Wall clock time and date at job start Tue Mar 31 2020 05:35:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.46728 * 2 1 4 4 C 1.35896 * 117.00039 * 179.97438 * 3 2 1 5 5 C 1.38738 * 120.05353 * 359.72616 * 4 3 2 6 6 C 1.38149 * 119.94056 * 179.70430 * 5 4 3 7 7 C 1.38261 * 120.05702 * 0.59118 * 6 5 4 8 8 S 1.76200 * 119.94412 * 179.70694 * 7 6 5 9 9 O 1.42092 * 106.40256 * 23.51551 * 8 7 6 10 10 O 1.42109 * 106.40314 * 156.43690 * 8 7 6 11 11 N 1.65603 * 107.21457 * 269.97372 * 8 7 6 12 12 C 1.46503 * 119.99830 * 65.00294 * 11 8 7 13 13 C 1.50700 * 109.46882 * 164.99604 * 12 11 8 14 14 H 1.08004 * 120.00316 * 0.02562 * 13 12 11 15 15 C 1.37879 * 119.99776 * 179.97438 * 13 12 11 16 16 N 1.31517 * 119.99916 * 180.02562 * 15 13 12 17 17 Si 1.86803 * 120.00008 * 0.02562 * 15 13 12 18 18 H 1.48499 * 109.46654 * 90.00034 * 17 15 13 19 19 H 1.48496 * 109.47057 * 209.99667 * 17 15 13 20 20 H 1.48494 * 109.47162 * 330.00068 * 17 15 13 21 21 C 1.38262 * 120.11084 * 359.67801 * 7 6 5 22 22 C 1.38145 * 120.05942 * 0.02720 * 21 7 6 23 23 H 1.09001 * 109.47362 * 60.00784 * 1 2 3 24 24 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47486 * 300.00062 * 1 2 3 26 26 H 1.09000 * 109.47486 * 239.99938 * 2 1 3 27 27 H 1.09001 * 109.47362 * 119.99215 * 2 1 3 28 28 H 1.07995 * 120.02746 * 359.97438 * 5 4 3 29 29 H 1.07996 * 119.96832 * 180.27565 * 6 5 4 30 30 H 0.96999 * 120.00241 * 244.99873 * 11 8 7 31 31 H 1.09001 * 109.46946 * 284.99773 * 12 11 8 32 32 H 1.08995 * 109.46999 * 45.00027 * 12 11 8 33 33 H 0.96995 * 119.99847 * 179.97438 * 16 15 13 34 34 H 1.08008 * 119.97547 * 180.02562 * 21 7 6 35 35 H 1.08000 * 120.03441 * 179.97438 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.3535 1.5255 0.0005 5 6 4.1997 0.4261 0.0068 6 6 5.5689 0.6099 0.0012 7 6 6.0961 1.8881 0.0016 8 16 7.8429 2.1190 0.0022 9 8 8.4047 0.9326 -0.5417 10 8 8.0771 3.4105 -0.5423 11 7 8.3282 2.1836 1.5843 12 6 8.1858 1.0050 2.4428 13 6 9.0144 1.1878 3.6882 14 1 9.5893 2.0916 3.8265 15 6 9.0378 0.2016 4.6514 16 7 9.7606 0.3612 5.7385 17 14 8.0430 -1.3613 4.4124 18 1 8.8723 -2.3734 3.7103 19 1 7.6296 -1.8922 5.7362 20 1 6.8363 -1.0607 3.6008 21 6 5.2549 2.9853 0.0010 22 6 3.8850 2.8070 0.0005 23 1 -0.3634 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5137 0.8900 28 1 3.7884 -0.5724 0.0117 29 1 6.2281 -0.2456 0.0015 30 1 8.7068 3.0017 1.9425 31 1 7.1385 0.8806 2.7182 32 1 8.5278 0.1206 1.9054 33 1 9.7768 -0.3324 6.4163 34 1 5.6690 3.9828 0.0010 35 1 3.2282 3.6644 0.0005 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000007306684.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:21 Heat of formation + Delta-G solvation = -116.321217 kcal Electronic energy + Delta-G solvation = -20199.054338 eV Core-core repulsion = 16902.399604 eV Total energy + Delta-G solvation = -3296.654735 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.087 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.28650 -38.67298 -38.30615 -36.92492 -36.52289 -34.23487 -33.07359 -32.12052 -30.81395 -29.32940 -25.23320 -24.09824 -23.98158 -22.81371 -20.64315 -19.61095 -19.36339 -18.50431 -17.87401 -17.44358 -17.17310 -16.95953 -16.18115 -15.78580 -15.26673 -15.06345 -14.75539 -14.63642 -14.51726 -14.45282 -14.19246 -13.73309 -13.35624 -13.24872 -13.21492 -13.13264 -12.75792 -12.74460 -12.43939 -11.97661 -11.91334 -11.85680 -11.80833 -11.62353 -10.88787 -10.29502 -10.20575 -9.68961 -8.32655 -6.39686 -0.56607 -0.17892 0.18122 1.37818 1.40104 1.48987 2.01780 2.08400 2.33595 2.43674 2.80783 3.02276 3.33380 3.62349 3.75249 4.01369 4.06449 4.14649 4.27603 4.33142 4.42135 4.43507 4.71545 4.82400 4.91363 4.92062 5.00303 5.02907 5.06196 5.08436 5.22914 5.41383 5.53086 6.19783 6.21154 6.25237 6.66733 7.23839 8.83061 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.014371 B = 0.005683 C = 0.004440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.936127 B = 4925.695942 C = 6305.311430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.037 3.963 3 O -0.319 6.319 4 C 0.179 3.821 5 C -0.230 4.230 6 C 0.005 3.995 7 C -0.719 4.719 8 S 2.710 3.290 9 O -0.992 6.992 10 O -0.986 6.986 11 N -1.102 6.102 12 C 0.224 3.776 13 C -0.542 4.542 14 H 0.049 0.951 15 C 0.016 3.984 16 N -0.940 5.940 17 Si 0.932 3.068 18 H -0.264 1.264 19 H -0.278 1.278 20 H -0.235 1.235 21 C 0.013 3.987 22 C -0.178 4.178 23 H 0.066 0.934 24 H 0.101 0.899 25 H 0.063 0.937 26 H 0.078 0.922 27 H 0.073 0.927 28 H 0.163 0.837 29 H 0.146 0.854 30 H 0.419 0.581 31 H 0.035 0.965 32 H 0.033 0.967 33 H 0.270 0.730 34 H 0.160 0.840 35 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.621 -1.197 -12.319 23.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.038 4.038 3 O -0.232 6.232 4 C 0.132 3.868 5 C -0.250 4.250 6 C -0.014 4.014 7 C -0.809 4.809 8 S 2.803 3.197 9 O -0.982 6.982 10 O -0.977 6.977 11 N -0.862 5.862 12 C 0.098 3.902 13 C -0.581 4.581 14 H 0.068 0.932 15 C -0.183 4.183 16 N -0.579 5.579 17 Si 0.754 3.246 18 H -0.189 1.189 19 H -0.203 1.203 20 H -0.158 1.158 21 C -0.007 4.007 22 C -0.197 4.197 23 H 0.085 0.915 24 H 0.119 0.881 25 H 0.082 0.918 26 H 0.096 0.904 27 H 0.091 0.909 28 H 0.180 0.820 29 H 0.163 0.837 30 H 0.254 0.746 31 H 0.052 0.948 32 H 0.051 0.949 33 H 0.079 0.921 34 H 0.177 0.823 35 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -19.274 -1.248 -12.959 23.259 hybrid contribution -0.202 -0.503 0.887 1.039 sum -19.477 -1.751 -12.072 22.981 Atomic orbital electron populations 1.21813 0.90985 1.04364 1.03404 1.23250 0.97333 0.80282 1.02890 1.86105 1.17971 1.32043 1.87047 1.19421 0.82956 0.94495 0.89949 1.21603 0.93464 0.99887 1.10017 1.20962 0.96164 0.95536 0.88740 1.30586 1.25627 1.00893 1.23825 1.00959 0.74258 0.72431 0.72063 1.93510 1.77078 1.50084 1.77565 1.93514 1.85878 1.40951 1.77318 1.55171 1.78287 1.22544 1.30206 1.19239 0.96906 0.84181 0.89867 1.21352 1.28788 1.05113 1.02843 0.93230 1.25796 0.96212 1.02007 0.94306 1.70021 1.41782 1.36094 1.10015 0.85932 0.80681 0.79269 0.78682 1.18896 1.20318 1.15787 1.20963 0.92685 0.98266 0.88745 1.20800 0.95056 0.96021 1.07814 0.91471 0.88091 0.91791 0.90351 0.90864 0.81986 0.83676 0.74570 0.94751 0.94944 0.92077 0.82253 0.82079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 10.28 71.98 0.74 -0.66 16 2 C 0.04 0.49 5.46 71.98 0.39 0.88 16 3 O -0.32 -6.39 10.14 -92.39 -0.94 -7.33 16 4 C 0.18 4.14 6.69 22.51 0.15 4.29 16 5 C -0.23 -5.35 9.04 22.37 0.20 -5.15 16 6 C 0.01 0.15 9.51 22.25 0.21 0.36 16 7 C -0.72 -21.77 5.95 22.28 0.13 -21.64 16 8 S 2.71 95.78 5.74 -56.49 -0.32 95.45 16 9 O -0.99 -40.11 16.75 -128.00 -2.14 -42.26 16 10 O -0.99 -36.55 17.28 -128.00 -2.21 -38.76 16 11 N -1.10 -42.90 5.99 -190.79 -1.14 -44.05 16 12 C 0.22 10.09 5.04 85.63 0.43 10.52 16 13 C -0.54 -29.77 9.83 25.60 0.25 -29.52 16 14 H 0.05 2.96 7.90 -2.91 -0.02 2.94 16 15 C 0.02 0.90 5.47 84.65 0.46 1.36 16 16 N -0.94 -56.49 13.96 21.45 0.30 -56.19 16 17 Si 0.93 41.00 27.47 68.60 1.88 42.88 16 18 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 19 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 20 H -0.23 -9.18 6.54 99.48 0.65 -8.53 16 21 C 0.01 0.33 9.51 22.25 0.21 0.54 16 22 C -0.18 -4.11 9.99 22.37 0.22 -3.89 16 23 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 24 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 25 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.08 0.86 7.68 -2.39 -0.02 0.84 16 27 H 0.07 0.90 7.65 -2.39 -0.02 0.88 16 28 H 0.16 2.74 6.30 -2.91 -0.02 2.72 16 29 H 0.15 3.93 7.61 -2.91 -0.02 3.91 16 30 H 0.42 15.53 8.54 -96.74 -0.83 14.71 16 31 H 0.03 1.46 7.20 -2.39 -0.02 1.44 16 32 H 0.03 1.46 7.18 -2.39 -0.02 1.45 16 33 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 34 H 0.16 3.63 7.61 -2.91 -0.02 3.61 16 35 H 0.16 2.89 8.06 -2.91 -0.02 2.86 16 Total: -1.00 -71.11 313.29 -0.93 -72.04 By element: Atomic # 1 Polarization: 20.87 SS G_CDS: 0.23 Total: 21.10 kcal Atomic # 6 Polarization: -46.31 SS G_CDS: 3.41 Total: -42.90 kcal Atomic # 7 Polarization: -99.39 SS G_CDS: -0.84 Total: -100.24 kcal Atomic # 8 Polarization: -83.05 SS G_CDS: -5.29 Total: -88.34 kcal Atomic # 14 Polarization: 41.00 SS G_CDS: 1.88 Total: 42.88 kcal Atomic # 16 Polarization: 95.78 SS G_CDS: -0.32 Total: 95.45 kcal Total: -71.11 -0.93 -72.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007306684.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.281 kcal (2) G-P(sol) polarization free energy of solvation -71.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds