.3633 0.5140 0.8900 24 1 -0.3632 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 0.2129 2.3204 -0.0005 27 1 1.3343 4.5114 -0.0112 28 1 5.3850 4.3729 -2.8333 29 1 5.8371 6.0883 -2.9787 30 1 6.3533 5.1493 -1.5574 31 1 3.9759 5.5148 -5.2765 32 1 5.1346 2.5749 -0.0001 33 1 4.4521 -0.2826 -1.0276 34 1 5.1978 0.2033 0.5138 35 1 3.7063 -0.7682 0.5138 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057539708.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:10 Heat of formation + Delta-G solvation = -79.402903 kcal Electronic energy + Delta-G solvation = -20997.751726 eV Core-core repulsion = 17702.697889 eV Total energy + Delta-G solvation = -3295.053837 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.087 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.96707 -37.14494 -35.86309 -35.63734 -34.44375 -32.54004 -31.45860 -29.91448 -27.57995 -26.48282 -26.34029 -23.50545 -22.09784 -21.46989 -18.40167 -17.81574 -17.21046 -16.59099 -16.19426 -15.98365 -15.72258 -14.63990 -14.35808 -14.25369 -13.71502 -13.37133 -13.20870 -12.97529 -12.78243 -12.49049 -11.99624 -11.97855 -11.81226 -11.67758 -11.43016 -11.08164 -11.03965 -10.96065 -10.78121 -10.63242 -10.55295 -10.22928 -10.13375 -9.77727 -9.28668 -8.50383 -8.14438 -7.95429 -6.53359 -4.01038 1.44807 1.71250 1.82642 3.11933 3.16381 3.20272 3.32908 3.87076 4.02757 4.53095 4.79530 4.94312 5.02621 5.10246 5.11874 5.15266 5.39336 5.49991 5.64323 5.66782 5.84455 5.87825 6.01924 6.16173 6.37202 6.41858 6.56361 6.62828 6.81523 6.87233 7.08251 7.11025 7.26917 7.44466 7.54937 8.28740 8.68279 9.13568 10.43624 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.017457 B = 0.006330 C = 0.005604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.581050 B = 4422.101762 C = 4995.279353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.317 6.317 3 C 0.151 3.849 4 C -0.230 4.230 5 C 0.011 3.989 6 C -0.685 4.685 7 S 2.552 3.448 8 O -0.986 6.986 9 O -1.001 7.001 10 N -0.810 5.810 11 C 0.121 3.879 12 C -0.252 4.252 13 H 0.115 0.885 14 C 0.032 3.968 15 N -0.840 5.840 16 Si 0.927 3.073 17 H -0.272 1.272 18 H -0.282 1.282 19 H -0.265 1.265 20 C 0.005 3.995 21 C -0.145 4.145 22 C -0.100 4.100 23 H 0.054 0.946 24 H 0.056 0.944 25 H 0.097 0.903 26 H 0.127 0.873 27 H 0.136 0.864 28 H 0.053 0.947 29 H 0.072 0.928 30 H 0.045 0.955 31 H 0.273 0.727 32 H 0.137 0.863 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.024 -8.161 2.494 9.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.230 6.230 3 C 0.105 3.895 4 C -0.249 4.249 5 C -0.008 4.008 6 C -0.764 4.764 7 S 2.649 3.351 8 O -0.976 6.976 9 O -0.991 6.991 10 N -0.635 5.635 11 C -0.025 4.025 12 C -0.398 4.398 13 H 0.133 0.867 14 C -0.180 4.180 15 N -0.480 5.480 16 Si 0.753 3.247 17 H -0.197 1.197 18 H -0.207 1.207 19 H -0.189 1.189 20 C -0.015 4.015 21 C -0.146 4.146 22 C -0.157 4.157 23 H 0.073 0.927 24 H 0.074 0.926 25 H 0.115 0.885 26 H 0.144 0.856 27 H 0.153 0.847 28 H 0.072 0.928 29 H 0.091 0.909 30 H 0.063 0.937 31 H 0.084 0.916 32 H 0.154 0.846 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.604 -8.131 3.286 9.481 hybrid contribution -1.294 -0.186 -0.924 1.601 sum -4.898 -8.317 2.363 9.937 Atomic orbital electron populations 1.23036 0.78736 1.03532 1.01539 1.86027 1.21131 1.27313 1.88552 1.18916 0.91884 0.83834 0.94816 1.21266 0.99650 0.92685 1.11281 1.20655 0.93144 0.97263 0.89746 1.32299 1.04860 1.25095 1.14115 1.10267 0.73052 0.74311 0.77452 1.93349 1.63940 1.61136 1.79158 1.93341 1.39512 1.86690 1.79566 1.54012 1.21747 1.55248 1.32487 1.21315 0.83816 1.01860 0.95541 1.19950 1.11920 1.17869 0.90089 0.86712 1.25683 0.97376 0.97623 0.97314 1.70115 1.38383 1.31297 1.08200 0.85912 0.80100 0.80190 0.78508 1.19742 1.20715 1.18887 1.20601 0.99627 0.89936 0.91291 1.19314 0.90584 0.96321 1.08430 1.20559 0.98689 0.94313 1.02110 0.92709 0.92552 0.88489 0.85564 0.84657 0.92835 0.90904 0.93670 0.91617 0.84570 0.91590 0.91677 0.91632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.81 101.05 0.99 1.27 16 2 O -0.32 -4.70 9.54 -19.41 -0.19 -4.89 16 3 C 0.15 2.62 6.66 -39.22 -0.26 2.36 16 4 C -0.23 -4.00 9.04 -39.44 -0.36 -4.36 16 5 C 0.01 0.22 9.52 -39.61 -0.38 -0.15 16 6 C -0.69 -14.78 5.97 -39.56 -0.24 -15.02 16 7 S 2.55 60.53 5.65 -107.50 -0.61 59.92 16 8 O -0.99 -25.24 16.07 -57.17 -0.92 -26.16 16 9 O -1.00 -24.75 15.83 -57.17 -0.91 -25.66 16 10 N -0.81 -19.69 3.31 -66.69 -0.22 -19.91 16 11 C 0.12 2.73 8.94 59.85 0.53 3.27 16 12 C -0.25 -6.30 9.45 -15.06 -0.14 -6.44 16 13 H 0.12 2.84 7.16 -52.49 -0.38 2.47 16 14 C 0.03 0.76 5.07 -17.43 -0.09 0.67 16 15 N -0.84 -20.59 10.67 55.49 0.59 -20.00 16 16 Si 0.93 18.71 29.58 -169.99 -5.03 13.68 16 17 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 18 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 19 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 20 C 0.00 0.09 9.17 -39.60 -0.36 -0.27 16 21 C -0.15 -2.60 5.89 -104.47 -0.62 -3.21 16 22 C -0.10 -1.43 9.79 36.01 0.35 -1.08 16 23 H 0.05 0.52 7.66 -51.93 -0.40 0.13 16 24 H 0.06 0.57 7.66 -51.93 -0.40 0.17 16 25 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.13 1.78 6.30 -52.48 -0.33 1.45 16 27 H 0.14 2.63 7.62 -52.48 -0.40 2.23 16 28 H 0.05 1.22 7.40 -51.93 -0.38 0.84 16 29 H 0.07 1.66 7.22 -51.93 -0.37 1.28 16 30 H 0.04 0.95 6.91 -51.93 -0.36 0.59 16 31 H 0.27 6.29 8.31 -40.82 -0.34 5.95 16 32 H 0.14 2.54 7.61 -52.48 -0.40 2.14 16 33 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.06 0.83 8.09 -51.93 -0.42 0.41 16 35 H 0.06 0.87 7.53 -51.93 -0.39 0.48 16 LS Contribution 307.04 15.07 4.63 4.63 Total: -1.00 -30.14 307.04 -7.42 -37.56 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -4.21 Total: 3.79 kcal Atomic # 6 Polarization: -22.40 SS G_CDS: -0.56 Total: -22.96 kcal Atomic # 7 Polarization: -40.28 SS G_CDS: 0.37 Total: -39.90 kcal Atomic # 8 Polarization: -54.70 SS G_CDS: -2.01 Total: -56.71 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -5.03 Total: 13.68 kcal Atomic # 16 Polarization: 60.53 SS G_CDS: -0.61 Total: 59.92 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -30.14 -7.42 -37.56 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057539708.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.846 kcal (2) G-P(sol) polarization free energy of solvation -30.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds