Wall clock time and date at job start Tue Mar 31 2020 05:33:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35900 * 117.00265 * 2 1 4 4 C 1.38726 * 120.05752 * 179.97438 * 3 2 1 5 5 C 1.38149 * 119.94477 * 180.02562 * 4 3 2 6 6 C 1.38266 * 120.05411 * 0.28574 * 5 4 3 7 7 S 1.76196 * 119.94521 * 179.70060 * 6 5 4 8 8 O 1.42097 * 106.40564 * 203.53509 * 7 6 5 9 9 O 1.42103 * 106.40251 * 336.45766 * 7 6 5 10 10 N 1.65600 * 107.21994 * 89.99464 * 7 6 5 11 11 C 1.46497 * 120.00199 * 65.00095 * 10 7 6 12 12 H 1.08996 * 109.46939 * 24.99688 * 11 10 7 13 13 C 1.53007 * 109.47217 * 265.00459 * 11 10 7 14 14 C 1.50701 * 109.47452 * 145.00151 * 11 10 7 15 15 H 1.07992 * 119.99948 * 0.02562 * 14 11 10 16 16 C 1.37875 * 119.99843 * 180.02562 * 14 11 10 17 17 N 1.31515 * 120.00476 * 359.97438 * 16 14 11 18 18 Si 1.86798 * 119.99674 * 179.97438 * 16 14 11 19 19 H 1.48501 * 109.47144 * 359.97438 * 18 16 14 20 20 H 1.48505 * 109.47399 * 119.99871 * 18 16 14 21 21 H 1.48503 * 109.47382 * 239.99684 * 18 16 14 22 22 C 1.38264 * 120.10762 * 359.44038 * 6 5 4 23 23 C 1.38144 * 120.05928 * 0.55731 * 22 6 5 24 24 H 1.08995 * 109.47128 * 59.99997 * 1 2 3 25 25 H 1.09000 * 109.47439 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47423 * 299.99641 * 1 2 3 27 27 H 1.08000 * 120.02799 * 0.02562 * 4 3 2 28 28 H 1.08002 * 119.97030 * 179.97438 * 5 4 3 29 29 H 0.97002 * 120.00054 * 245.00677 * 10 7 6 30 30 H 1.08999 * 109.46929 * 299.99798 * 13 11 10 31 31 H 1.08994 * 109.47289 * 59.99677 * 13 11 10 32 32 H 1.09001 * 109.47297 * 179.97438 * 13 11 10 33 33 H 0.96996 * 120.00041 * 180.02562 * 17 16 14 34 34 H 1.08007 * 119.96975 * 180.26053 * 22 6 5 35 35 H 1.08006 * 120.02939 * 179.70744 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4313 1.2848 0.0005 5 6 4.0561 2.5169 0.0011 6 6 3.3019 3.6757 0.0070 7 16 4.1018 5.2457 0.0157 8 8 3.1703 6.1677 0.5646 9 8 5.3973 5.0329 0.5594 10 7 4.3250 5.6909 -1.5637 11 6 3.1668 5.9543 -2.4211 12 1 2.3166 6.2449 -1.8041 13 6 2.8169 4.6899 -3.2085 14 6 3.4953 7.0689 -3.3808 15 1 4.4696 7.5341 -3.3549 16 6 2.5521 7.4946 -4.2919 17 7 1.3658 6.9277 -4.3238 18 14 2.9591 8.8765 -5.4809 19 1 4.3489 9.3420 -5.2418 20 1 2.8352 8.3821 -6.8757 21 1 2.0166 10.0046 -5.2701 22 6 1.9211 3.6047 0.0008 23 6 1.2915 2.3750 0.0002 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 4.0208 0.3799 0.0005 28 1 5.1346 2.5749 0.0019 29 1 5.2226 5.7771 -1.9211 30 1 3.6672 4.3992 -3.8255 31 1 2.5793 3.8838 -2.5144 32 1 1.9549 4.8858 -3.8462 33 1 0.7024 7.2269 -4.9650 34 1 1.3342 4.5114 0.0012 35 1 0.2129 2.3201 0.0001 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050336946.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:19 Heat of formation + Delta-G solvation = -112.119940 kcal Electronic energy + Delta-G solvation = -20752.345361 eV Core-core repulsion = 17455.872807 eV Total energy + Delta-G solvation = -3296.472554 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.087 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.20112 -38.53162 -38.26954 -37.21894 -36.86389 -34.10369 -32.29251 -31.45775 -30.09165 -28.30321 -27.21791 -24.06760 -23.54436 -22.79483 -20.47715 -19.44268 -19.14900 -18.47884 -17.68939 -17.46601 -16.97263 -16.76817 -16.22658 -15.79383 -15.36861 -14.87553 -14.62747 -14.51769 -14.29303 -14.03810 -13.95402 -13.48298 -13.17081 -13.10453 -13.00045 -12.89490 -12.82307 -12.45528 -12.24243 -12.17495 -12.02536 -11.97855 -11.83974 -11.09287 -10.58565 -10.16342 -10.08993 -9.62729 -8.13371 -6.26586 -0.47536 -0.12433 0.22938 1.44896 1.47748 1.58372 2.13706 2.18741 2.44191 2.51668 2.88344 3.16742 3.40950 3.67777 3.80970 4.16169 4.26638 4.36382 4.41468 4.49236 4.56470 4.70369 4.82160 4.92089 4.93678 5.04848 5.08813 5.13327 5.16730 5.54986 5.60868 5.78433 6.05509 6.14549 6.22505 6.44398 6.83981 7.42605 8.92205 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.019249 B = 0.005492 C = 0.004630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.300519 B = 5096.886515 C = 6046.107436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.320 6.320 3 C 0.176 3.824 4 C -0.176 4.176 5 C 0.013 3.987 6 C -0.714 4.714 7 S 2.706 3.294 8 O -1.000 7.000 9 O -0.991 6.991 10 N -1.101 6.101 11 C 0.273 3.727 12 H 0.023 0.977 13 C -0.147 4.147 14 C -0.541 4.541 15 H 0.065 0.935 16 C 0.018 3.982 17 N -0.913 5.913 18 Si 0.962 3.038 19 H -0.268 1.268 20 H -0.278 1.278 21 H -0.283 1.283 22 C 0.010 3.990 23 C -0.229 4.229 24 H 0.064 0.936 25 H 0.128 0.872 26 H 0.069 0.931 27 H 0.163 0.837 28 H 0.160 0.840 29 H 0.417 0.583 30 H 0.038 0.962 31 H 0.035 0.965 32 H 0.069 0.931 33 H 0.265 0.735 34 H 0.133 0.867 35 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.949 -13.900 6.489 15.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.232 6.232 3 C 0.129 3.871 4 C -0.196 4.196 5 C -0.006 4.006 6 C -0.804 4.804 7 S 2.799 3.201 8 O -0.990 6.990 9 O -0.981 6.981 10 N -0.861 5.861 11 C 0.168 3.832 12 H 0.041 0.959 13 C -0.206 4.206 14 C -0.581 4.581 15 H 0.083 0.917 16 C -0.182 4.182 17 N -0.552 5.552 18 Si 0.787 3.213 19 H -0.192 1.192 20 H -0.203 1.203 21 H -0.209 1.209 22 C -0.009 4.009 23 C -0.248 4.248 24 H 0.083 0.917 25 H 0.146 0.854 26 H 0.088 0.912 27 H 0.181 0.819 28 H 0.178 0.822 29 H 0.252 0.748 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.088 0.912 33 H 0.075 0.925 34 H 0.151 0.849 35 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -0.991 -13.616 7.211 15.440 hybrid contribution -0.285 0.510 -1.147 1.287 sum -1.276 -13.106 6.064 14.497 Atomic orbital electron populations 1.23488 0.75876 1.06214 1.02663 1.86085 1.23990 1.25968 1.87200 1.19433 0.92872 0.84608 0.90157 1.20785 0.91764 0.99194 1.07807 1.20935 1.00728 0.90017 0.88939 1.30566 1.05399 1.20995 1.23397 1.00996 0.72518 0.74046 0.72532 1.93509 1.65679 1.62067 1.77782 1.93491 1.39701 1.87144 1.77801 1.55333 1.16010 1.84542 1.30222 1.18320 0.82504 0.93702 0.88676 0.95901 1.22111 1.01814 0.96365 1.00318 1.21637 1.00437 1.18381 1.17618 0.91710 1.25654 0.94805 0.98957 0.98819 1.69978 1.05381 1.42620 1.37217 0.85455 0.78371 0.78911 0.78547 1.19208 1.20323 1.20899 1.20826 0.92460 0.99016 0.88630 1.21550 1.01797 0.91471 1.10001 0.91728 0.85414 0.91209 0.81915 0.82233 0.74815 0.94328 0.94576 0.91226 0.92550 0.84882 0.82283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.15 9.81 113.37 1.11 1.26 16 2 O -0.32 -6.70 10.50 -92.42 -0.97 -7.67 16 3 C 0.18 4.38 6.69 22.50 0.15 4.53 16 4 C -0.18 -4.31 9.99 22.37 0.22 -4.08 16 5 C 0.01 0.36 9.52 22.26 0.21 0.58 16 6 C -0.71 -23.56 5.07 22.28 0.11 -23.44 16 7 S 2.71 103.69 5.72 -56.49 -0.32 103.36 16 8 O -1.00 -45.24 16.62 -128.00 -2.13 -47.37 16 9 O -0.99 -38.61 17.28 -128.00 -2.21 -40.82 16 10 N -1.10 -44.54 5.46 -172.52 -0.94 -45.48 16 11 C 0.27 13.15 2.89 44.25 0.13 13.28 16 12 H 0.02 1.23 7.50 -2.39 -0.02 1.21 16 13 C -0.15 -6.57 9.29 71.98 0.67 -5.90 16 14 C -0.54 -28.51 8.76 25.60 0.22 -28.29 16 15 H 0.06 3.33 7.81 -2.91 -0.02 3.30 16 16 C 0.02 0.94 5.30 84.65 0.45 1.39 16 17 N -0.91 -49.90 11.32 21.45 0.24 -49.65 16 18 Si 0.96 42.08 29.54 68.60 2.03 44.10 16 19 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 20 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 21 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 22 C 0.01 0.33 8.55 22.25 0.19 0.52 16 23 C -0.23 -5.99 9.04 22.36 0.20 -5.79 16 24 H 0.06 0.83 7.66 -2.39 -0.02 0.82 16 25 H 0.13 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.07 0.79 7.66 -2.39 -0.02 0.77 16 27 H 0.16 3.03 8.06 -2.91 -0.02 3.01 16 28 H 0.16 3.82 7.61 -2.91 -0.02 3.80 16 29 H 0.42 15.18 8.83 -96.74 -0.85 14.33 16 30 H 0.04 1.64 8.14 -2.39 -0.02 1.63 16 31 H 0.04 1.42 6.15 -2.39 -0.01 1.40 16 32 H 0.07 3.47 6.07 -2.39 -0.01 3.46 16 33 H 0.27 13.72 8.31 -92.71 -0.77 12.95 16 34 H 0.13 4.47 7.62 -2.91 -0.02 4.45 16 35 H 0.16 3.23 6.30 -2.91 -0.02 3.21 16 Total: -1.00 -67.22 308.53 -0.37 -67.58 By element: Atomic # 1 Polarization: 21.63 SS G_CDS: 0.26 Total: 21.90 kcal Atomic # 6 Polarization: -49.62 SS G_CDS: 3.67 Total: -45.95 kcal Atomic # 7 Polarization: -94.44 SS G_CDS: -0.70 Total: -95.14 kcal Atomic # 8 Polarization: -90.55 SS G_CDS: -5.31 Total: -95.86 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.10 kcal Atomic # 16 Polarization: 103.69 SS G_CDS: -0.32 Total: 103.36 kcal Total: -67.22 -0.37 -67.58 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050336946.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.537 kcal (2) G-P(sol) polarization free energy of solvation -67.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds