Wall clock time and date at job start Tue Mar 31 2020 05:46:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31570 * 1 3 3 Si 1.86801 * 120.00101 * 2 1 4 4 H 1.48497 * 109.47195 * 240.00155 * 3 2 1 5 5 H 1.48491 * 109.46993 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47064 * 120.00316 * 3 2 1 7 7 C 1.38642 * 120.00186 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00135 * 179.97438 * 7 2 1 9 9 O 1.34812 * 119.99421 * 359.97438 * 7 2 1 10 10 C 1.35776 * 116.99500 * 174.96795 * 9 7 2 11 11 C 1.38922 * 119.99497 * 185.06736 * 10 9 7 12 12 C 1.37995 * 120.00432 * 179.76624 * 11 10 9 13 13 C 1.38953 * 119.99164 * 0.50477 * 12 11 10 14 14 N 1.39888 * 119.99979 * 179.76823 * 13 12 11 15 15 C 1.34777 * 120.00189 * 215.11782 * 14 13 12 16 16 O 1.21536 * 119.99712 * 355.49517 * 15 14 13 17 17 C 1.48101 * 120.00174 * 175.49560 * 15 14 13 18 18 C 1.39463 * 120.09871 * 179.97438 * 17 15 14 19 19 N 1.32079 * 119.87371 * 179.97438 * 18 17 15 20 20 C 1.32148 * 120.07013 * 0.02562 * 19 18 17 21 21 C 1.38726 * 120.19767 * 359.97438 * 20 19 18 22 22 N 1.31798 * 120.13230 * 359.78928 * 21 20 19 23 23 C 1.38946 * 119.99599 * 359.74802 * 13 12 11 24 24 C 1.37996 * 119.99376 * 359.97438 * 23 13 12 25 25 H 0.96998 * 120.00087 * 359.97438 * 1 2 3 26 26 H 1.07997 * 119.99439 * 359.97438 * 11 10 9 27 27 H 1.07998 * 119.99913 * 180.25727 * 12 11 10 28 28 H 0.97005 * 119.99975 * 35.12168 * 14 13 12 29 29 H 1.07998 * 120.06363 * 359.95563 * 18 17 15 30 30 H 1.08001 * 119.89824 * 180.02562 * 20 19 18 31 31 H 1.08005 * 119.92804 * 180.02562 * 21 20 19 32 32 H 1.08001 * 120.00226 * 179.97438 * 23 13 12 33 33 H 1.07998 * 119.99208 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.1034 1.6964 -1.2125 5 1 1.2848 2.7464 0.0006 6 1 3.1035 1.6963 1.2124 7 6 2.0089 -1.2007 -0.0005 8 1 3.0889 -1.2006 -0.0010 9 8 1.3348 -2.3681 -0.0005 10 6 2.0702 -3.5045 -0.1072 11 6 1.4350 -4.7348 -0.2196 12 6 2.1823 -5.8894 -0.3329 13 6 3.5702 -5.8222 -0.3239 14 7 4.3278 -6.9930 -0.4338 15 6 5.4941 -7.1060 0.2321 16 8 5.9281 -6.1616 0.8620 17 6 6.2469 -8.3809 0.1961 18 6 7.4542 -8.4999 0.8840 19 7 8.1216 -9.6391 0.8493 20 6 7.6467 -10.6642 0.1638 21 6 6.4460 -10.5491 -0.5215 22 7 5.7712 -9.4174 -0.4885 23 6 4.2053 -4.5921 -0.2061 24 6 3.4577 -3.4372 -0.0987 25 1 -0.4850 0.8400 0.0004 26 1 0.3564 -4.7873 -0.2218 27 1 1.6884 -6.8454 -0.4245 28 1 4.0138 -7.7236 -0.9894 29 1 7.8428 -7.6620 1.4437 30 1 8.1945 -11.5946 0.1377 31 1 6.0617 -11.3898 -1.0801 32 1 5.2840 -4.5398 -0.1987 33 1 3.9514 -2.4810 -0.0067 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000032480785.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:40 Heat of formation + Delta-G solvation = 25.169400 kcal Electronic energy + Delta-G solvation = -20473.784913 eV Core-core repulsion = 17080.114472 eV Total energy + Delta-G solvation = -3393.670441 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.090 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.59423 -39.92884 -38.62326 -36.55644 -34.93905 -33.87001 -32.26797 -31.99572 -30.23067 -28.18047 -25.83516 -25.19829 -24.80071 -22.51702 -21.78968 -20.41950 -18.62212 -18.09064 -17.86801 -17.28724 -16.87232 -16.26450 -15.68308 -15.44490 -14.66161 -14.52226 -14.42928 -13.95801 -13.63928 -13.58767 -13.22120 -12.90730 -12.58470 -12.13236 -11.82790 -11.69424 -11.61759 -11.55283 -11.02048 -10.80240 -10.46401 -10.25453 -9.85860 -9.72829 -9.52397 -9.20795 -8.71751 -8.23382 -6.97474 -6.45913 -4.03315 0.00453 0.61794 2.04825 2.19132 2.67680 2.98188 3.14790 3.15845 3.18205 3.47472 3.63385 3.78448 3.97114 4.04291 4.46105 4.55902 4.72959 4.85178 5.08686 5.11088 5.24209 5.65590 5.71624 5.84235 6.09470 6.14794 6.29167 6.65323 6.70550 6.82314 6.96797 7.04130 7.21391 7.27484 7.41457 7.61242 7.73716 7.99017 8.19358 8.99640 9.68337 10.71767 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.040144 B = 0.003027 C = 0.002844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.319789 B = 9248.265877 C = 9842.958602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.040 3.960 3 Si 0.941 3.059 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.269 1.269 7 C -0.391 4.391 8 H 0.093 0.907 9 O -0.174 6.174 10 C 0.149 3.851 11 C -0.178 4.178 12 C -0.087 4.087 13 C 0.026 3.974 14 N -0.634 5.634 15 C 0.563 3.437 16 O -0.514 6.514 17 C 0.037 3.963 18 C 0.109 3.891 19 N -0.440 5.440 20 C 0.068 3.932 21 C 0.050 3.950 22 N -0.414 5.414 23 C -0.062 4.062 24 C -0.221 4.221 25 H 0.271 0.729 26 H 0.123 0.877 27 H 0.116 0.884 28 H 0.412 0.588 29 H 0.185 0.815 30 H 0.176 0.824 31 H 0.178 0.822 32 H 0.126 0.874 33 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.680 -19.403 -2.045 22.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.194 1.194 5 H -0.203 1.203 6 H -0.194 1.194 7 C -0.468 4.468 8 H 0.110 0.890 9 O -0.077 6.077 10 C 0.094 3.906 11 C -0.198 4.198 12 C -0.107 4.107 13 C -0.067 4.067 14 N -0.277 5.277 15 C 0.347 3.653 16 O -0.389 6.389 17 C -0.104 4.104 18 C -0.050 4.050 19 N -0.154 5.154 20 C -0.093 4.093 21 C -0.113 4.113 22 N -0.132 5.132 23 C -0.082 4.082 24 C -0.241 4.241 25 H 0.081 0.919 26 H 0.141 0.859 27 H 0.134 0.866 28 H 0.248 0.752 29 H 0.202 0.798 30 H 0.193 0.807 31 H 0.195 0.805 32 H 0.144 0.856 33 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 11.536 -18.462 -1.538 21.824 hybrid contribution 0.341 0.229 -0.307 0.513 sum 11.877 -18.232 -1.845 21.838 Atomic orbital electron populations 1.70033 1.05972 1.27855 1.45801 1.25295 0.95849 0.98864 0.96462 0.85773 0.78707 0.79666 0.79282 1.19447 1.20277 1.19425 1.21311 0.91874 0.80793 1.52787 0.88981 1.83973 1.34314 1.11441 1.77997 1.19429 0.90285 0.88120 0.92726 1.19997 0.99541 0.89760 1.10492 1.20370 0.91311 0.97587 1.01445 1.17257 0.89973 0.85008 1.14417 1.42969 1.20639 1.17805 1.46294 1.17640 0.81724 0.85811 0.80089 1.90826 1.67663 1.37830 1.42587 1.22271 0.95798 0.94574 0.97779 1.23893 0.90497 0.96221 0.94407 1.68651 1.31709 0.99614 1.15401 1.24124 0.94585 0.98492 0.92095 1.23868 0.93147 0.96114 0.98124 1.68362 1.31758 0.99415 1.13672 1.20855 0.99818 0.90288 0.97194 1.21098 0.93550 0.98763 1.10707 0.91924 0.85926 0.86571 0.75215 0.79826 0.80699 0.80508 0.85635 0.85082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.20 13.67 55.48 0.76 -24.44 16 2 C 0.04 1.09 5.49 -17.51 -0.10 1.00 16 3 Si 0.94 20.58 29.55 -169.99 -5.02 15.56 16 4 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 5 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 6 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 7 C -0.39 -10.95 9.48 30.88 0.29 -10.66 16 8 H 0.09 2.39 5.20 -52.49 -0.27 2.12 16 9 O -0.17 -4.95 9.75 0.02 0.00 -4.95 16 10 C 0.15 3.59 6.65 -39.08 -0.26 3.33 16 11 C -0.18 -3.69 9.98 -39.42 -0.39 -4.08 16 12 C -0.09 -1.53 9.96 -39.41 -0.39 -1.92 16 13 C 0.03 0.46 6.30 -83.65 -0.53 -0.07 16 14 N -0.63 -9.26 5.32 -10.60 -0.06 -9.32 16 15 C 0.56 8.37 7.65 -12.21 -0.09 8.28 16 16 O -0.51 -9.13 13.78 5.33 0.07 -9.06 16 17 C 0.04 0.44 6.75 -82.85 -0.56 -0.12 16 18 C 0.11 1.19 10.77 -16.99 -0.18 1.00 16 19 N -0.44 -4.27 10.49 -12.70 -0.13 -4.41 16 20 C 0.07 0.45 11.23 -17.24 -0.19 0.25 16 21 C 0.05 0.33 11.22 -17.39 -0.20 0.14 16 22 N -0.41 -4.15 9.72 -9.62 -0.09 -4.24 16 23 C -0.06 -1.24 8.69 -39.41 -0.34 -1.58 16 24 C -0.22 -4.96 9.16 -39.42 -0.36 -5.32 16 25 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 26 H 0.12 2.40 8.06 -52.49 -0.42 1.98 16 27 H 0.12 1.63 8.06 -52.49 -0.42 1.21 16 28 H 0.41 4.93 8.18 -40.82 -0.33 4.60 16 29 H 0.18 1.88 7.65 -52.49 -0.40 1.48 16 30 H 0.18 0.47 8.06 -52.49 -0.42 0.05 16 31 H 0.18 0.50 8.06 -52.48 -0.42 0.07 16 32 H 0.13 2.46 6.22 -52.49 -0.33 2.13 16 33 H 0.13 2.94 5.63 -52.49 -0.30 2.65 16 LS Contribution 300.38 15.07 4.53 4.53 Total: -1.00 -33.31 300.38 -5.71 -39.01 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -2.46 Total: 7.05 kcal Atomic # 6 Polarization: -6.44 SS G_CDS: -3.30 Total: -9.75 kcal Atomic # 7 Polarization: -42.88 SS G_CDS: 0.48 Total: -42.40 kcal Atomic # 8 Polarization: -14.08 SS G_CDS: 0.07 Total: -14.01 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -33.31 -5.71 -39.01 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032480785.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.183 kcal (2) G-P(sol) polarization free energy of solvation -33.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds