Wall clock time and date at job start Tue Mar 31 2020 06:56:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35895 * 117.00121 * 2 1 4 4 C 1.38745 * 120.05878 * 359.97438 * 3 2 1 5 5 C 1.38121 * 119.94710 * 180.27673 * 4 3 2 6 6 C 1.38290 * 120.05434 * 359.49153 * 5 4 3 7 7 S 1.76195 * 119.94674 * 180.25278 * 6 5 4 8 8 O 1.42094 * 106.40233 * 23.79818 * 7 6 5 9 9 O 1.42104 * 106.40341 * 156.71324 * 7 6 5 10 10 N 1.65600 * 107.22207 * 270.25629 * 7 6 5 11 11 C 1.46499 * 120.00060 * 270.00105 * 10 7 6 12 12 C 1.36935 * 120.00000 * 89.99556 * 10 7 6 13 13 H 1.08002 * 119.99731 * 20.62395 * 12 10 7 14 14 C 1.38809 * 120.00079 * 200.61723 * 12 10 7 15 15 N 1.31616 * 120.00193 * 14.76650 * 14 12 10 16 16 Si 1.86801 * 119.99979 * 194.76204 * 14 12 10 17 17 H 1.48503 * 109.46873 * 85.00770 * 16 14 12 18 18 H 1.48498 * 109.47423 * 205.00790 * 16 14 12 19 19 H 1.48499 * 109.47409 * 325.00969 * 16 14 12 20 20 C 1.38243 * 120.10969 * 0.51015 * 6 5 4 21 21 C 1.38169 * 120.05437 * 359.74655 * 20 6 5 22 22 C 1.50700 * 120.02599 * 179.97438 * 21 20 6 23 23 H 1.09003 * 109.46735 * 300.00595 * 1 2 3 24 24 H 1.08997 * 109.46640 * 59.99857 * 1 2 3 25 25 H 1.08995 * 109.47679 * 179.97438 * 1 2 3 26 26 H 1.08006 * 120.02988 * 0.02562 * 4 3 2 27 27 H 1.08004 * 119.97752 * 179.72811 * 5 4 3 28 28 H 1.08997 * 109.47243 * 94.99571 * 11 10 7 29 29 H 1.08992 * 109.47177 * 214.99859 * 11 10 7 30 30 H 1.08999 * 109.46832 * 334.99861 * 11 10 7 31 31 H 0.96994 * 120.00028 * 180.02562 * 15 14 12 32 32 H 1.08005 * 119.97752 * 179.76130 * 20 6 5 33 33 H 1.08999 * 109.47673 * 270.01904 * 22 21 20 34 34 H 1.08999 * 109.47264 * 30.01933 * 22 21 20 35 35 H 1.08999 * 109.47090 * 150.02128 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2916 2.3752 -0.0005 5 6 1.9211 3.6046 -0.0063 6 6 3.3021 3.6756 -0.0009 7 16 4.1021 5.2455 -0.0016 8 8 3.1709 6.1707 0.5424 9 8 5.3978 5.0359 0.5430 10 7 4.3248 5.6817 -1.5835 11 6 5.5537 5.2985 -2.2830 12 6 3.3602 6.4004 -2.2379 13 1 2.6308 6.9632 -1.6744 14 6 3.3201 6.4056 -3.6254 15 7 4.0037 5.5109 -4.3069 16 14 2.2956 7.6823 -4.5253 17 1 3.0871 8.9286 -4.6856 18 1 1.9178 7.1604 -5.8632 19 1 1.0676 7.9731 -3.7426 20 6 4.0561 2.5169 -0.0004 21 6 3.4312 1.2847 0.0000 22 6 4.2537 0.0220 0.0000 23 1 -0.3633 0.5140 0.8900 24 1 -0.3632 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 0.2129 2.3204 -0.0005 27 1 1.3343 4.5114 -0.0112 28 1 5.3850 4.3729 -2.8333 29 1 5.8371 6.0883 -2.9787 30 1 6.3533 5.1493 -1.5574 31 1 3.9759 5.5148 -5.2765 32 1 5.1346 2.5749 -0.0001 33 1 4.4521 -0.2826 -1.0276 34 1 5.1978 0.2033 0.5138 35 1 3.7063 -0.7682 0.5138 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057539708.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:09 Heat of formation + Delta-G solvation = -99.298893 kcal Electronic energy + Delta-G solvation = -20998.614481 eV Core-core repulsion = 17702.697889 eV Total energy + Delta-G solvation = -3295.916591 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.087 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.26187 -38.45551 -37.85928 -37.45912 -36.45557 -33.88508 -33.28738 -31.34656 -28.55118 -28.27506 -27.66683 -25.36678 -23.52782 -22.87901 -20.24223 -19.11530 -19.01564 -18.40880 -17.82033 -17.49976 -16.80421 -16.42275 -16.10431 -15.59656 -15.14498 -14.91950 -14.66083 -14.48985 -14.18140 -14.07454 -13.68277 -13.24378 -13.13277 -13.09346 -13.01333 -12.83652 -12.71799 -12.66077 -12.36649 -12.19819 -12.12350 -11.90812 -11.89292 -11.52894 -11.07882 -9.97150 -9.92223 -9.38573 -8.31538 -5.90896 -0.17286 0.08186 0.25805 1.50166 1.54047 1.62141 2.20844 2.25674 2.43848 2.74317 2.97296 3.24845 3.59564 3.72585 3.87307 4.20002 4.25483 4.34797 4.37689 4.52357 4.55695 4.59456 4.68969 4.79464 4.83454 5.02991 5.05286 5.19503 5.23415 5.27669 5.31355 5.42588 5.62982 5.68469 6.28241 6.44434 6.86263 7.29452 8.66924 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.017457 B = 0.006330 C = 0.005604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.581050 B = 4422.101762 C = 4995.279353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.318 6.318 3 C 0.159 3.841 4 C -0.226 4.226 5 C -0.007 4.007 6 C -0.711 4.711 7 S 2.585 3.415 8 O -1.009 7.009 9 O -1.015 7.015 10 N -0.829 5.829 11 C 0.130 3.870 12 C -0.291 4.291 13 H 0.106 0.894 14 C 0.000 4.000 15 N -0.869 5.869 16 Si 0.986 3.014 17 H -0.268 1.268 18 H -0.276 1.276 19 H -0.262 1.262 20 C -0.010 4.010 21 C -0.152 4.152 22 C -0.098 4.098 23 H 0.066 0.934 24 H 0.062 0.938 25 H 0.129 0.871 26 H 0.161 0.839 27 H 0.133 0.867 28 H 0.046 0.954 29 H 0.065 0.935 30 H 0.056 0.944 31 H 0.276 0.724 32 H 0.140 0.860 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.348 -10.020 2.627 11.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.231 6.231 3 C 0.112 3.888 4 C -0.245 4.245 5 C -0.027 4.027 6 C -0.794 4.794 7 S 2.685 3.315 8 O -0.999 6.999 9 O -1.005 7.005 10 N -0.656 5.656 11 C -0.016 4.016 12 C -0.434 4.434 13 H 0.124 0.876 14 C -0.209 4.209 15 N -0.509 5.509 16 Si 0.809 3.191 17 H -0.193 1.193 18 H -0.201 1.201 19 H -0.186 1.186 20 C -0.029 4.029 21 C -0.154 4.154 22 C -0.155 4.155 23 H 0.085 0.915 24 H 0.080 0.920 25 H 0.147 0.853 26 H 0.178 0.822 27 H 0.151 0.849 28 H 0.065 0.935 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.086 0.914 32 H 0.158 0.842 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.922 -9.942 3.379 11.597 hybrid contribution -0.957 0.139 -0.779 1.242 sum -5.879 -9.803 2.600 11.723 Atomic orbital electron populations 1.23454 0.76151 1.06082 1.02406 1.86045 1.23693 1.25670 1.87722 1.19065 0.92005 0.84793 0.92928 1.21565 1.01486 0.91594 1.09895 1.20784 0.92661 0.98597 0.90637 1.31737 1.05816 1.23932 1.17950 1.08134 0.72491 0.74475 0.76449 1.93321 1.64572 1.62561 1.79456 1.93324 1.40304 1.87170 1.79677 1.53747 1.22542 1.57255 1.32012 1.21220 0.83708 1.01161 0.95546 1.19963 1.12513 1.20130 0.90816 0.87648 1.26336 0.98181 0.98968 0.97380 1.70182 1.39742 1.32484 1.08447 0.85047 0.78714 0.78000 0.77389 1.19347 1.20091 1.18644 1.20745 0.99923 0.90364 0.91884 1.19700 0.91613 0.96848 1.07201 1.20633 0.98912 0.92818 1.03095 0.91496 0.91954 0.85285 0.82161 0.84934 0.93543 0.91620 0.92543 0.91364 0.84189 0.90648 0.90408 0.90301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.22 9.81 113.37 1.11 1.33 16 2 O -0.32 -8.27 9.54 -92.37 -0.88 -9.15 16 3 C 0.16 5.09 6.66 22.50 0.15 5.24 16 4 C -0.23 -7.40 9.04 22.36 0.20 -7.20 16 5 C -0.01 -0.30 9.52 22.25 0.21 -0.08 16 6 C -0.71 -30.78 5.97 22.28 0.13 -30.65 16 7 S 2.58 124.96 5.65 -56.49 -0.32 124.65 16 8 O -1.01 -52.83 16.07 -128.00 -2.06 -54.89 16 9 O -1.01 -50.68 15.83 -128.00 -2.03 -52.71 16 10 N -0.83 -41.42 3.31 -364.92 -1.21 -42.63 16 11 C 0.13 6.02 8.94 127.77 1.14 7.17 16 12 C -0.29 -14.96 9.45 84.03 0.79 -14.17 16 13 H 0.11 5.44 7.16 -2.91 -0.02 5.42 16 14 C 0.00 -0.01 5.07 84.86 0.43 0.42 16 15 N -0.87 -43.31 10.67 21.65 0.23 -43.08 16 16 Si 0.99 38.58 29.58 68.60 2.03 40.61 16 17 H -0.27 -10.26 7.11 99.48 0.71 -9.55 16 18 H -0.28 -10.43 7.11 99.48 0.71 -9.72 16 19 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 20 C -0.01 -0.39 9.17 22.25 0.20 -0.18 16 21 C -0.15 -5.15 5.89 -19.77 -0.12 -5.27 16 22 C -0.10 -2.53 9.79 71.24 0.70 -1.84 16 23 H 0.07 0.99 7.66 -2.39 -0.02 0.98 16 24 H 0.06 1.01 7.66 -2.39 -0.02 0.99 16 25 H 0.13 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.16 4.00 6.30 -2.91 -0.02 3.98 16 27 H 0.13 5.21 7.62 -2.91 -0.02 5.19 16 28 H 0.05 2.18 7.40 -2.39 -0.02 2.16 16 29 H 0.07 3.08 7.22 -2.39 -0.02 3.07 16 30 H 0.06 2.42 6.91 -2.39 -0.02 2.40 16 31 H 0.28 12.86 8.31 -92.71 -0.77 12.09 16 32 H 0.14 5.20 7.61 -2.91 -0.02 5.17 16 33 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.08 1.80 8.09 -2.39 -0.02 1.78 16 35 H 0.08 1.83 7.53 -2.39 -0.02 1.81 16 Total: -1.00 -64.70 307.04 1.83 -62.87 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: 1.10 Total: 19.57 kcal Atomic # 6 Polarization: -50.20 SS G_CDS: 4.96 Total: -45.24 kcal Atomic # 7 Polarization: -84.73 SS G_CDS: -0.98 Total: -85.70 kcal Atomic # 8 Polarization: -111.79 SS G_CDS: -4.96 Total: -116.75 kcal Atomic # 14 Polarization: 38.58 SS G_CDS: 2.03 Total: 40.61 kcal Atomic # 16 Polarization: 124.96 SS G_CDS: -0.32 Total: 124.65 kcal Total: -64.70 1.83 -62.87 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057539708.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.431 kcal (2) G-P(sol) polarization free energy of solvation -64.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds