Wall clock time and date at job start Tue Mar 31 2020 05:33:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35902 * 116.99937 * 2 1 4 4 C 1.38732 * 120.05795 * 180.02562 * 3 2 1 5 5 C 1.38139 * 119.94256 * 180.02562 * 4 3 2 6 6 C 1.38261 * 120.06195 * 0.02562 * 5 4 3 7 7 S 1.76197 * 119.95006 * 179.97438 * 6 5 4 8 8 O 1.42101 * 106.40124 * 336.46054 * 7 6 5 9 9 O 1.42097 * 106.40542 * 203.53831 * 7 6 5 10 10 N 1.65600 * 107.21650 * 89.99994 * 7 6 5 11 11 C 1.46500 * 120.00234 * 65.00083 * 10 7 6 12 12 H 1.08993 * 109.47133 * 335.00240 * 11 10 7 13 13 C 1.53000 * 109.47022 * 94.99909 * 11 10 7 14 14 C 1.50701 * 109.47377 * 214.99837 * 11 10 7 15 15 H 1.08007 * 119.99635 * 326.11368 * 14 11 10 16 16 C 1.37872 * 120.00022 * 146.10985 * 14 11 10 17 17 N 1.31513 * 120.00110 * 178.33395 * 16 14 11 18 18 Si 1.86805 * 119.99880 * 358.33332 * 16 14 11 19 19 H 1.48495 * 109.47252 * 274.91126 * 18 16 14 20 20 H 1.48496 * 109.47094 * 34.91562 * 18 16 14 21 21 H 1.48504 * 109.46974 * 154.91084 * 18 16 14 22 22 C 1.38270 * 120.10743 * 0.25114 * 6 5 4 23 23 C 1.38142 * 120.05503 * 359.45659 * 22 6 5 24 24 H 1.09008 * 109.46650 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47038 * 299.99728 * 1 2 3 26 26 H 1.09001 * 109.47051 * 60.00495 * 1 2 3 27 27 H 1.08003 * 120.02470 * 359.97438 * 4 3 2 28 28 H 1.08006 * 119.97029 * 179.97438 * 5 4 3 29 29 H 0.97001 * 119.99530 * 245.00120 * 10 7 6 30 30 H 1.09000 * 109.47207 * 174.54712 * 13 11 10 31 31 H 1.09002 * 109.47069 * 294.54630 * 13 11 10 32 32 H 1.09008 * 109.47298 * 54.54497 * 13 11 10 33 33 H 0.97000 * 119.99672 * 179.97438 * 17 16 14 34 34 H 1.08003 * 119.97244 * 179.70257 * 22 6 5 35 35 H 1.08002 * 120.03213 * 180.25455 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4313 1.2849 -0.0005 5 6 4.0560 2.5170 0.0000 6 6 3.3018 3.6759 0.0016 7 16 4.1017 5.2458 0.0030 8 8 5.3976 5.0355 0.5466 9 8 3.1705 6.1701 0.5488 10 7 4.3234 5.6843 -1.5784 11 6 3.1645 5.9441 -2.4361 12 1 2.3004 5.4009 -2.0535 13 6 2.8616 7.4438 -2.4437 14 6 3.4652 5.4852 -3.8397 15 1 4.4693 5.5633 -4.2298 16 6 2.4586 4.9655 -4.6256 17 7 2.7139 4.5955 -5.8615 18 14 0.7321 4.7871 -3.9349 19 1 0.6238 3.5021 -3.1987 20 1 0.4506 5.9134 -3.0090 21 1 -0.2506 4.8042 -5.0482 22 6 1.9210 3.6048 0.0079 23 6 1.2915 2.3752 0.0013 24 1 -0.3633 -1.0278 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 4.0209 0.3800 -0.0005 28 1 5.1345 2.5752 0.0000 29 1 5.2208 5.7692 -1.9369 30 1 2.0622 7.6494 -3.1556 31 1 2.5500 7.7566 -1.4472 32 1 3.7569 7.9938 -2.7339 33 1 2.0058 4.2296 -6.4142 34 1 1.3341 4.5114 0.0140 35 1 0.2129 2.3201 0.0021 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050336943.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:17 Heat of formation + Delta-G solvation = -112.913740 kcal Electronic energy + Delta-G solvation = -21032.883872 eV Core-core repulsion = 17736.376897 eV Total energy + Delta-G solvation = -3296.506975 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.087 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.24569 -38.56260 -38.32056 -37.30172 -36.88450 -34.24534 -32.35106 -31.50311 -30.75271 -28.36417 -27.22318 -24.12388 -23.63985 -22.58739 -20.66344 -19.58385 -19.38488 -18.37846 -17.91562 -17.60357 -17.18551 -16.82603 -16.14589 -15.85730 -15.37490 -14.92767 -14.71799 -14.60391 -14.45294 -14.31075 -13.99462 -13.64489 -13.44625 -13.17569 -13.11590 -12.95136 -12.89411 -12.56176 -12.36997 -12.24916 -12.06725 -11.93104 -11.80038 -11.19172 -10.81163 -10.25254 -10.18273 -9.69736 -8.32294 -6.37622 -0.52405 -0.16863 0.16608 1.31027 1.34511 1.43225 2.06538 2.12502 2.30859 2.41622 2.83447 3.06771 3.34686 3.61005 3.74393 4.09488 4.20361 4.21550 4.29905 4.35239 4.43228 4.63032 4.65527 4.76614 4.85773 4.86496 4.96870 5.00603 5.06334 5.37936 5.49434 5.50459 5.55263 6.16827 6.28014 6.33267 6.69723 7.27597 8.83341 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.012967 B = 0.008807 C = 0.006165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2158.738340 B = 3178.473870 C = 4540.316394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.321 6.321 3 C 0.172 3.828 4 C -0.179 4.179 5 C 0.012 3.988 6 C -0.721 4.721 7 S 2.706 3.294 8 O -0.988 6.988 9 O -0.984 6.984 10 N -1.097 6.097 11 C 0.246 3.754 12 H 0.042 0.958 13 C -0.160 4.160 14 C -0.517 4.517 15 H 0.051 0.949 16 C 0.025 3.975 17 N -0.936 5.936 18 Si 0.904 3.096 19 H -0.257 1.257 20 H -0.234 1.234 21 H -0.283 1.283 22 C 0.000 4.000 23 C -0.234 4.234 24 H 0.129 0.871 25 H 0.074 0.926 26 H 0.059 0.941 27 H 0.162 0.838 28 H 0.160 0.840 29 H 0.419 0.581 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.058 0.942 33 H 0.268 0.732 34 H 0.146 0.854 35 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.218 -7.215 12.562 15.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.233 6.233 3 C 0.125 3.875 4 C -0.198 4.198 5 C -0.008 4.008 6 C -0.809 4.809 7 S 2.797 3.203 8 O -0.979 6.979 9 O -0.974 6.974 10 N -0.857 5.857 11 C 0.140 3.860 12 H 0.060 0.940 13 C -0.220 4.220 14 C -0.557 4.557 15 H 0.069 0.931 16 C -0.174 4.174 17 N -0.576 5.576 18 Si 0.726 3.274 19 H -0.182 1.182 20 H -0.157 1.157 21 H -0.209 1.209 22 C -0.019 4.019 23 C -0.254 4.254 24 H 0.148 0.852 25 H 0.092 0.908 26 H 0.078 0.922 27 H 0.180 0.820 28 H 0.177 0.823 29 H 0.254 0.746 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.163 0.837 35 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -5.168 -7.015 13.226 15.838 hybrid contribution -0.797 -0.593 -0.877 1.325 sum -5.965 -7.608 12.349 15.683 Atomic orbital electron populations 1.23509 0.75874 1.06346 1.02598 1.86086 1.24038 1.25980 1.87221 1.19476 0.92945 0.84775 0.90277 1.20821 0.91872 0.99381 1.07719 1.20961 1.00845 0.90243 0.88718 1.30748 1.05504 1.21662 1.23035 1.01203 0.72700 0.73811 0.72542 1.93505 1.39646 1.86979 1.77756 1.93514 1.65286 1.61082 1.77561 1.55503 1.15930 1.84639 1.29657 1.18727 0.83965 0.93756 0.89533 0.94048 1.22377 1.01617 0.97341 1.00624 1.21271 0.96762 1.40864 0.96770 0.93093 1.25716 1.02637 0.94196 0.94901 1.70005 1.34904 1.43645 1.09025 0.86371 0.80349 0.81079 0.79554 1.18185 1.15700 1.20870 1.20960 0.92571 0.99222 0.89194 1.21621 1.01897 0.91775 1.10057 0.85245 0.90753 0.92193 0.82050 0.82260 0.74579 0.92673 0.92735 0.92266 0.92323 0.83672 0.82123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.16 9.81 113.37 1.11 1.27 16 2 O -0.32 -7.58 10.50 -92.45 -0.97 -8.55 16 3 C 0.17 4.77 6.69 22.51 0.15 4.92 16 4 C -0.18 -4.94 9.99 22.36 0.22 -4.71 16 5 C 0.01 0.35 9.51 22.25 0.21 0.56 16 6 C -0.72 -24.27 5.82 22.28 0.13 -24.14 16 7 S 2.71 96.91 5.65 -56.49 -0.32 96.59 16 8 O -0.99 -37.09 17.28 -128.00 -2.21 -39.30 16 9 O -0.98 -38.26 16.63 -128.00 -2.13 -40.38 16 10 N -1.10 -41.80 5.46 -172.53 -0.94 -42.74 16 11 C 0.25 10.70 2.35 44.25 0.10 10.80 16 12 H 0.04 1.77 4.60 -2.39 -0.01 1.76 16 13 C -0.16 -6.41 9.45 71.98 0.68 -5.73 16 14 C -0.52 -27.01 9.11 25.60 0.23 -26.77 16 15 H 0.05 2.92 8.06 -2.91 -0.02 2.89 16 16 C 0.03 1.36 5.47 84.65 0.46 1.82 16 17 N -0.94 -54.99 13.96 21.45 0.30 -54.69 16 18 Si 0.90 39.83 26.65 68.60 1.83 41.65 16 19 H -0.26 -10.74 7.11 99.48 0.71 -10.04 16 20 H -0.23 -9.39 6.85 99.48 0.68 -8.71 16 21 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 22 C 0.00 0.00 8.91 22.25 0.20 0.19 16 23 C -0.23 -6.53 9.04 22.37 0.20 -6.33 16 24 H 0.13 1.24 8.14 -2.38 -0.02 1.22 16 25 H 0.07 0.91 7.66 -2.39 -0.02 0.89 16 26 H 0.06 0.93 7.66 -2.39 -0.02 0.91 16 27 H 0.16 3.55 8.06 -2.91 -0.02 3.53 16 28 H 0.16 4.23 7.61 -2.91 -0.02 4.21 16 29 H 0.42 14.80 8.83 -96.75 -0.85 13.95 16 30 H 0.05 2.20 7.81 -2.39 -0.02 2.18 16 31 H 0.05 2.02 7.74 -2.39 -0.02 2.00 16 32 H 0.06 2.25 8.14 -2.38 -0.02 2.23 16 33 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 34 H 0.15 4.37 7.61 -2.91 -0.02 4.35 16 35 H 0.16 3.42 6.30 -2.91 -0.02 3.41 16 Total: -1.00 -67.94 309.87 -0.50 -68.44 By element: Atomic # 1 Polarization: 26.85 SS G_CDS: 0.24 Total: 27.09 kcal Atomic # 6 Polarization: -51.82 SS G_CDS: 3.71 Total: -48.11 kcal Atomic # 7 Polarization: -96.79 SS G_CDS: -0.64 Total: -97.43 kcal Atomic # 8 Polarization: -82.93 SS G_CDS: -5.31 Total: -88.24 kcal Atomic # 14 Polarization: 39.83 SS G_CDS: 1.83 Total: 41.65 kcal Atomic # 16 Polarization: 96.91 SS G_CDS: -0.32 Total: 96.59 kcal Total: -67.94 -0.50 -68.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050336943.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.472 kcal (2) G-P(sol) polarization free energy of solvation -67.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds