Wall clock time and date at job start Tue Mar 31 2020 05:34:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47277 * 2 1 4 4 C 1.46506 * 119.99936 * 84.99719 * 3 2 1 5 5 C 1.50701 * 109.46970 * 85.00357 * 4 3 2 6 6 H 1.08005 * 119.99694 * 359.97438 * 5 4 3 7 7 C 1.37871 * 120.00052 * 180.02562 * 5 4 3 8 8 N 1.31515 * 120.00110 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00229 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47207 * 59.99059 * 9 7 5 11 11 H 1.48496 * 109.47197 * 179.97438 * 9 7 5 12 12 H 1.48507 * 109.46829 * 299.99728 * 9 7 5 13 13 S 1.65597 * 119.99926 * 265.27680 * 3 2 1 14 14 O 1.42095 * 106.40469 * 23.26116 * 13 3 2 15 15 O 1.42098 * 106.40441 * 156.18457 * 13 3 2 16 16 C 1.76207 * 107.21624 * 269.72430 * 13 3 2 17 17 C 1.38264 * 119.94135 * 269.72771 * 16 13 3 18 18 C 1.38144 * 120.05444 * 179.72715 * 17 16 13 19 19 C 1.38737 * 119.94273 * 0.56574 * 18 17 16 20 20 O 1.35897 * 120.05433 * 179.68345 * 19 18 17 21 21 C 1.38727 * 119.88463 * 359.70868 * 19 18 17 22 22 C 1.38140 * 119.94797 * 359.97438 * 21 19 18 23 23 H 1.08996 * 109.47521 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.47307 * 300.00055 * 1 2 3 25 25 H 1.08995 * 109.46954 * 59.99844 * 1 2 3 26 26 H 1.08991 * 109.46933 * 239.99603 * 2 1 3 27 27 H 1.09000 * 109.46920 * 119.99673 * 2 1 3 28 28 H 1.08999 * 109.46864 * 204.99706 * 4 3 2 29 29 H 1.08999 * 109.46950 * 325.00088 * 4 3 2 30 30 H 0.97000 * 119.99969 * 180.02562 * 8 7 5 31 31 H 1.08010 * 119.97397 * 359.97438 * 17 16 13 32 32 H 1.07997 * 120.03160 * 180.24936 * 18 17 16 33 33 H 0.96700 * 114.00191 * 270.02075 * 20 19 18 34 34 H 1.08004 * 120.02755 * 179.97438 * 21 19 18 35 35 H 1.08006 * 119.97130 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1087 1.2640 5 6 3.4948 1.7888 1.8824 6 1 4.1721 1.1111 1.3839 7 6 3.8525 2.3605 3.0849 8 7 3.0276 3.1854 3.6920 9 14 5.5095 1.9646 3.8511 10 1 6.5944 2.3728 2.9229 11 1 5.6512 2.7019 5.1323 12 1 5.6003 0.5046 4.1070 13 16 2.4057 2.1224 -1.4293 14 8 1.6809 1.4412 -2.4440 15 8 2.2940 3.5203 -1.1995 16 6 4.1112 1.8034 -1.7368 17 6 5.0727 2.6781 -1.2655 18 6 6.4108 2.4273 -1.5004 19 6 6.7887 1.3029 -2.2199 20 8 8.1040 1.0574 -2.4578 21 6 5.8216 0.4299 -2.6965 22 6 4.4853 0.6817 -2.4533 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 2.0923 3.1802 1.0756 29 1 1.3617 1.8097 1.9453 30 1 3.2794 3.5880 4.5379 31 1 4.7778 3.5560 -0.7098 32 1 7.1618 3.1086 -1.1287 33 1 8.4355 1.4502 -3.2768 34 1 6.1131 -0.4459 -3.2572 35 1 3.7320 0.0021 -2.8238 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042451352.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:05 Heat of formation + Delta-G solvation = -116.165970 kcal Electronic energy + Delta-G solvation = -21138.461363 eV Core-core repulsion = 17841.813360 eV Total energy + Delta-G solvation = -3296.648003 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.087 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.71542 -38.31769 -37.79318 -37.66325 -36.87269 -34.69499 -32.13947 -31.52873 -31.05101 -28.49318 -24.94688 -24.04880 -23.96897 -23.22046 -20.05597 -19.55158 -18.71449 -18.63305 -18.11134 -17.39364 -16.74386 -16.51098 -16.19172 -15.63269 -15.40798 -14.80235 -14.67539 -14.56156 -14.24306 -13.82360 -13.59850 -13.51070 -13.34638 -13.20777 -13.14389 -13.00465 -12.76636 -12.67376 -12.24387 -12.13843 -12.02053 -11.69937 -11.58063 -11.54257 -10.57848 -10.13414 -10.11373 -9.74655 -8.17377 -6.30335 -0.55698 -0.22815 0.24320 1.40969 1.41659 1.49436 1.99925 2.38103 2.45765 2.81804 3.08812 3.14457 3.33430 3.80822 3.90020 4.00750 4.23608 4.38200 4.48067 4.52486 4.62317 4.74162 4.88519 4.97793 5.02421 5.08690 5.17891 5.22405 5.28281 5.44375 5.53950 5.68683 5.76098 5.94767 6.10518 6.72809 6.81401 7.39534 8.90359 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.011643 B = 0.009418 C = 0.006103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2404.216204 B = 2972.221259 C = 4586.490038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.117 3.883 3 N -0.986 5.986 4 C 0.259 3.741 5 C -0.541 4.541 6 H 0.065 0.935 7 C 0.016 3.984 8 N -0.925 5.925 9 Si 0.950 3.050 10 H -0.270 1.270 11 H -0.284 1.284 12 H -0.268 1.268 13 S 2.698 3.302 14 O -0.978 6.978 15 O -0.997 6.997 16 C -0.689 4.689 17 C -0.006 4.006 18 C -0.179 4.179 19 C 0.164 3.836 20 O -0.502 6.502 21 C -0.167 4.167 22 C -0.011 4.011 23 H 0.093 0.907 24 H 0.047 0.953 25 H 0.050 0.950 26 H 0.091 0.909 27 H 0.080 0.920 28 H 0.023 0.977 29 H 0.027 0.973 30 H 0.266 0.734 31 H 0.127 0.873 32 H 0.148 0.852 33 H 0.420 0.580 34 H 0.169 0.831 35 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.594 -7.026 -12.590 15.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.008 4.008 3 N -0.825 5.825 4 C 0.135 3.865 5 C -0.580 4.580 6 H 0.083 0.917 7 C -0.183 4.183 8 N -0.565 5.565 9 Si 0.775 3.225 10 H -0.195 1.195 11 H -0.209 1.209 12 H -0.193 1.193 13 S 2.791 3.209 14 O -0.968 6.968 15 O -0.988 6.988 16 C -0.778 4.778 17 C -0.026 4.026 18 C -0.198 4.198 19 C 0.119 3.881 20 O -0.317 6.317 21 C -0.186 4.186 22 C -0.031 4.031 23 H 0.111 0.889 24 H 0.066 0.934 25 H 0.069 0.931 26 H 0.109 0.891 27 H 0.099 0.901 28 H 0.041 0.959 29 H 0.045 0.955 30 H 0.075 0.925 31 H 0.145 0.855 32 H 0.166 0.834 33 H 0.281 0.719 34 H 0.187 0.813 35 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 4.971 -6.740 -12.430 14.988 hybrid contribution 1.383 0.347 0.682 1.580 sum 6.354 -6.393 -11.748 14.808 Atomic orbital electron populations 1.22205 0.95536 1.03429 1.01552 1.21354 0.94911 0.80975 1.03602 1.57304 1.78889 1.24303 1.22010 1.18785 0.96460 0.91122 0.80086 1.21774 1.02704 1.27562 1.06009 0.91667 1.25696 1.00382 0.94765 0.97506 1.70039 1.37819 1.31007 1.17608 0.85734 0.80317 0.78661 0.77799 1.19540 1.20940 1.19297 1.01386 0.74405 0.72716 0.72379 1.93490 1.70780 1.75518 1.57017 1.93495 1.87016 1.32523 1.85730 1.30843 1.25175 1.06920 1.14826 1.20846 0.92925 0.96755 0.92050 1.21711 0.96154 0.99187 1.02730 1.18752 0.84171 0.91719 0.93440 1.84735 1.20343 1.78052 1.48529 1.21775 0.91783 1.01922 1.03107 1.21068 0.97744 0.92994 0.91255 0.88862 0.93360 0.93067 0.89083 0.90121 0.95934 0.95456 0.92502 0.85494 0.83391 0.71872 0.81343 0.82200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.99 10.24 71.98 0.74 -4.25 16 2 C 0.12 3.84 6.06 86.38 0.52 4.37 16 3 N -0.99 -40.46 2.77 -519.85 -1.44 -41.90 16 4 C 0.26 13.03 5.44 85.63 0.47 13.49 16 5 C -0.54 -28.47 9.38 25.60 0.24 -28.23 16 6 H 0.07 3.32 7.81 -2.91 -0.02 3.30 16 7 C 0.02 0.89 5.46 84.65 0.46 1.35 16 8 N -0.93 -53.48 13.29 21.45 0.28 -53.20 16 9 Si 0.95 42.69 29.54 68.60 2.03 44.72 16 10 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 11 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 12 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 13 S 2.70 107.36 5.65 -56.49 -0.32 107.04 16 14 O -0.98 -37.44 16.24 -128.00 -2.08 -39.52 16 15 O -1.00 -47.03 15.82 -128.00 -2.02 -49.05 16 16 C -0.69 -24.16 5.98 22.28 0.13 -24.03 16 17 C -0.01 -0.22 9.52 22.25 0.21 -0.01 16 18 C -0.18 -5.31 9.99 22.37 0.22 -5.09 16 19 C 0.16 4.14 6.70 22.51 0.15 4.29 16 20 O -0.50 -9.80 13.50 -92.39 -1.25 -11.05 16 21 C -0.17 -3.94 9.99 22.36 0.22 -3.72 16 22 C -0.01 -0.32 9.51 22.25 0.21 -0.11 16 23 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 24 H 0.05 1.54 8.14 -2.38 -0.02 1.52 16 25 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 26 H 0.09 2.50 7.61 -2.39 -0.02 2.48 16 27 H 0.08 2.67 8.11 -2.39 -0.02 2.65 16 28 H 0.02 1.27 6.91 -2.39 -0.02 1.25 16 29 H 0.03 1.44 8.11 -2.39 -0.02 1.42 16 30 H 0.27 14.59 8.31 -92.71 -0.77 13.82 16 31 H 0.13 4.97 7.61 -2.91 -0.02 4.95 16 32 H 0.15 3.84 8.06 -2.91 -0.02 3.82 16 33 H 0.42 3.37 9.06 -74.06 -0.67 2.70 16 34 H 0.17 2.75 8.06 -2.91 -0.02 2.73 16 35 H 0.16 3.72 7.61 -2.91 -0.02 3.69 16 Total: -1.00 -70.11 318.07 -0.78 -70.89 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: 0.43 Total: 14.02 kcal Atomic # 6 Polarization: -45.52 SS G_CDS: 3.58 Total: -41.94 kcal Atomic # 7 Polarization: -93.95 SS G_CDS: -1.15 Total: -95.10 kcal Atomic # 8 Polarization: -94.27 SS G_CDS: -5.35 Total: -99.62 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.72 kcal Atomic # 16 Polarization: 107.36 SS G_CDS: -0.32 Total: 107.04 kcal Total: -70.11 -0.78 -70.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042451352.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.278 kcal (2) G-P(sol) polarization free energy of solvation -70.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds