Wall clock time and date at job start Tue Mar 31 2020 05:46:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86797 * 119.99871 * 2 1 4 4 H 1.48500 * 109.47026 * 270.00074 * 3 2 1 5 5 H 1.48499 * 109.47446 * 29.99802 * 3 2 1 6 6 H 1.48497 * 109.47159 * 150.00131 * 3 2 1 7 7 C 1.38805 * 120.00034 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99910 * 0.02562 * 7 2 1 9 9 O 1.34855 * 120.00341 * 179.97438 * 7 2 1 10 10 C 1.34729 * 117.00276 * 180.02562 * 9 7 2 11 11 O 1.21506 * 120.00072 * 359.97438 * 10 9 7 12 12 C 1.47677 * 120.00090 * 180.02562 * 10 9 7 13 13 C 1.39712 * 120.11538 * 0.02562 * 12 10 9 14 14 C 1.37957 * 119.99197 * 179.97438 * 13 12 10 15 15 C 1.38267 * 120.23449 * 0.02562 * 14 13 12 16 16 C 1.38992 * 120.23913 * 359.97438 * 15 14 13 17 17 N 1.39844 * 120.00074 * 180.02562 * 16 15 14 18 18 C 1.38527 * 120.00257 * 213.70195 * 17 16 15 19 19 N 1.32502 * 119.21511 * 5.24698 * 18 17 16 20 20 C 1.32268 * 120.74130 * 179.75985 * 19 18 17 21 21 C 1.38615 * 119.19329 * 0.50967 * 20 19 18 22 22 C 1.38606 * 118.55853 * 359.74993 * 21 20 19 23 23 N 1.32267 * 119.20007 * 359.97438 * 22 21 20 24 24 C 1.38643 * 120.00122 * 359.97438 * 16 15 14 25 25 H 0.97005 * 120.00403 * 0.02562 * 1 2 3 26 26 H 1.07997 * 120.00192 * 359.96175 * 13 12 10 27 27 H 1.08002 * 119.88624 * 180.02562 * 14 13 12 28 28 H 1.07999 * 119.88354 * 180.02562 * 15 14 13 29 29 H 0.97000 * 119.99725 * 33.69442 * 17 16 15 30 30 H 1.07999 * 120.40025 * 180.25722 * 20 19 18 31 31 H 1.07999 * 120.71786 * 179.76641 * 21 20 19 32 32 H 1.07998 * 120.40269 * 180.02562 * 22 21 20 33 33 H 1.07999 * 120.11332 * 180.27598 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4456 2.6527 0.7000 6 1 3.5456 1.4402 0.7000 7 6 2.0082 -1.2021 -0.0005 8 1 1.4681 -2.1374 -0.0014 9 8 3.3567 -1.2022 -0.0011 10 6 3.9684 -2.4026 -0.0021 11 8 3.3066 -3.4216 -0.0021 12 6 5.4431 -2.4799 -0.0022 13 6 6.2064 -1.3097 -0.0006 14 6 7.5840 -1.3849 -0.0001 15 6 8.2140 -2.6157 -0.0017 16 6 7.4642 -3.7860 -0.0033 17 7 8.1066 -5.0281 -0.0043 18 6 7.5386 -6.1012 -0.6714 19 7 6.4420 -5.9090 -1.3899 20 6 5.8773 -6.9111 -2.0428 21 6 6.4404 -8.1750 -1.9597 22 6 7.5843 -8.3417 -1.1951 23 7 8.1019 -7.2963 -0.5716 24 6 6.0792 -3.7219 -0.0027 25 1 -0.4851 0.8401 -0.0004 26 1 5.7181 -0.3465 0.0000 27 1 8.1724 -0.4793 0.0015 28 1 9.2928 -2.6680 -0.0009 29 1 8.9500 -5.1383 0.4619 30 1 4.9859 -6.7474 -2.6302 31 1 5.9975 -9.0115 -2.4797 32 1 8.0480 -9.3134 -1.1100 33 1 5.4948 -4.6301 0.0006 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000028133654.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:11 Heat of formation + Delta-G solvation = -0.029176 kcal Electronic energy + Delta-G solvation = -21014.260191 eV Core-core repulsion = 17619.497057 eV Total energy + Delta-G solvation = -3394.763134 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.090 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.14719 -41.35621 -40.02278 -37.46662 -36.79208 -34.73239 -34.54957 -32.62047 -31.95784 -30.08852 -27.89200 -25.72821 -25.06127 -24.69464 -22.85551 -21.82145 -20.21749 -19.50765 -19.26295 -18.15254 -17.62862 -17.07635 -16.76846 -16.65545 -16.41348 -16.26783 -15.85982 -15.57915 -15.21131 -14.68796 -14.51933 -14.26611 -14.16433 -13.98416 -13.31958 -12.82751 -12.66373 -12.46407 -12.29206 -12.18147 -11.93461 -11.85587 -11.73403 -11.23958 -10.86343 -10.30541 -10.19117 -9.94893 -8.79795 -8.58480 -6.44041 -0.28038 0.00040 0.17408 0.55389 1.32836 1.36438 1.54403 1.63339 1.74121 2.25067 2.34182 2.71613 2.89644 3.00834 3.21213 3.62069 3.82429 3.93151 4.03278 4.17411 4.26589 4.31298 4.38793 4.44238 4.67655 4.86999 4.92780 5.16044 5.34767 5.37990 5.43239 5.45511 5.63947 5.85860 5.91504 6.15708 6.33729 6.45856 6.76433 7.25105 7.52001 8.54367 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.023687 B = 0.004295 C = 0.003712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.808877 B = 6517.196914 C = 7541.019026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.017 3.983 3 Si 0.983 3.017 4 H -0.257 1.257 5 H -0.262 1.262 6 H -0.244 1.244 7 C -0.410 4.410 8 H 0.054 0.946 9 O -0.244 6.244 10 C 0.448 3.552 11 O -0.575 6.575 12 C -0.106 4.106 13 C -0.098 4.098 14 C -0.091 4.091 15 C -0.104 4.104 16 C 0.152 3.848 17 N -0.630 5.630 18 C 0.533 3.467 19 N -0.589 5.589 20 C 0.165 3.835 21 C -0.265 4.265 22 C 0.182 3.818 23 N -0.573 5.573 24 C -0.076 4.076 25 H 0.292 0.708 26 H 0.134 0.866 27 H 0.178 0.822 28 H 0.175 0.825 29 H 0.436 0.564 30 H 0.176 0.824 31 H 0.183 0.817 32 H 0.212 0.788 33 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.953 -9.278 -2.658 24.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.183 4.183 3 Si 0.802 3.198 4 H -0.181 1.181 5 H -0.187 1.187 6 H -0.167 1.167 7 C -0.486 4.486 8 H 0.072 0.928 9 O -0.152 6.152 10 C 0.297 3.703 11 O -0.473 6.473 12 C -0.108 4.108 13 C -0.117 4.117 14 C -0.109 4.109 15 C -0.124 4.124 16 C 0.056 3.944 17 N -0.262 5.262 18 C 0.177 3.823 19 N -0.311 5.311 20 C -0.001 4.001 21 C -0.289 4.289 22 C 0.016 3.984 23 N -0.295 5.295 24 C -0.098 4.098 25 H 0.102 0.898 26 H 0.152 0.848 27 H 0.196 0.804 28 H 0.192 0.808 29 H 0.278 0.722 30 H 0.193 0.807 31 H 0.200 0.800 32 H 0.228 0.772 33 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 22.911 -8.595 -2.186 24.567 hybrid contribution -1.215 -0.705 -0.303 1.437 sum 21.695 -9.299 -2.489 23.735 Atomic orbital electron populations 1.69688 1.07688 1.30481 1.47376 1.25636 0.96020 1.02827 0.93813 0.85089 0.79324 0.75288 0.80123 1.18091 1.18687 1.16737 1.20370 0.77611 0.95934 1.54689 0.92769 1.83530 1.22060 1.31721 1.77938 1.21712 0.90107 0.81609 0.76847 1.90623 1.68122 1.37258 1.51275 1.18965 0.87545 0.95848 1.08401 1.21626 0.95437 0.97001 0.97629 1.21313 0.92467 0.99081 0.98089 1.21465 1.01661 0.89530 0.99783 1.17398 0.89982 0.85438 1.01546 1.41288 1.25641 1.04847 1.54396 1.19512 0.87399 0.86851 0.88581 1.68157 1.12131 1.37536 1.13308 1.23486 0.97146 0.88532 0.90906 1.22991 1.00204 0.99913 1.05787 1.23724 0.90730 0.97281 0.86684 1.67913 1.35821 0.98793 1.26984 1.20961 0.94254 0.96278 0.98302 0.89843 0.84768 0.80423 0.80753 0.72234 0.80673 0.79965 0.77186 0.86571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.21 13.96 21.63 0.30 -55.91 16 2 C 0.02 1.03 5.49 84.89 0.47 1.50 16 3 Si 0.98 43.83 28.62 68.60 1.96 45.80 16 4 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 5 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 6 H -0.24 -10.26 7.11 99.48 0.71 -9.55 16 7 C -0.41 -26.45 10.11 67.96 0.69 -25.77 16 8 H 0.05 3.98 7.09 -2.91 -0.02 3.96 16 9 O -0.24 -13.89 7.82 11.36 0.09 -13.80 16 10 C 0.45 24.27 7.84 70.32 0.55 24.82 16 11 O -0.58 -35.31 15.59 19.82 0.31 -35.00 16 12 C -0.11 -4.38 5.87 -20.11 -0.12 -4.50 16 13 C -0.10 -3.14 9.61 22.56 0.22 -2.92 16 14 C -0.09 -1.96 10.02 22.21 0.22 -1.74 16 15 C -0.10 -2.07 9.96 22.46 0.22 -1.84 16 16 C 0.15 4.20 6.27 38.14 0.24 4.44 16 17 N -0.63 -15.15 5.49 -190.79 -1.05 -16.19 16 18 C 0.53 14.80 8.16 261.42 2.13 16.93 16 19 N -0.59 -18.52 7.11 -197.88 -1.41 -19.93 16 20 C 0.16 4.04 11.30 84.72 0.96 5.00 16 21 C -0.26 -4.37 10.16 22.45 0.23 -4.14 16 22 C 0.18 3.00 11.30 84.72 0.96 3.95 16 23 N -0.57 -13.27 10.46 -197.89 -2.07 -15.34 16 24 C -0.08 -2.89 8.09 22.68 0.18 -2.70 16 25 H 0.29 16.05 8.31 -92.70 -0.77 15.27 16 26 H 0.13 4.35 7.60 -2.91 -0.02 4.33 16 27 H 0.18 2.24 8.06 -2.91 -0.02 2.21 16 28 H 0.18 1.88 8.06 -2.91 -0.02 1.85 16 29 H 0.44 7.49 8.93 -92.71 -0.83 6.66 16 30 H 0.18 3.78 8.06 -2.91 -0.02 3.75 16 31 H 0.18 1.56 8.06 -2.91 -0.02 1.54 16 32 H 0.21 1.48 8.06 -2.91 -0.02 1.46 16 33 H 0.12 5.06 5.88 -2.91 -0.02 5.04 16 Total: -1.00 -86.42 302.65 5.43 -80.99 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: 0.35 Total: 16.36 kcal Atomic # 6 Polarization: 6.09 SS G_CDS: 6.95 Total: 13.04 kcal Atomic # 7 Polarization: -103.16 SS G_CDS: -4.22 Total: -107.38 kcal Atomic # 8 Polarization: -49.20 SS G_CDS: 0.40 Total: -48.80 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 1.96 Total: 45.80 kcal Total: -86.42 5.43 -80.99 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000028133654.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.958 kcal (2) G-P(sol) polarization free energy of solvation -86.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds