Wall clock time and date at job start Tue Mar 31 2020 05:37:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35897 * 116.99817 * 2 1 4 4 C 1.38754 * 120.05719 * 359.95522 * 3 2 1 5 5 C 1.38122 * 119.94946 * 180.02562 * 4 3 2 6 6 C 1.38295 * 120.05026 * 0.02562 * 5 4 3 7 7 C 1.38242 * 120.11401 * 0.02562 * 6 5 4 8 8 C 1.38169 * 120.05494 * 359.94904 * 7 6 5 9 9 C 1.50694 * 120.02852 * 180.02562 * 8 7 6 10 10 N 1.46502 * 109.47607 * 260.00607 * 9 8 7 11 11 C 1.46494 * 119.99819 * 274.99766 * 10 9 8 12 12 S 1.65602 * 119.99588 * 94.99850 * 10 9 8 13 13 O 1.42106 * 106.39866 * 203.53796 * 12 10 9 14 14 O 1.42097 * 106.40715 * 336.46112 * 12 10 9 15 15 C 1.76201 * 107.21687 * 90.00614 * 12 10 9 16 16 H 1.07998 * 119.99960 * 359.97438 * 15 12 10 17 17 C 1.37877 * 119.99647 * 179.97438 * 15 12 10 18 18 N 1.31509 * 120.00324 * 359.97438 * 17 15 12 19 19 Si 1.86804 * 119.99650 * 179.97438 * 17 15 12 20 20 H 1.48506 * 109.47083 * 89.99964 * 19 17 15 21 21 H 1.48501 * 109.47087 * 209.99888 * 19 17 15 22 22 H 1.48503 * 109.47413 * 330.00169 * 19 17 15 23 23 H 1.09000 * 109.47023 * 60.00240 * 1 2 3 24 24 H 1.09002 * 109.46809 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47655 * 300.00222 * 1 2 3 26 26 H 1.08002 * 120.02758 * 0.04150 * 4 3 2 27 27 H 1.07997 * 119.97891 * 180.29657 * 5 4 3 28 28 H 1.07997 * 119.93892 * 179.97438 * 6 5 4 29 29 H 1.07998 * 119.97158 * 179.97438 * 7 6 5 30 30 H 1.09001 * 109.47053 * 20.00832 * 9 8 7 31 31 H 1.09002 * 109.47103 * 140.00310 * 9 8 7 32 32 H 1.09003 * 109.46959 * 90.00133 * 11 10 9 33 33 H 1.09003 * 109.47160 * 209.99388 * 11 10 9 34 34 H 1.08999 * 109.47621 * 330.00122 * 11 10 9 35 35 H 0.97005 * 119.99780 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0009 5 6 1.9207 3.6048 -0.0015 6 6 3.3018 3.6758 -0.0016 7 6 4.0559 2.5172 -0.0017 8 6 3.4311 1.2849 -0.0007 9 6 4.2537 0.0223 -0.0002 10 7 4.3189 -0.5187 -1.3602 11 6 3.2465 -1.3847 -1.8561 12 16 5.6050 -0.1512 -2.3366 13 8 5.1541 -0.3185 -3.6738 14 8 6.1463 1.0674 -1.8456 15 6 6.8333 -1.3855 -2.0677 16 1 6.6516 -2.1839 -1.3635 17 6 8.0265 -1.3321 -2.7565 18 7 8.2477 -0.3602 -3.6144 19 14 9.3291 -2.6402 -2.4710 20 1 9.1183 -3.7639 -3.4188 21 1 10.6758 -2.0540 -2.6900 22 1 9.2288 -3.1429 -1.0772 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 0.2128 2.3203 -0.0010 27 1 1.3339 4.5114 0.0026 28 1 3.7920 4.6381 -0.0024 29 1 5.1344 2.5754 -0.0023 30 1 5.2613 0.2452 0.3508 31 1 3.7927 -0.7115 0.6610 32 1 2.4777 -0.7752 -2.3312 33 1 3.6537 -2.0873 -2.5832 34 1 2.8099 -1.9359 -1.0232 35 1 9.0870 -0.3229 -4.0993 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044509844.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:04 Heat of formation + Delta-G solvation = -124.398384 kcal Electronic energy + Delta-G solvation = -21167.841523 eV Core-core repulsion = 17870.836536 eV Total energy + Delta-G solvation = -3297.004987 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.087 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.13887 -38.33970 -37.37668 -36.93642 -36.06352 -35.14371 -32.50288 -30.96083 -28.49936 -28.24589 -27.69910 -25.49171 -22.97324 -22.36475 -20.75594 -19.21023 -18.71195 -18.18489 -17.13766 -17.02407 -16.93994 -16.60213 -16.26954 -15.88645 -15.31728 -15.13890 -14.76065 -14.56793 -13.96207 -13.75226 -13.71606 -13.43863 -13.21196 -13.00741 -12.94725 -12.68943 -12.45704 -12.40310 -12.29441 -12.10810 -12.01863 -11.88967 -11.75010 -11.24465 -10.93550 -9.88908 -9.74439 -9.06049 -8.72925 -7.47609 0.21232 0.50269 0.57227 1.33880 1.34480 1.50817 2.21598 2.46024 2.58299 2.74211 3.06321 3.78737 3.87863 3.92357 4.13185 4.24981 4.30247 4.35691 4.48414 4.51897 4.56798 4.65583 4.72786 4.78370 4.81077 4.94589 4.99906 5.08546 5.17600 5.32253 5.42127 5.55666 5.69407 5.91534 5.92633 6.00874 6.54060 6.78631 8.21680 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.027399 B = 0.005610 C = 0.005115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.704922 B = 4989.902576 C = 5473.058136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.324 6.324 3 C 0.135 3.865 4 C -0.217 4.217 5 C -0.078 4.078 6 C -0.173 4.173 7 C -0.083 4.083 8 C -0.163 4.163 9 C 0.175 3.825 10 N -1.004 6.004 11 C 0.108 3.892 12 S 2.716 3.284 13 O -1.047 7.047 14 O -1.028 7.028 15 C -1.042 5.042 16 H 0.117 0.883 17 C 0.069 3.931 18 N -0.894 5.894 19 Si 0.991 3.009 20 H -0.254 1.254 21 H -0.262 1.262 22 H -0.247 1.247 23 H 0.059 0.941 24 H 0.118 0.882 25 H 0.068 0.932 26 H 0.157 0.843 27 H 0.157 0.843 28 H 0.139 0.861 29 H 0.118 0.882 30 H 0.075 0.925 31 H 0.105 0.895 32 H 0.041 0.959 33 H 0.055 0.945 34 H 0.097 0.903 35 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.489 1.069 10.246 17.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.237 6.237 3 C 0.089 3.911 4 C -0.236 4.236 5 C -0.096 4.096 6 C -0.191 4.191 7 C -0.102 4.102 8 C -0.166 4.166 9 C 0.050 3.950 10 N -0.841 5.841 11 C -0.037 4.037 12 S 2.818 3.182 13 O -1.038 7.038 14 O -1.018 7.018 15 C -1.176 5.176 16 H 0.135 0.865 17 C -0.143 4.143 18 N -0.526 5.526 19 Si 0.808 3.192 20 H -0.178 1.178 21 H -0.186 1.186 22 H -0.171 1.171 23 H 0.077 0.923 24 H 0.137 0.863 25 H 0.087 0.913 26 H 0.174 0.826 27 H 0.175 0.825 28 H 0.157 0.843 29 H 0.136 0.864 30 H 0.094 0.906 31 H 0.123 0.877 32 H 0.060 0.940 33 H 0.074 0.926 34 H 0.116 0.884 35 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -14.324 1.693 9.531 17.289 hybrid contribution 0.879 -0.668 -0.054 1.106 sum -13.445 1.025 9.478 16.482 Atomic orbital electron populations 1.23344 0.76727 1.05527 1.02095 1.86088 1.23102 1.26209 1.88300 1.18908 0.91155 0.85455 0.95625 1.21536 1.01180 0.91753 1.09082 1.21328 0.94114 0.98220 0.95956 1.21338 0.94875 0.98335 1.04532 1.21258 1.00534 0.92236 0.96161 1.19833 0.92167 0.96428 1.08158 1.19991 0.99382 0.92584 0.83005 1.57464 1.37270 1.63573 1.25842 1.21366 0.89290 0.93038 0.99990 1.00153 0.72353 0.74517 0.71189 1.93282 1.83000 1.88359 1.39112 1.93279 1.79339 1.47958 1.81214 1.31017 1.18302 1.31452 1.36779 0.86452 1.26042 1.00549 0.97649 0.90105 1.69999 1.27953 1.31872 1.22763 0.85132 0.75949 0.77481 0.80602 1.17845 1.18562 1.17060 0.92284 0.86337 0.91298 0.82553 0.82549 0.84348 0.86386 0.90641 0.87719 0.94011 0.92616 0.88433 0.89154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.81 113.37 1.11 1.38 16 2 O -0.32 -8.29 8.08 -92.39 -0.75 -9.04 16 3 C 0.13 4.01 6.66 22.51 0.15 4.16 16 4 C -0.22 -5.23 9.04 22.37 0.20 -5.03 16 5 C -0.08 -1.86 10.04 22.26 0.22 -1.64 16 6 C -0.17 -5.04 10.04 22.28 0.22 -4.81 16 7 C -0.08 -3.01 9.35 22.25 0.21 -2.81 16 8 C -0.16 -5.84 5.47 -19.77 -0.11 -5.95 16 9 C 0.18 6.57 5.18 85.63 0.44 7.01 16 10 N -1.00 -43.49 3.17 -543.23 -1.72 -45.22 16 11 C 0.11 3.94 9.11 127.77 1.16 5.11 16 12 S 2.72 152.84 4.88 -56.49 -0.28 152.56 16 13 O -1.05 -65.75 17.09 -128.00 -2.19 -67.93 16 14 O -1.03 -61.71 16.16 -128.00 -2.07 -63.78 16 15 C -1.04 -59.22 9.75 67.73 0.66 -58.56 16 16 H 0.12 6.05 7.81 -2.91 -0.02 6.02 16 17 C 0.07 3.94 5.46 84.66 0.46 4.40 16 18 N -0.89 -54.58 13.19 21.45 0.28 -54.30 16 19 Si 0.99 42.08 29.54 68.60 2.03 44.10 16 20 H -0.25 -10.19 7.11 99.48 0.71 -9.49 16 21 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 22 H -0.25 -9.81 7.11 99.48 0.71 -9.10 16 23 H 0.06 0.84 7.66 -2.39 -0.02 0.82 16 24 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 25 H 0.07 0.82 7.66 -2.39 -0.02 0.80 16 26 H 0.16 2.63 6.30 -2.91 -0.02 2.61 16 27 H 0.16 2.52 8.06 -2.91 -0.02 2.49 16 28 H 0.14 3.40 8.06 -2.91 -0.02 3.38 16 29 H 0.12 4.75 7.52 -2.91 -0.02 4.72 16 30 H 0.08 2.96 7.47 -2.39 -0.02 2.95 16 31 H 0.10 3.25 7.68 -2.39 -0.02 3.23 16 32 H 0.04 1.48 8.06 -2.39 -0.02 1.46 16 33 H 0.06 2.12 7.79 -2.39 -0.02 2.10 16 34 H 0.10 2.80 7.63 -2.39 -0.02 2.78 16 35 H 0.30 16.32 8.31 -92.70 -0.77 15.55 16 Total: -1.00 -79.59 311.50 1.14 -78.45 By element: Atomic # 1 Polarization: 20.80 SS G_CDS: 1.09 Total: 21.90 kcal Atomic # 6 Polarization: -61.48 SS G_CDS: 4.74 Total: -56.74 kcal Atomic # 7 Polarization: -98.08 SS G_CDS: -1.44 Total: -99.52 kcal Atomic # 8 Polarization: -135.75 SS G_CDS: -5.00 Total: -140.75 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.10 kcal Atomic # 16 Polarization: 152.84 SS G_CDS: -0.28 Total: 152.56 kcal Total: -79.59 1.14 -78.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044509844.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.951 kcal (2) G-P(sol) polarization free energy of solvation -79.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds