Wall clock time and date at job start Tue Mar 31 2020 05:34:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47277 * 2 1 4 4 C 1.46506 * 119.99936 * 84.99719 * 3 2 1 5 5 C 1.50701 * 109.46970 * 85.00357 * 4 3 2 6 6 H 1.08005 * 119.99694 * 359.97438 * 5 4 3 7 7 C 1.37871 * 120.00052 * 180.02562 * 5 4 3 8 8 N 1.31515 * 120.00110 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00229 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47207 * 59.99059 * 9 7 5 11 11 H 1.48496 * 109.47197 * 179.97438 * 9 7 5 12 12 H 1.48507 * 109.46829 * 299.99728 * 9 7 5 13 13 S 1.65597 * 119.99926 * 265.27680 * 3 2 1 14 14 O 1.42095 * 106.40469 * 23.26116 * 13 3 2 15 15 O 1.42098 * 106.40441 * 156.18457 * 13 3 2 16 16 C 1.76207 * 107.21624 * 269.72430 * 13 3 2 17 17 C 1.38264 * 119.94135 * 269.72771 * 16 13 3 18 18 C 1.38144 * 120.05444 * 179.72715 * 17 16 13 19 19 C 1.38737 * 119.94273 * 0.56574 * 18 17 16 20 20 O 1.35897 * 120.05433 * 179.68345 * 19 18 17 21 21 C 1.38727 * 119.88463 * 359.70868 * 19 18 17 22 22 C 1.38140 * 119.94797 * 359.97438 * 21 19 18 23 23 H 1.08996 * 109.47521 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.47307 * 300.00055 * 1 2 3 25 25 H 1.08995 * 109.46954 * 59.99844 * 1 2 3 26 26 H 1.08991 * 109.46933 * 239.99603 * 2 1 3 27 27 H 1.09000 * 109.46920 * 119.99673 * 2 1 3 28 28 H 1.08999 * 109.46864 * 204.99706 * 4 3 2 29 29 H 1.08999 * 109.46950 * 325.00088 * 4 3 2 30 30 H 0.97000 * 119.99969 * 180.02562 * 8 7 5 31 31 H 1.08010 * 119.97397 * 359.97438 * 17 16 13 32 32 H 1.07997 * 120.03160 * 180.24936 * 18 17 16 33 33 H 0.96700 * 114.00191 * 270.02075 * 20 19 18 34 34 H 1.08004 * 120.02755 * 179.97438 * 21 19 18 35 35 H 1.08006 * 119.97130 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1087 1.2640 5 6 3.4948 1.7888 1.8824 6 1 4.1721 1.1111 1.3839 7 6 3.8525 2.3605 3.0849 8 7 3.0276 3.1854 3.6920 9 14 5.5095 1.9646 3.8511 10 1 6.5944 2.3728 2.9229 11 1 5.6512 2.7019 5.1323 12 1 5.6003 0.5046 4.1070 13 16 2.4057 2.1224 -1.4293 14 8 1.6809 1.4412 -2.4440 15 8 2.2940 3.5203 -1.1995 16 6 4.1112 1.8034 -1.7368 17 6 5.0727 2.6781 -1.2655 18 6 6.4108 2.4273 -1.5004 19 6 6.7887 1.3029 -2.2199 20 8 8.1040 1.0574 -2.4578 21 6 5.8216 0.4299 -2.6965 22 6 4.4853 0.6817 -2.4533 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 2.0923 3.1802 1.0756 29 1 1.3617 1.8097 1.9453 30 1 3.2794 3.5880 4.5379 31 1 4.7778 3.5560 -0.7098 32 1 7.1618 3.1086 -1.1287 33 1 8.4355 1.4502 -3.2768 34 1 6.1131 -0.4459 -3.2572 35 1 3.7320 0.0021 -2.8238 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042451352.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:05 Heat of formation + Delta-G solvation = -92.374706 kcal Electronic energy + Delta-G solvation = -21137.429696 eV Core-core repulsion = 17841.813360 eV Total energy + Delta-G solvation = -3295.616336 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.087 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.59870 -36.72973 -36.70284 -36.06014 -35.25005 -32.72806 -30.95266 -30.01172 -29.82912 -26.63893 -23.19077 -22.84631 -22.75139 -21.68106 -18.59033 -18.50427 -17.24702 -16.85928 -16.29364 -15.96814 -15.46113 -15.22415 -14.44797 -14.41414 -13.88922 -13.41151 -13.37116 -13.05239 -12.83895 -12.33444 -12.14411 -12.06754 -11.97511 -11.69604 -11.50886 -11.35282 -11.05305 -10.97550 -10.60157 -10.52345 -10.49492 -10.37385 -10.01038 -9.79886 -8.93464 -8.92203 -8.50403 -8.07454 -6.12498 -4.19115 0.81043 1.14942 1.43229 3.26077 3.31377 3.33175 3.37837 3.76689 4.06512 4.34904 4.36400 4.72821 4.99085 5.07158 5.21880 5.40355 5.42088 5.62248 5.73818 5.77591 5.82247 6.03834 6.09152 6.11327 6.30611 6.32560 6.38455 6.64411 6.68601 6.81586 7.31736 7.40564 7.51533 7.60869 7.84554 8.13150 8.86059 9.47453 10.95291 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.011643 B = 0.009418 C = 0.006103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2404.216204 B = 2972.221259 C = 4586.490038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.128 3.872 3 N -0.980 5.980 4 C 0.244 3.756 5 C -0.542 4.542 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.889 5.889 9 Si 0.890 3.110 10 H -0.275 1.275 11 H -0.286 1.286 12 H -0.276 1.276 13 S 2.691 3.309 14 O -0.977 6.977 15 O -0.958 6.958 16 C -0.674 4.674 17 C 0.019 3.981 18 C -0.168 4.168 19 C 0.150 3.850 20 O -0.500 6.500 21 C -0.174 4.174 22 C -0.009 4.009 23 H 0.059 0.941 24 H 0.061 0.939 25 H 0.056 0.944 26 H 0.064 0.936 27 H 0.082 0.918 28 H 0.053 0.947 29 H 0.043 0.957 30 H 0.265 0.735 31 H 0.149 0.851 32 H 0.135 0.865 33 H 0.392 0.608 34 H 0.132 0.868 35 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.591 -4.708 -11.290 12.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.002 3.998 3 N -0.820 5.820 4 C 0.122 3.878 5 C -0.581 4.581 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.527 5.527 9 Si 0.718 3.282 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.202 1.202 13 S 2.780 3.220 14 O -0.968 6.968 15 O -0.948 6.948 16 C -0.759 4.759 17 C 0.000 4.000 18 C -0.188 4.188 19 C 0.106 3.894 20 O -0.311 6.311 21 C -0.194 4.194 22 C -0.029 4.029 23 H 0.078 0.922 24 H 0.080 0.920 25 H 0.075 0.925 26 H 0.082 0.918 27 H 0.100 0.900 28 H 0.071 0.929 29 H 0.061 0.939 30 H 0.075 0.925 31 H 0.167 0.833 32 H 0.153 0.847 33 H 0.249 0.751 34 H 0.150 0.850 35 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 2.999 -4.415 -11.101 12.317 hybrid contribution 1.915 -0.330 0.400 1.984 sum 4.915 -4.745 -10.701 12.695 Atomic orbital electron populations 1.22213 0.96684 1.01514 1.02531 1.21040 0.93795 0.82630 1.02376 1.57398 1.77987 1.23152 1.23435 1.19267 0.97428 0.92388 0.78741 1.21527 1.02267 1.28166 1.06171 0.92048 1.24913 0.97116 0.94796 0.96820 1.69918 1.35947 1.29717 1.17113 0.86681 0.84295 0.78585 0.78655 1.20072 1.21139 1.20190 1.01928 0.73635 0.73703 0.72768 1.93506 1.69961 1.75836 1.57476 1.93549 1.85975 1.29989 1.85290 1.31279 1.27181 1.05052 1.12408 1.20904 0.91525 0.96814 0.90799 1.21532 0.96967 0.97994 1.02271 1.18707 0.83004 0.92786 0.94949 1.84797 1.21864 1.77896 1.46546 1.21405 0.92819 1.01217 1.03911 1.20752 0.96172 0.93818 0.92109 0.92234 0.91977 0.92494 0.91756 0.89991 0.92864 0.93934 0.92503 0.83330 0.84745 0.75094 0.84981 0.84283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.60 10.24 37.16 0.38 -2.22 16 2 C 0.13 2.17 6.06 -4.04 -0.02 2.14 16 3 N -0.98 -19.81 2.77 -115.66 -0.32 -20.13 16 4 C 0.24 5.89 5.44 -5.19 -0.03 5.86 16 5 C -0.54 -14.05 9.38 -34.44 -0.32 -14.37 16 6 H 0.06 1.57 7.81 -52.48 -0.41 1.16 16 7 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 8 N -0.89 -25.06 13.29 55.43 0.74 -24.32 16 9 Si 0.89 20.87 29.54 -169.99 -5.02 15.85 16 10 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 13 S 2.69 52.73 5.65 -107.50 -0.61 52.12 16 14 O -0.98 -19.04 16.24 -57.17 -0.93 -19.96 16 15 O -0.96 -21.46 15.82 -57.17 -0.90 -22.37 16 16 C -0.67 -12.02 5.98 -39.56 -0.24 -12.25 16 17 C 0.02 0.34 9.52 -39.61 -0.38 -0.04 16 18 C -0.17 -2.64 9.99 -39.43 -0.39 -3.03 16 19 C 0.15 2.15 6.70 -39.22 -0.26 1.89 16 20 O -0.50 -5.98 13.50 -19.42 -0.26 -6.24 16 21 C -0.17 -2.41 9.99 -39.44 -0.39 -2.81 16 22 C -0.01 -0.14 9.51 -39.61 -0.38 -0.52 16 23 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 25 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 26 H 0.06 0.95 7.61 -51.93 -0.40 0.56 16 27 H 0.08 1.39 8.11 -51.93 -0.42 0.97 16 28 H 0.05 1.40 6.91 -51.93 -0.36 1.04 16 29 H 0.04 1.06 8.11 -51.93 -0.42 0.64 16 30 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 31 H 0.15 2.73 7.61 -52.48 -0.40 2.33 16 32 H 0.13 1.84 8.06 -52.49 -0.42 1.42 16 33 H 0.39 2.49 9.06 45.56 0.41 2.90 16 34 H 0.13 1.45 8.06 -52.48 -0.42 1.03 16 35 H 0.14 1.85 7.61 -52.48 -0.40 1.45 16 LS Contribution 318.07 15.07 4.79 4.79 Total: -1.00 -32.25 318.07 -8.29 -40.54 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -3.64 Total: 3.36 kcal Atomic # 6 Polarization: -21.51 SS G_CDS: -2.13 Total: -23.64 kcal Atomic # 7 Polarization: -44.87 SS G_CDS: 0.42 Total: -44.45 kcal Atomic # 8 Polarization: -46.48 SS G_CDS: -2.10 Total: -48.57 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Atomic # 16 Polarization: 52.73 SS G_CDS: -0.61 Total: 52.12 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -32.25 -8.29 -40.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042451352.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.832 kcal (2) G-P(sol) polarization free energy of solvation -32.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds