Wall clock time and date at job start Tue Mar 31 2020 05:37:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42890 * 1 3 3 C 1.35901 * 117.00204 * 2 1 4 4 C 1.38733 * 120.06087 * 179.97438 * 3 2 1 5 5 C 1.38139 * 119.94603 * 180.02562 * 4 3 2 6 6 C 1.38271 * 120.05628 * 0.02833 * 5 4 3 7 7 C 1.50697 * 119.94202 * 179.97438 * 6 5 4 8 8 N 1.46501 * 109.46874 * 90.00052 * 7 6 5 9 9 C 1.46506 * 120.00098 * 84.99996 * 8 7 6 10 10 S 1.65599 * 120.00111 * 264.99675 * 8 7 6 11 11 O 1.42099 * 106.40401 * 23.54139 * 10 8 7 12 12 O 1.42103 * 106.40122 * 156.46115 * 10 8 7 13 13 C 1.76205 * 107.21913 * 270.00122 * 10 8 7 14 14 H 1.07994 * 119.99577 * 359.97438 * 13 10 8 15 15 C 1.37875 * 119.99777 * 180.02562 * 13 10 8 16 16 N 1.31509 * 120.00309 * 359.97438 * 15 13 10 17 17 Si 1.86798 * 119.99707 * 180.02562 * 15 13 10 18 18 H 1.48506 * 109.47265 * 59.99784 * 17 15 13 19 19 H 1.48499 * 109.47305 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47277 * 299.99869 * 17 15 13 21 21 C 1.38265 * 120.11225 * 0.24841 * 6 5 4 22 22 C 1.38150 * 120.05162 * 359.45386 * 21 6 5 23 23 H 1.08997 * 109.47351 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47436 * 299.99549 * 1 2 3 25 25 H 1.09001 * 109.47484 * 60.00157 * 1 2 3 26 26 H 1.07998 * 120.02413 * 0.02562 * 4 3 2 27 27 H 1.08002 * 119.97347 * 180.02562 * 5 4 3 28 28 H 1.09001 * 109.47323 * 330.00065 * 7 6 5 29 29 H 1.09001 * 109.47037 * 209.99567 * 7 6 5 30 30 H 1.09001 * 109.47060 * 270.00243 * 9 8 7 31 31 H 1.09004 * 109.47073 * 29.99732 * 9 8 7 32 32 H 1.09000 * 109.47212 * 149.99814 * 9 8 7 33 33 H 0.97001 * 120.00292 * 180.02562 * 16 15 13 34 34 H 1.07996 * 119.97272 * 179.70265 * 21 6 5 35 35 H 1.07997 * 120.02531 * 180.24992 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4313 1.2849 0.0005 5 6 4.0560 2.5170 0.0011 6 6 3.3018 3.6759 0.0017 7 6 3.9860 5.0186 0.0028 8 7 4.2081 5.4546 -1.3780 9 6 3.1456 6.1536 -2.1054 10 16 5.6600 5.1575 -2.1168 11 8 6.2360 4.0494 -1.4387 12 8 5.4081 5.1674 -3.5153 13 6 6.7041 6.5386 -1.7894 14 1 6.3371 7.3648 -1.1988 15 6 7.9892 6.5647 -2.2883 16 7 8.4359 5.5588 -3.0079 17 14 9.0963 8.0286 -1.9406 18 1 9.2777 8.1748 -0.4739 19 1 10.4177 7.8136 -2.5832 20 1 8.4740 9.2609 -2.4877 21 6 1.9210 3.6048 0.0069 22 6 1.2914 2.3751 0.0002 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 4.0208 0.3800 0.0005 27 1 5.1344 2.5751 0.0011 28 1 4.9437 4.9379 0.5169 29 1 3.3577 5.7460 0.5169 30 1 2.5238 5.4265 -2.6277 31 1 2.5328 6.7164 -1.4012 32 1 3.5897 6.8379 -2.8283 33 1 9.3402 5.5770 -3.3586 34 1 1.3341 4.5114 0.0122 35 1 0.2129 2.3202 0.0002 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044292758.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:00 Heat of formation + Delta-G solvation = -100.095390 kcal Electronic energy + Delta-G solvation = -20631.036179 eV Core-core repulsion = 17335.085049 eV Total energy + Delta-G solvation = -3295.951130 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.087 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.97537 -37.72734 -35.23922 -35.14923 -33.91313 -33.05041 -30.90853 -30.49523 -27.69006 -26.34558 -26.09304 -23.76153 -22.40183 -20.90202 -18.73348 -18.04152 -17.18170 -16.32043 -15.99392 -15.72412 -15.41168 -15.11540 -14.86612 -14.29758 -13.83015 -13.61358 -13.29313 -13.18322 -12.96646 -12.46976 -12.08792 -11.99593 -11.89788 -11.49026 -11.31505 -11.19742 -11.19230 -10.95927 -10.62945 -10.58213 -10.24149 -10.19199 -10.06020 -9.23124 -8.91331 -8.73567 -8.25618 -7.90498 -6.68502 -5.31443 1.58382 1.61203 2.33074 3.08717 3.13313 3.18840 3.32099 3.96108 4.08638 4.64962 4.68154 4.86648 5.03532 5.04544 5.09144 5.26970 5.34255 5.46405 5.65165 5.69599 5.80391 5.84844 6.00045 6.05894 6.19027 6.27648 6.31082 6.47292 6.49793 6.57168 6.73296 7.01455 7.07043 7.33154 7.51064 7.60857 7.97442 8.89636 10.24809 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.035884 B = 0.004478 C = 0.004319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.106995 B = 6251.446172 C = 6480.983275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.321 6.321 3 C 0.118 3.882 4 C -0.155 4.155 5 C -0.057 4.057 6 C -0.137 4.137 7 C 0.172 3.828 8 N -1.012 6.012 9 C 0.103 3.897 10 S 2.715 3.285 11 O -1.000 7.000 12 O -1.004 7.004 13 C -1.024 5.024 14 H 0.101 0.899 15 C 0.133 3.867 16 N -0.845 5.845 17 Si 0.919 3.081 18 H -0.264 1.264 19 H -0.276 1.276 20 H -0.264 1.264 21 C -0.068 4.068 22 C -0.217 4.217 23 H 0.096 0.904 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.129 0.871 27 H 0.153 0.847 28 H 0.092 0.908 29 H 0.074 0.926 30 H 0.042 0.958 31 H 0.057 0.943 32 H 0.071 0.929 33 H 0.291 0.709 34 H 0.121 0.879 35 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.501 -3.422 7.389 15.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.235 6.235 3 C 0.073 3.927 4 C -0.173 4.173 5 C -0.076 4.076 6 C -0.139 4.139 7 C 0.046 3.954 8 N -0.846 5.846 9 C -0.043 4.043 10 S 2.816 3.184 11 O -0.990 6.990 12 O -0.995 6.995 13 C -1.157 5.157 14 H 0.119 0.881 15 C -0.085 4.085 16 N -0.475 5.475 17 Si 0.743 3.257 18 H -0.188 1.188 19 H -0.201 1.201 20 H -0.189 1.189 21 C -0.087 4.087 22 C -0.236 4.236 23 H 0.114 0.886 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.147 0.853 27 H 0.171 0.829 28 H 0.110 0.890 29 H 0.093 0.907 30 H 0.061 0.939 31 H 0.076 0.924 32 H 0.090 0.910 33 H 0.102 0.898 34 H 0.139 0.861 35 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -13.117 -4.469 6.772 15.424 hybrid contribution 0.320 1.452 0.321 1.521 sum -12.797 -3.018 7.093 14.939 Atomic orbital electron populations 1.22986 0.78939 1.03487 1.01196 1.86052 1.20969 1.27382 1.89063 1.19070 0.92442 0.83870 0.97270 1.20496 0.91073 0.98938 1.06820 1.21449 1.01925 0.90549 0.93659 1.20400 0.93672 0.96578 1.03296 1.19970 1.00891 0.91001 0.83585 1.58012 1.31650 1.72711 1.22243 1.21247 0.90997 0.96076 0.96013 1.00554 0.70436 0.75290 0.72157 1.93311 1.76041 1.54011 1.75646 1.93354 1.84876 1.88732 1.32521 1.30631 1.11911 1.25985 1.47166 0.88064 1.24740 0.96978 0.96642 0.90102 1.69887 1.19443 1.29973 1.28153 0.86225 0.78543 0.81331 0.79608 1.18821 1.20100 1.18880 1.20794 0.93976 0.96707 0.97255 1.21102 0.99470 0.92456 1.10570 0.88606 0.92882 0.92820 0.85317 0.82944 0.89022 0.90745 0.93907 0.92438 0.91029 0.89837 0.86086 0.85949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.81 101.05 0.99 1.25 16 2 O -0.32 -4.34 10.50 -19.43 -0.20 -4.54 16 3 C 0.12 1.78 6.69 -39.21 -0.26 1.51 16 4 C -0.15 -2.52 9.99 -39.43 -0.39 -2.92 16 5 C -0.06 -1.02 9.27 -39.61 -0.37 -1.39 16 6 C -0.14 -2.30 5.46 -104.60 -0.57 -2.87 16 7 C 0.17 2.93 5.49 -5.19 -0.03 2.90 16 8 N -1.01 -20.45 3.17 -123.04 -0.39 -20.84 16 9 C 0.10 1.74 10.33 59.85 0.62 2.36 16 10 S 2.72 71.87 4.88 -107.50 -0.52 71.35 16 11 O -1.00 -27.86 15.11 -57.17 -0.86 -28.72 16 12 O -1.00 -29.73 17.09 -57.17 -0.98 -30.70 16 13 C -1.02 -28.09 9.75 30.60 0.30 -27.79 16 14 H 0.10 2.54 7.81 -52.49 -0.41 2.13 16 15 C 0.13 3.71 5.46 -17.82 -0.10 3.62 16 16 N -0.84 -24.81 13.19 55.43 0.73 -24.08 16 17 Si 0.92 20.48 29.54 -169.99 -5.02 15.46 16 18 H -0.26 -5.65 7.11 56.52 0.40 -5.25 16 19 H -0.28 -5.89 7.11 56.52 0.40 -5.48 16 20 H -0.26 -5.69 7.11 56.52 0.40 -5.29 16 21 C -0.07 -0.97 9.69 -39.60 -0.38 -1.36 16 22 C -0.22 -2.94 9.04 -39.43 -0.36 -3.29 16 23 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 24 H 0.05 0.41 7.66 -51.93 -0.40 0.01 16 25 H 0.05 0.44 7.66 -51.93 -0.40 0.04 16 26 H 0.13 1.92 8.06 -52.49 -0.42 1.49 16 27 H 0.15 2.97 6.60 -52.49 -0.35 2.63 16 28 H 0.09 1.61 7.55 -51.93 -0.39 1.22 16 29 H 0.07 1.00 7.90 -51.93 -0.41 0.59 16 30 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.75 7.94 -51.93 -0.41 0.34 16 32 H 0.07 1.27 7.79 -51.93 -0.40 0.86 16 33 H 0.29 7.71 8.31 -40.82 -0.34 7.37 16 34 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 35 H 0.12 1.30 6.30 -52.49 -0.33 0.97 16 LS Contribution 313.70 15.07 4.73 4.73 Total: -1.00 -34.85 313.70 -7.40 -42.26 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -4.33 Total: 3.08 kcal Atomic # 6 Polarization: -27.43 SS G_CDS: -0.55 Total: -27.98 kcal Atomic # 7 Polarization: -45.26 SS G_CDS: 0.34 Total: -44.92 kcal Atomic # 8 Polarization: -61.92 SS G_CDS: -2.04 Total: -63.97 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Atomic # 16 Polarization: 71.87 SS G_CDS: -0.52 Total: 71.35 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -34.85 -7.40 -42.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044292758.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.838 kcal (2) G-P(sol) polarization free energy of solvation -34.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds