Wall clock time and date at job start Tue Mar 31 2020 05:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.46728 * 2 1 4 4 C 1.35896 * 117.00039 * 179.97438 * 3 2 1 5 5 C 1.38738 * 120.05353 * 359.72616 * 4 3 2 6 6 C 1.38149 * 119.94056 * 179.70430 * 5 4 3 7 7 C 1.38261 * 120.05702 * 0.59118 * 6 5 4 8 8 S 1.76200 * 119.94412 * 179.70694 * 7 6 5 9 9 O 1.42092 * 106.40256 * 23.51551 * 8 7 6 10 10 O 1.42109 * 106.40314 * 156.43690 * 8 7 6 11 11 N 1.65603 * 107.21457 * 269.97372 * 8 7 6 12 12 C 1.46503 * 119.99830 * 65.00294 * 11 8 7 13 13 C 1.50700 * 109.46882 * 164.99604 * 12 11 8 14 14 H 1.08004 * 120.00316 * 0.02562 * 13 12 11 15 15 C 1.37879 * 119.99776 * 179.97438 * 13 12 11 16 16 N 1.31517 * 119.99916 * 180.02562 * 15 13 12 17 17 Si 1.86803 * 120.00008 * 0.02562 * 15 13 12 18 18 H 1.48499 * 109.46654 * 90.00034 * 17 15 13 19 19 H 1.48496 * 109.47057 * 209.99667 * 17 15 13 20 20 H 1.48494 * 109.47162 * 330.00068 * 17 15 13 21 21 C 1.38262 * 120.11084 * 359.67801 * 7 6 5 22 22 C 1.38145 * 120.05942 * 0.02720 * 21 7 6 23 23 H 1.09001 * 109.47362 * 60.00784 * 1 2 3 24 24 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47486 * 300.00062 * 1 2 3 26 26 H 1.09000 * 109.47486 * 239.99938 * 2 1 3 27 27 H 1.09001 * 109.47362 * 119.99215 * 2 1 3 28 28 H 1.07995 * 120.02746 * 359.97438 * 5 4 3 29 29 H 1.07996 * 119.96832 * 180.27565 * 6 5 4 30 30 H 0.96999 * 120.00241 * 244.99873 * 11 8 7 31 31 H 1.09001 * 109.46946 * 284.99773 * 12 11 8 32 32 H 1.08995 * 109.46999 * 45.00027 * 12 11 8 33 33 H 0.96995 * 119.99847 * 179.97438 * 16 15 13 34 34 H 1.08008 * 119.97547 * 180.02562 * 21 7 6 35 35 H 1.08000 * 120.03441 * 179.97438 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.3535 1.5255 0.0005 5 6 4.1997 0.4261 0.0068 6 6 5.5689 0.6099 0.0012 7 6 6.0961 1.8881 0.0016 8 16 7.8429 2.1190 0.0022 9 8 8.4047 0.9326 -0.5417 10 8 8.0771 3.4105 -0.5423 11 7 8.3282 2.1836 1.5843 12 6 8.1858 1.0050 2.4428 13 6 9.0144 1.1878 3.6882 14 1 9.5893 2.0916 3.8265 15 6 9.0378 0.2016 4.6514 16 7 9.7606 0.3612 5.7385 17 14 8.0430 -1.3613 4.4124 18 1 8.8723 -2.3734 3.7103 19 1 7.6296 -1.8922 5.7362 20 1 6.8363 -1.0607 3.6008 21 6 5.2549 2.9853 0.0010 22 6 3.8850 2.8070 0.0005 23 1 -0.3634 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5137 0.8900 28 1 3.7884 -0.5724 0.0117 29 1 6.2281 -0.2456 0.0015 30 1 8.7068 3.0017 1.9425 31 1 7.1385 0.8806 2.7182 32 1 8.5278 0.1206 1.9054 33 1 9.7768 -0.3324 6.4163 34 1 5.6690 3.9828 0.0010 35 1 3.2282 3.6644 0.0005 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000007306684.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:22 Heat of formation + Delta-G solvation = -91.481862 kcal Electronic energy + Delta-G solvation = -20197.977223 eV Core-core repulsion = 16902.399604 eV Total energy + Delta-G solvation = -3295.577620 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.087 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.36044 -37.72284 -36.80751 -35.41935 -34.76401 -32.37451 -32.21864 -31.12811 -29.86063 -27.39406 -24.45556 -23.01893 -22.13542 -21.89778 -19.20292 -18.61709 -17.76466 -17.13854 -16.45450 -16.29417 -16.08761 -15.47840 -14.83939 -14.44862 -14.02412 -13.72750 -13.68261 -13.56595 -13.24300 -13.00134 -12.77802 -12.49490 -12.36343 -12.07457 -12.00827 -11.68958 -11.59092 -11.15109 -11.05236 -10.94112 -10.74358 -10.56695 -10.00939 -9.55062 -9.18998 -8.92607 -8.68356 -8.52177 -6.21375 -4.22596 0.75443 1.01208 1.20785 2.82649 3.20862 3.26974 3.27839 3.32947 3.69982 4.18809 4.28901 4.46056 4.55304 4.61960 4.66688 4.87525 4.89268 5.10025 5.12375 5.17655 5.37047 5.40680 5.49598 5.65027 5.80544 5.86702 6.08244 6.10757 6.16811 6.52631 6.82437 6.89853 7.09717 7.37319 7.82010 8.34926 8.80660 9.36589 10.91125 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.014371 B = 0.005683 C = 0.004440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.936127 B = 4925.695942 C = 6305.311430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.049 3.951 3 O -0.313 6.313 4 C 0.177 3.823 5 C -0.231 4.231 6 C 0.023 3.977 7 C -0.708 4.708 8 S 2.694 3.306 9 O -0.965 6.965 10 O -0.975 6.975 11 N -1.096 6.096 12 C 0.217 3.783 13 C -0.531 4.531 14 H 0.083 0.917 15 C 0.075 3.925 16 N -0.892 5.892 17 Si 0.871 3.129 18 H -0.270 1.270 19 H -0.283 1.283 20 H -0.263 1.263 21 C 0.020 3.980 22 C -0.175 4.175 23 H 0.066 0.934 24 H 0.079 0.921 25 H 0.067 0.933 26 H 0.065 0.935 27 H 0.067 0.933 28 H 0.135 0.865 29 H 0.144 0.856 30 H 0.416 0.584 31 H 0.019 0.981 32 H 0.031 0.969 33 H 0.267 0.733 34 H 0.147 0.853 35 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.717 -0.031 -11.302 20.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.026 4.026 3 O -0.226 6.226 4 C 0.131 3.869 5 C -0.251 4.251 6 C 0.004 3.996 7 C -0.794 4.794 8 S 2.782 3.218 9 O -0.955 6.955 10 O -0.965 6.965 11 N -0.858 5.858 12 C 0.092 3.908 13 C -0.570 4.570 14 H 0.101 0.899 15 C -0.129 4.129 16 N -0.529 5.529 17 Si 0.697 3.303 18 H -0.195 1.195 19 H -0.208 1.208 20 H -0.188 1.188 21 C 0.001 3.999 22 C -0.195 4.195 23 H 0.085 0.915 24 H 0.098 0.902 25 H 0.086 0.914 26 H 0.084 0.916 27 H 0.085 0.915 28 H 0.153 0.847 29 H 0.161 0.839 30 H 0.251 0.749 31 H 0.037 0.963 32 H 0.049 0.951 33 H 0.077 0.923 34 H 0.165 0.835 35 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -16.403 -0.104 -11.927 20.281 hybrid contribution -1.009 -0.936 0.608 1.505 sum -17.412 -1.040 -11.319 20.793 Atomic orbital electron populations 1.21780 0.92477 1.03016 1.03594 1.22895 0.96081 0.81642 1.01947 1.86086 1.18995 1.29895 1.87629 1.19244 0.82144 0.94429 0.91091 1.21334 0.94346 0.98361 1.11047 1.20784 0.95007 0.95847 0.87969 1.31061 1.27740 0.99595 1.20966 1.01726 0.73568 0.73325 0.73176 1.93554 1.75478 1.49139 1.77281 1.93536 1.85024 1.40488 1.77493 1.55234 1.77275 1.23258 1.30019 1.19455 0.97061 0.83004 0.91255 1.21052 1.28743 1.06205 1.00977 0.89879 1.24852 0.95019 0.98193 0.94791 1.69874 1.39727 1.34560 1.08764 0.86918 0.81266 0.83995 0.78086 1.19545 1.20814 1.18776 1.20737 0.92125 0.98145 0.88894 1.20510 0.95284 0.94935 1.08730 0.91482 0.90202 0.91386 0.91647 0.91505 0.84713 0.83874 0.74871 0.96319 0.95091 0.92274 0.83504 0.84384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 10.28 37.16 0.38 -0.57 16 2 C 0.05 0.41 5.46 37.16 0.20 0.62 16 3 O -0.31 -3.63 10.14 -19.41 -0.20 -3.83 16 4 C 0.18 2.32 6.69 -39.21 -0.26 2.06 16 5 C -0.23 -3.04 9.04 -39.43 -0.36 -3.40 16 6 C 0.02 0.35 9.51 -39.61 -0.38 -0.03 16 7 C -0.71 -11.23 5.95 -39.56 -0.24 -11.46 16 8 S 2.69 48.20 5.74 -107.50 -0.62 47.58 16 9 O -0.96 -19.64 16.75 -57.17 -0.96 -20.60 16 10 O -0.98 -18.25 17.28 -57.17 -0.99 -19.24 16 11 N -1.10 -21.34 5.99 -11.66 -0.07 -21.41 16 12 C 0.22 4.96 5.04 -5.19 -0.03 4.94 16 13 C -0.53 -14.34 9.83 -34.44 -0.34 -14.68 16 14 H 0.08 2.38 7.90 -52.48 -0.41 1.96 16 15 C 0.08 2.09 5.47 -17.82 -0.10 1.99 16 16 N -0.89 -26.23 13.96 55.43 0.77 -25.46 16 17 Si 0.87 20.37 27.47 -169.99 -4.67 15.70 16 18 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.26 -5.76 6.54 56.52 0.37 -5.39 16 21 C 0.02 0.28 9.51 -39.61 -0.38 -0.09 16 22 C -0.18 -2.26 9.99 -39.43 -0.39 -2.66 16 23 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 24 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 25 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.07 0.48 7.68 -51.93 -0.40 0.08 16 27 H 0.07 0.53 7.65 -51.93 -0.40 0.14 16 28 H 0.14 1.40 6.30 -52.49 -0.33 1.07 16 29 H 0.14 2.07 7.61 -52.49 -0.40 1.67 16 30 H 0.42 7.55 8.54 -34.48 -0.29 7.26 16 31 H 0.02 0.42 7.20 -51.93 -0.37 0.04 16 32 H 0.03 0.72 7.18 -51.93 -0.37 0.34 16 33 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 34 H 0.15 1.79 7.61 -52.48 -0.40 1.39 16 35 H 0.14 1.45 8.06 -52.49 -0.42 1.03 16 LS Contribution 313.29 15.07 4.72 4.72 Total: -1.00 -33.14 313.29 -8.12 -41.26 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -4.24 Total: 4.57 kcal Atomic # 6 Polarization: -21.41 SS G_CDS: -1.88 Total: -23.29 kcal Atomic # 7 Polarization: -47.58 SS G_CDS: 0.70 Total: -46.87 kcal Atomic # 8 Polarization: -41.52 SS G_CDS: -2.14 Total: -43.67 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -4.67 Total: 15.70 kcal Atomic # 16 Polarization: 48.20 SS G_CDS: -0.62 Total: 47.58 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -33.14 -8.12 -41.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007306684.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.223 kcal (2) G-P(sol) polarization free energy of solvation -33.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds