Wall clock time and date at job start Tue Mar 31 2020 05:37:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35897 * 116.99817 * 2 1 4 4 C 1.38754 * 120.05719 * 359.95522 * 3 2 1 5 5 C 1.38122 * 119.94946 * 180.02562 * 4 3 2 6 6 C 1.38295 * 120.05026 * 0.02562 * 5 4 3 7 7 C 1.38242 * 120.11401 * 0.02562 * 6 5 4 8 8 C 1.38169 * 120.05494 * 359.94904 * 7 6 5 9 9 C 1.50694 * 120.02852 * 180.02562 * 8 7 6 10 10 N 1.46502 * 109.47607 * 260.00607 * 9 8 7 11 11 C 1.46494 * 119.99819 * 274.99766 * 10 9 8 12 12 S 1.65602 * 119.99588 * 94.99850 * 10 9 8 13 13 O 1.42106 * 106.39866 * 203.53796 * 12 10 9 14 14 O 1.42097 * 106.40715 * 336.46112 * 12 10 9 15 15 C 1.76201 * 107.21687 * 90.00614 * 12 10 9 16 16 H 1.07998 * 119.99960 * 359.97438 * 15 12 10 17 17 C 1.37877 * 119.99647 * 179.97438 * 15 12 10 18 18 N 1.31509 * 120.00324 * 359.97438 * 17 15 12 19 19 Si 1.86804 * 119.99650 * 179.97438 * 17 15 12 20 20 H 1.48506 * 109.47083 * 89.99964 * 19 17 15 21 21 H 1.48501 * 109.47087 * 209.99888 * 19 17 15 22 22 H 1.48503 * 109.47413 * 330.00169 * 19 17 15 23 23 H 1.09000 * 109.47023 * 60.00240 * 1 2 3 24 24 H 1.09002 * 109.46809 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47655 * 300.00222 * 1 2 3 26 26 H 1.08002 * 120.02758 * 0.04150 * 4 3 2 27 27 H 1.07997 * 119.97891 * 180.29657 * 5 4 3 28 28 H 1.07997 * 119.93892 * 179.97438 * 6 5 4 29 29 H 1.07998 * 119.97158 * 179.97438 * 7 6 5 30 30 H 1.09001 * 109.47053 * 20.00832 * 9 8 7 31 31 H 1.09002 * 109.47103 * 140.00310 * 9 8 7 32 32 H 1.09003 * 109.46959 * 90.00133 * 11 10 9 33 33 H 1.09003 * 109.47160 * 209.99388 * 11 10 9 34 34 H 1.08999 * 109.47621 * 330.00122 * 11 10 9 35 35 H 0.97005 * 119.99780 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0009 5 6 1.9207 3.6048 -0.0015 6 6 3.3018 3.6758 -0.0016 7 6 4.0559 2.5172 -0.0017 8 6 3.4311 1.2849 -0.0007 9 6 4.2537 0.0223 -0.0002 10 7 4.3189 -0.5187 -1.3602 11 6 3.2465 -1.3847 -1.8561 12 16 5.6050 -0.1512 -2.3366 13 8 5.1541 -0.3185 -3.6738 14 8 6.1463 1.0674 -1.8456 15 6 6.8333 -1.3855 -2.0677 16 1 6.6516 -2.1839 -1.3635 17 6 8.0265 -1.3321 -2.7565 18 7 8.2477 -0.3602 -3.6144 19 14 9.3291 -2.6402 -2.4710 20 1 9.1183 -3.7639 -3.4188 21 1 10.6758 -2.0540 -2.6900 22 1 9.2288 -3.1429 -1.0772 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 0.2128 2.3203 -0.0010 27 1 1.3339 4.5114 0.0026 28 1 3.7920 4.6381 -0.0024 29 1 5.1344 2.5754 -0.0023 30 1 5.2613 0.2452 0.3508 31 1 3.7927 -0.7115 0.6610 32 1 2.4777 -0.7752 -2.3312 33 1 3.6537 -2.0873 -2.5832 34 1 2.8099 -1.9359 -1.0232 35 1 9.0870 -0.3229 -4.0993 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044509844.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:04 Heat of formation + Delta-G solvation = -98.164498 kcal Electronic energy + Delta-G solvation = -21166.703937 eV Core-core repulsion = 17870.836536 eV Total energy + Delta-G solvation = -3295.867400 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.087 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.04076 -37.24913 -35.42348 -35.16131 -33.84597 -33.00970 -31.22285 -29.85530 -27.47906 -26.50304 -26.06590 -23.97685 -21.86759 -21.10266 -18.67739 -17.91428 -17.04473 -16.25816 -15.85346 -15.69476 -15.59003 -14.92766 -14.76119 -14.27281 -14.03304 -13.55347 -13.36962 -13.11523 -12.44683 -12.35496 -12.02791 -11.95120 -11.90076 -11.43983 -11.19542 -11.14794 -10.98978 -10.93174 -10.70611 -10.57098 -10.18540 -10.17068 -10.01701 -9.20512 -8.84306 -8.62414 -8.14547 -7.90261 -6.64613 -5.26611 1.53783 1.69144 2.40255 3.09514 3.16207 3.23029 3.41329 3.98676 4.11914 4.68674 4.78360 4.90496 5.01536 5.11793 5.15249 5.32804 5.43117 5.57712 5.58846 5.80094 5.88157 5.94706 5.96559 6.19057 6.27220 6.31978 6.46337 6.49627 6.58128 6.66753 6.81669 6.97705 7.09341 7.37409 7.57179 7.70110 8.03141 8.93900 10.28490 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.027399 B = 0.005610 C = 0.005115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.704922 B = 4989.902576 C = 5473.058136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.309 6.309 3 C 0.138 3.862 4 C -0.220 4.220 5 C -0.086 4.086 6 C -0.162 4.162 7 C -0.055 4.055 8 C -0.133 4.133 9 C 0.178 3.822 10 N -1.009 6.009 11 C 0.112 3.888 12 S 2.715 3.285 13 O -1.006 7.006 14 O -1.001 7.001 15 C -1.022 5.022 16 H 0.101 0.899 17 C 0.133 3.867 18 N -0.846 5.846 19 Si 0.919 3.081 20 H -0.267 1.267 21 H -0.275 1.275 22 H -0.263 1.263 23 H 0.052 0.948 24 H 0.097 0.903 25 H 0.051 0.949 26 H 0.122 0.878 27 H 0.119 0.881 28 H 0.122 0.878 29 H 0.145 0.855 30 H 0.090 0.910 31 H 0.077 0.923 32 H 0.039 0.961 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.726 1.903 8.959 15.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.222 6.222 3 C 0.092 3.908 4 C -0.238 4.238 5 C -0.105 4.105 6 C -0.180 4.180 7 C -0.074 4.074 8 C -0.135 4.135 9 C 0.052 3.948 10 N -0.843 5.843 11 C -0.035 4.035 12 S 2.816 3.184 13 O -0.996 6.996 14 O -0.991 6.991 15 C -1.155 5.155 16 H 0.120 0.880 17 C -0.085 4.085 18 N -0.476 5.476 19 Si 0.743 3.257 20 H -0.192 1.192 21 H -0.200 1.200 22 H -0.187 1.187 23 H 0.071 0.929 24 H 0.115 0.885 25 H 0.069 0.931 26 H 0.140 0.860 27 H 0.137 0.863 28 H 0.140 0.860 29 H 0.162 0.838 30 H 0.108 0.892 31 H 0.095 0.905 32 H 0.057 0.943 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -12.535 2.517 8.240 15.211 hybrid contribution 0.507 -0.971 0.295 1.135 sum -12.028 1.546 8.536 14.830 Atomic orbital electron populations 1.22997 0.79221 1.03574 1.00959 1.86129 1.20566 1.26875 1.88587 1.18847 0.91756 0.84018 0.96144 1.21112 0.99497 0.92530 1.10710 1.20876 0.94734 0.96655 0.98199 1.21083 0.93761 0.98584 1.04615 1.21289 1.01340 0.90702 0.94059 1.19882 0.90836 0.97155 1.05640 1.19824 0.99389 0.91103 0.84477 1.57924 1.38163 1.62960 1.25254 1.21175 0.90195 0.93341 0.98753 1.00537 0.71658 0.74742 0.71480 1.93349 1.82175 1.87928 1.36184 1.93324 1.78226 1.46587 1.80972 1.30675 1.17636 1.30817 1.36347 0.88027 1.24748 0.97796 0.95119 0.90820 1.69904 1.26653 1.29607 1.21424 0.86191 0.79057 0.80700 0.79753 1.19239 1.20001 1.18660 0.92914 0.88496 0.93086 0.85966 0.86318 0.86009 0.83772 0.89207 0.90453 0.94273 0.91610 0.92096 0.89973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.81 101.05 0.99 1.26 16 2 O -0.31 -4.35 8.08 -19.42 -0.16 -4.51 16 3 C 0.14 2.17 6.66 -39.22 -0.26 1.91 16 4 C -0.22 -2.99 9.04 -39.43 -0.36 -3.34 16 5 C -0.09 -1.15 10.04 -39.60 -0.40 -1.54 16 6 C -0.16 -2.41 10.04 -39.56 -0.40 -2.81 16 7 C -0.06 -0.97 9.35 -39.61 -0.37 -1.34 16 8 C -0.13 -2.35 5.47 -104.48 -0.57 -2.93 16 9 C 0.18 3.30 5.18 -5.20 -0.03 3.27 16 10 N -1.01 -21.58 3.17 -123.05 -0.39 -21.97 16 11 C 0.11 2.07 9.11 59.84 0.54 2.61 16 12 S 2.72 73.75 4.88 -107.50 -0.52 73.22 16 13 O -1.01 -30.38 17.09 -57.17 -0.98 -31.36 16 14 O -1.00 -28.55 16.16 -57.17 -0.92 -29.47 16 15 C -1.02 -28.54 9.75 30.60 0.30 -28.24 16 16 H 0.10 2.61 7.81 -52.49 -0.41 2.20 16 17 C 0.13 3.75 5.46 -17.82 -0.10 3.65 16 18 N -0.85 -25.15 13.19 55.43 0.73 -24.42 16 19 Si 0.92 20.77 29.54 -169.99 -5.02 15.75 16 20 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 21 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 22 H -0.26 -5.71 7.11 56.52 0.40 -5.31 16 23 H 0.05 0.47 7.66 -51.93 -0.40 0.08 16 24 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 25 H 0.05 0.41 7.66 -51.93 -0.40 0.01 16 26 H 0.12 1.31 6.30 -52.49 -0.33 0.98 16 27 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 28 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 29 H 0.14 2.65 7.52 -52.49 -0.39 2.25 16 30 H 0.09 1.67 7.47 -51.93 -0.39 1.28 16 31 H 0.08 1.23 7.68 -51.93 -0.40 0.83 16 32 H 0.04 0.71 8.06 -51.93 -0.42 0.29 16 33 H 0.07 1.25 7.79 -51.93 -0.40 0.84 16 34 H 0.06 0.94 7.63 -51.93 -0.40 0.54 16 35 H 0.29 7.74 8.31 -40.82 -0.34 7.40 16 LS Contribution 311.50 15.07 4.69 4.69 Total: -1.00 -35.40 311.50 -7.55 -42.95 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -4.34 Total: 2.61 kcal Atomic # 6 Polarization: -26.86 SS G_CDS: -0.64 Total: -27.50 kcal Atomic # 7 Polarization: -46.73 SS G_CDS: 0.34 Total: -46.39 kcal Atomic # 8 Polarization: -63.28 SS G_CDS: -2.06 Total: -65.34 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Atomic # 16 Polarization: 73.75 SS G_CDS: -0.52 Total: 73.22 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -35.40 -7.55 -42.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044509844.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.212 kcal (2) G-P(sol) polarization free energy of solvation -35.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds