Wall clock time and date at job start Tue Mar 31 2020 05:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.47124 * 2 1 4 4 C 1.50696 * 109.47133 * 120.00444 * 2 1 3 5 5 H 1.07997 * 119.99898 * 120.00446 * 4 2 1 6 6 C 1.37876 * 119.99887 * 299.99504 * 4 2 1 7 7 N 1.31516 * 119.99935 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00172 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.46679 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.47040 * 120.00026 * 8 6 4 11 11 H 1.48498 * 109.47209 * 240.00457 * 8 6 4 12 12 N 1.46906 * 109.46733 * 240.00049 * 2 1 3 13 13 C 1.46900 * 110.99825 * 179.46604 * 12 2 1 14 14 C 1.39076 * 110.99879 * 55.51736 * 12 2 1 15 15 N 1.32399 * 119.71243 * 58.82322 * 14 12 2 16 16 C 1.31957 * 121.63377 * 180.02562 * 15 14 12 17 17 C 1.38047 * 120.88112 * 0.02562 * 16 15 14 18 18 N 1.48000 * 120.33379 * 179.97438 * 17 16 15 19 19 O 1.21803 * 120.00040 * 359.97438 * 18 17 16 20 20 O 1.21799 * 120.00116 * 179.97438 * 18 17 16 21 21 C 1.38847 * 119.33518 * 359.97438 * 17 16 15 22 22 C 1.38426 * 118.49465 * 0.02562 * 21 17 16 23 23 Cl 1.73595 * 120.45937 * 180.02562 * 22 21 17 24 24 H 1.09004 * 109.46960 * 295.74266 * 1 2 3 25 25 H 1.09001 * 109.47547 * 55.74238 * 1 2 3 26 26 H 1.09001 * 109.47286 * 175.74806 * 1 2 3 27 27 H 0.96998 * 119.99916 * 179.97438 * 7 6 4 28 28 H 1.09004 * 109.47399 * 301.67932 * 13 12 2 29 29 H 1.08999 * 109.46835 * 61.67312 * 13 12 2 30 30 H 1.08997 * 109.47435 * 181.67494 * 13 12 2 31 31 H 1.08003 * 119.55891 * 179.72842 * 16 15 14 32 32 H 1.08001 * 120.75305 * 179.97438 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1312 6 6 1.6993 -0.2394 2.4827 7 7 0.9429 0.8296 2.6034 8 14 2.3225 -1.1197 4.0079 9 1 3.1484 -2.2858 3.6036 10 1 3.1473 -0.1859 4.8160 11 1 1.1679 -1.5868 4.8164 12 7 2.0196 -0.6925 -1.1995 13 6 3.4880 -0.7011 -1.2399 14 6 1.4926 -0.1231 -2.3537 15 7 1.7095 1.1573 -2.6118 16 6 1.2273 1.7363 -3.6950 17 6 0.4732 1.0220 -4.6043 18 7 -0.0622 1.6837 -5.8150 19 8 0.1614 2.8646 -6.0129 20 8 -0.7263 1.0476 -6.6136 21 6 0.2222 -0.3237 -4.3717 22 6 0.7409 -0.9040 -3.2270 23 17 0.4589 -2.5826 -2.8861 24 1 -0.3633 0.4464 0.9257 25 1 -0.3634 0.5785 -0.8494 26 1 -0.3634 -1.0248 -0.0762 27 1 0.7083 1.1608 3.4844 28 1 3.8580 0.3241 -1.2232 29 1 3.8721 -1.2401 -0.3739 30 1 3.8236 -1.1936 -2.1525 31 1 1.4211 2.7843 -3.8702 32 1 -0.3653 -0.9042 -5.0676 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226805355.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:38 Heat of formation + Delta-G solvation = 31.054053 kcal Electronic energy + Delta-G solvation = -20348.523864 eV Core-core repulsion = 16952.675751 eV Total energy + Delta-G solvation = -3395.848113 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 285.067 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.46172 -41.99259 -38.61090 -37.86918 -37.72871 -35.10132 -34.01901 -32.42901 -31.24329 -28.45765 -27.04344 -26.06007 -25.27654 -23.92948 -22.01659 -20.69916 -20.04952 -18.78740 -18.69340 -17.97662 -17.93886 -17.13038 -16.56652 -16.10687 -15.45189 -15.12798 -14.96562 -14.66467 -14.11553 -13.67527 -13.28961 -13.07811 -12.83515 -12.82373 -12.69668 -12.64045 -12.36851 -12.34467 -12.24329 -12.18737 -12.10890 -11.52924 -11.35609 -11.03362 -10.58716 -10.33841 -9.59766 -8.15779 -6.28110 -1.53315 -0.55507 -0.00679 0.01956 0.82686 1.43234 1.46285 1.56853 1.92283 2.32775 2.51408 2.93793 2.99611 3.15370 3.29681 3.48357 3.78959 4.22236 4.33028 4.52885 4.58510 4.65809 4.85002 4.89600 5.06605 5.07291 5.30804 5.59772 5.65057 5.95519 6.10374 6.20058 6.39326 6.43219 6.82425 7.41062 8.90860 Molecular weight = 285.07amu Principal moments of inertia in cm(-1) A = 0.025673 B = 0.004926 C = 0.004534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.380856 B = 5682.334894 C = 6174.253922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.230 3.770 3 H -0.013 1.013 4 C -0.516 4.516 5 H 0.069 0.931 6 C 0.015 3.985 7 N -0.920 5.920 8 Si 0.962 3.038 9 H -0.263 1.263 10 H -0.284 1.284 11 H -0.283 1.283 12 N -0.492 5.492 13 C 0.045 3.955 14 C 0.369 3.631 15 N -0.506 5.506 16 C 0.194 3.806 17 C -0.109 4.109 18 N 0.042 4.958 19 O -0.161 6.161 20 O -0.158 6.158 21 C 0.011 3.989 22 C -0.077 4.077 23 Cl -0.002 7.002 24 H 0.069 0.931 25 H 0.005 0.995 26 H 0.041 0.959 27 H 0.263 0.737 28 H 0.027 0.973 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.206 0.794 32 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.306 -3.174 -12.992 13.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.125 3.875 3 H 0.005 0.995 4 C -0.554 4.554 5 H 0.087 0.913 6 C -0.184 4.184 7 N -0.560 5.560 8 Si 0.788 3.212 9 H -0.186 1.186 10 H -0.210 1.210 11 H -0.209 1.209 12 N -0.217 5.217 13 C -0.101 4.101 14 C 0.141 3.859 15 N -0.219 5.219 16 C 0.033 3.967 17 C -0.195 4.195 18 N 0.561 4.439 19 O -0.376 6.376 20 O -0.375 6.375 21 C -0.016 4.016 22 C -0.109 4.109 23 Cl 0.027 6.973 24 H 0.087 0.913 25 H 0.024 0.976 26 H 0.060 0.940 27 H 0.072 0.928 28 H 0.045 0.955 29 H 0.103 0.897 30 H 0.094 0.906 31 H 0.223 0.777 32 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 0.827 -3.563 -11.582 12.146 hybrid contribution -0.282 0.281 0.199 0.445 sum 0.545 -3.283 -11.383 11.860 Atomic orbital electron populations 1.21680 0.97560 0.99053 0.99780 1.19138 0.92157 0.91191 0.85009 0.99544 1.21323 1.31488 1.12606 0.89998 0.91258 1.25671 0.95203 0.95605 1.01897 1.70012 1.37557 1.24153 1.24237 0.85437 0.78052 0.78665 0.79075 1.18649 1.20960 1.20926 1.60689 1.10328 1.51230 0.99420 1.22251 0.83976 1.00612 1.03216 1.20741 0.87869 0.86462 0.90846 1.68625 1.22801 1.11951 1.18541 1.23129 0.86488 1.01974 0.85139 1.22106 1.10431 0.95169 0.91834 1.43304 0.98575 1.00808 1.01254 1.94560 1.62999 0.98864 1.81204 1.94540 1.36482 1.65446 1.40995 1.21501 0.93354 0.91831 0.94892 1.21557 1.02712 0.90518 0.96071 1.98409 1.94432 1.09631 1.94807 0.91258 0.97606 0.94026 0.92815 0.95450 0.89687 0.90609 0.77727 0.78367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.76 8.72 71.98 0.63 -5.13 16 2 C 0.23 10.90 1.87 44.17 0.08 10.98 16 3 H -0.01 -0.71 7.94 -2.39 -0.02 -0.73 16 4 C -0.52 -26.20 7.96 25.60 0.20 -26.00 16 5 H 0.07 3.43 6.71 -2.91 -0.02 3.41 16 6 C 0.02 0.80 5.29 84.65 0.45 1.25 16 7 N -0.92 -50.73 11.29 21.45 0.24 -50.49 16 8 Si 0.96 41.35 29.54 68.60 2.03 43.37 16 9 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 10 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 11 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 12 N -0.49 -19.12 4.02 -706.69 -2.84 -21.96 16 13 C 0.05 1.58 9.11 127.69 1.16 2.74 16 14 C 0.37 12.57 3.78 133.05 0.50 13.08 16 15 N -0.51 -16.88 9.71 -193.15 -1.87 -18.75 16 16 C 0.19 5.16 10.71 84.63 0.91 6.07 16 17 C -0.11 -2.71 6.87 36.48 0.25 -2.46 16 18 N 0.04 1.07 4.45 -46.24 -0.21 0.87 16 19 O -0.16 -4.28 18.46 18.88 0.35 -3.93 16 20 O -0.16 -4.10 18.52 18.89 0.35 -3.75 16 21 C 0.01 0.25 9.47 22.46 0.21 0.47 16 22 C -0.08 -2.18 6.36 22.54 0.14 -2.03 16 23 Cl 0.00 -0.05 28.47 -2.72 -0.08 -0.13 16 24 H 0.07 3.65 5.97 -2.38 -0.01 3.64 16 25 H 0.00 0.22 7.28 -2.39 -0.02 0.20 16 26 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 27 H 0.26 13.82 8.31 -92.71 -0.77 13.05 16 28 H 0.03 0.98 8.07 -2.39 -0.02 0.96 16 29 H 0.08 3.05 6.55 -2.39 -0.02 3.03 16 30 H 0.08 2.17 8.11 -2.39 -0.02 2.15 16 31 H 0.21 4.38 7.61 -2.91 -0.02 4.36 16 32 H 0.20 3.48 7.69 -2.91 -0.02 3.46 16 Total: -1.00 -56.98 298.30 3.67 -53.30 By element: Atomic # 1 Polarization: 1.35 SS G_CDS: 1.16 Total: 2.51 kcal Atomic # 6 Polarization: -5.59 SS G_CDS: 4.54 Total: -1.05 kcal Atomic # 7 Polarization: -85.65 SS G_CDS: -4.68 Total: -90.33 kcal Atomic # 8 Polarization: -8.37 SS G_CDS: 0.70 Total: -7.68 kcal Atomic # 14 Polarization: 41.35 SS G_CDS: 2.03 Total: 43.37 kcal Atomic # 17 Polarization: -0.05 SS G_CDS: -0.08 Total: -0.13 kcal Total: -56.98 3.67 -53.30 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226805355.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.355 kcal (2) G-P(sol) polarization free energy of solvation -56.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.301 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds