Wall clock time and date at job start Tue Mar 31 2020 05:39:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42902 * 113.99765 * 2 1 4 4 C 1.53001 * 109.47019 * 180.02562 * 3 2 1 5 5 S 1.81400 * 109.47021 * 179.97438 * 4 3 2 6 6 O 1.42097 * 110.54464 * 73.33239 * 5 4 3 7 7 O 1.42111 * 110.54335 * 296.58279 * 5 4 3 8 8 N 1.65603 * 104.45007 * 184.96181 * 5 4 3 9 9 C 1.38847 * 119.99780 * 299.01647 * 8 5 4 10 10 C 1.39570 * 119.84486 * 133.75692 * 9 8 5 11 11 C 1.36330 * 120.16284 * 180.25586 * 10 9 8 12 12 C 1.40885 * 119.83965 * 359.49801 * 11 10 9 13 13 C 1.41137 * 120.15820 * 180.25340 * 12 11 10 14 14 H 1.08008 * 119.99972 * 209.35963 * 13 12 11 15 15 C 1.39862 * 119.99964 * 29.36331 * 13 12 11 16 16 N 1.30900 * 120.00171 * 10.61668 * 15 13 12 17 17 Si 1.86802 * 119.99598 * 190.62258 * 15 13 12 18 18 H 1.48494 * 109.47225 * 59.99979 * 17 15 13 19 19 H 1.48502 * 109.46752 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.47208 * 299.99330 * 17 15 13 21 21 C 1.40892 * 119.68823 * 0.52031 * 12 11 10 22 22 C 1.36346 * 119.83059 * 359.73745 * 21 12 11 23 23 H 1.09000 * 109.47206 * 300.00082 * 1 2 3 24 24 H 1.08992 * 109.47514 * 60.00427 * 1 2 3 25 25 H 1.09005 * 109.46512 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47045 * 59.99943 * 3 2 1 27 27 H 1.09005 * 109.46907 * 299.99816 * 3 2 1 28 28 H 1.08997 * 109.47285 * 60.00058 * 4 3 2 29 29 H 1.08998 * 109.47315 * 299.99966 * 4 3 2 30 30 H 0.96996 * 119.99721 * 119.01759 * 8 5 4 31 31 H 1.08005 * 119.91346 * 359.97438 * 10 9 8 32 32 H 1.08001 * 120.08201 * 179.74744 * 11 10 9 33 33 H 0.96996 * 120.00232 * 180.02562 * 16 15 13 34 34 H 1.07996 * 120.08344 * 179.70532 * 21 12 11 35 35 H 1.08002 * 119.91128 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 16 4.2731 2.8419 -0.0014 6 8 4.1279 3.4530 1.2732 7 8 3.9314 3.5394 -1.1915 8 7 5.9007 2.5696 -0.1408 9 6 6.5692 1.8438 0.8360 10 6 7.4599 0.8355 0.4645 11 6 8.1158 0.1153 1.4182 12 6 7.9009 0.3981 2.7816 13 6 8.5805 -0.3398 3.7744 14 1 8.1254 -0.4893 4.7425 15 6 9.8433 -0.8772 3.5048 16 7 10.4850 -0.5278 2.4187 17 14 10.6139 -2.0938 4.6945 18 1 9.7366 -3.2851 4.8217 19 1 11.9440 -2.5114 4.1830 20 1 10.7736 -1.4523 6.0242 21 6 7.0001 1.4170 3.1493 22 6 6.3471 2.1256 2.1847 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5137 -0.8899 25 1 -0.3632 -1.0277 0.0005 26 1 1.6885 1.8464 0.8900 27 1 1.6885 1.8464 -0.8901 28 1 3.8567 0.6440 -0.8908 29 1 3.8574 0.6437 0.8891 30 1 6.3869 2.9172 -0.9047 31 1 7.6263 0.6223 -0.5812 32 1 8.8017 -0.6674 1.1293 33 1 11.3606 -0.9008 2.2315 34 1 6.8269 1.6359 4.1926 35 1 5.6559 2.9068 2.4652 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051606186.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:16 Heat of formation + Delta-G solvation = -120.193199 kcal Electronic energy + Delta-G solvation = -20169.058890 eV Core-core repulsion = 16872.236253 eV Total energy + Delta-G solvation = -3296.822637 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.087 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.84790 -38.99762 -38.21001 -37.12957 -36.48864 -34.53889 -32.97249 -31.43966 -30.49073 -27.47160 -26.55328 -24.49869 -23.11022 -22.60069 -20.34404 -19.32897 -18.72058 -18.46310 -17.76180 -17.35677 -17.07065 -16.76231 -16.25507 -15.87938 -15.76486 -15.28470 -14.61819 -14.52607 -14.17943 -13.82933 -13.68527 -13.29422 -13.22074 -13.10113 -13.03958 -12.79565 -12.74280 -12.59574 -12.44758 -12.17398 -12.07146 -11.72689 -11.56813 -11.11593 -10.77775 -10.68959 -9.49914 -8.96308 -8.59793 -6.31539 -0.85697 0.88243 1.13751 1.42220 1.52291 1.53773 1.67109 2.23385 2.48039 2.72557 2.99021 3.21054 3.55898 3.67784 3.75319 4.09706 4.36366 4.41869 4.46868 4.53761 4.57532 4.65100 4.74411 4.83032 5.06886 5.17416 5.25755 5.39171 5.67814 5.74520 6.04915 6.08680 6.12941 6.26130 6.41251 6.68093 6.93758 7.01750 8.35814 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.022491 B = 0.004227 C = 0.003843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.649104 B = 6622.463483 C = 7284.594691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.406 6.406 3 C 0.066 3.934 4 C -0.622 4.622 5 S 2.633 3.367 6 O -0.978 6.978 7 O -0.980 6.980 8 N -1.031 6.031 9 C 0.007 3.993 10 C -0.099 4.099 11 C -0.169 4.169 12 C 0.080 3.920 13 C -0.493 4.493 14 H 0.077 0.923 15 C 0.034 3.966 16 N -0.827 5.827 17 Si 0.983 3.017 18 H -0.260 1.260 19 H -0.269 1.269 20 H -0.262 1.262 21 C -0.221 4.221 22 C -0.121 4.121 23 H 0.054 0.946 24 H 0.059 0.941 25 H 0.102 0.898 26 H 0.073 0.927 27 H 0.082 0.918 28 H 0.155 0.845 29 H 0.138 0.862 30 H 0.424 0.576 31 H 0.123 0.877 32 H 0.109 0.891 33 H 0.288 0.712 34 H 0.102 0.898 35 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.039 0.064 -5.717 13.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.325 6.325 3 C -0.012 4.012 4 C -0.752 4.752 5 S 2.728 3.272 6 O -0.968 6.968 7 O -0.971 6.971 8 N -0.783 5.783 9 C -0.089 4.089 10 C -0.121 4.121 11 C -0.189 4.189 12 C 0.077 3.923 13 C -0.523 4.523 14 H 0.096 0.904 15 C -0.180 4.180 16 N -0.454 5.454 17 Si 0.804 3.196 18 H -0.184 1.184 19 H -0.193 1.193 20 H -0.187 1.187 21 C -0.241 4.241 22 C -0.142 4.142 23 H 0.073 0.927 24 H 0.078 0.922 25 H 0.120 0.880 26 H 0.091 0.909 27 H 0.101 0.899 28 H 0.173 0.827 29 H 0.156 0.844 30 H 0.262 0.738 31 H 0.141 0.859 32 H 0.127 0.873 33 H 0.099 0.901 34 H 0.120 0.880 35 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -12.268 0.697 -5.691 13.541 hybrid contribution 0.813 -0.802 0.215 1.162 sum -11.454 -0.105 -5.476 12.697 Atomic orbital electron populations 1.23091 0.78868 1.04490 1.01556 1.87918 1.22026 1.26887 1.95682 1.22226 0.89276 0.86849 1.02874 1.30597 1.05633 1.25112 1.13871 1.04413 0.72953 0.76665 0.73206 1.93526 1.85426 1.74162 1.43712 1.93546 1.83063 1.71633 1.48835 1.52296 1.25394 1.67917 1.32727 1.16787 1.05677 0.99625 0.86841 1.20728 0.97428 0.94908 0.99011 1.21007 1.02848 1.02280 0.92812 1.18064 0.90448 0.90240 0.93577 1.19821 1.02035 1.30145 1.00263 0.90445 1.26712 0.97111 0.96682 0.97517 1.69852 1.13329 1.36638 1.25545 0.85223 0.77586 0.78292 0.78452 1.18430 1.19320 1.18662 1.20894 1.04934 1.00192 0.98111 1.21246 1.00863 0.99984 0.92102 0.92723 0.92248 0.87985 0.90920 0.89950 0.82677 0.84373 0.73834 0.85929 0.87269 0.90109 0.87987 0.84899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 11.01 113.37 1.25 1.50 16 2 O -0.41 -9.83 10.70 -148.98 -1.59 -11.43 16 3 C 0.07 1.49 5.95 71.98 0.43 1.92 16 4 C -0.62 -15.57 6.29 71.98 0.45 -15.12 16 5 S 2.63 76.45 5.35 -56.49 -0.30 76.15 16 6 O -0.98 -34.59 15.14 -127.65 -1.93 -36.52 16 7 O -0.98 -30.51 18.08 -127.65 -2.31 -32.82 16 8 N -1.03 -32.24 5.63 -51.07 -0.29 -32.52 16 9 C 0.01 0.26 6.02 38.67 0.23 0.50 16 10 C -0.10 -4.14 9.90 22.15 0.22 -3.92 16 11 C -0.17 -8.31 8.59 22.47 0.19 -8.11 16 12 C 0.08 4.12 5.55 -21.27 -0.12 4.01 16 13 C -0.49 -25.62 9.04 23.38 0.21 -25.41 16 14 H 0.08 3.87 7.87 -2.91 -0.02 3.85 16 15 C 0.03 1.66 5.25 85.22 0.45 2.11 16 16 N -0.83 -41.56 10.86 21.81 0.24 -41.33 16 17 Si 0.98 36.98 29.57 68.60 2.03 39.01 16 18 H -0.26 -9.53 7.11 99.48 0.71 -8.82 16 19 H -0.27 -9.59 7.11 99.48 0.71 -8.88 16 20 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 21 C -0.22 -10.63 9.74 22.48 0.22 -10.42 16 22 C -0.12 -5.28 9.16 22.15 0.20 -5.07 16 23 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 24 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 25 H 0.10 1.31 8.14 -2.38 -0.02 1.29 16 26 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 28 H 0.16 3.36 8.14 -2.39 -0.02 3.34 16 29 H 0.14 3.79 8.14 -2.39 -0.02 3.77 16 30 H 0.42 11.25 8.91 -96.75 -0.86 10.39 16 31 H 0.12 4.34 8.06 -2.91 -0.02 4.31 16 32 H 0.11 5.60 6.25 -2.91 -0.02 5.59 16 33 H 0.29 13.15 8.30 -92.71 -0.77 12.38 16 34 H 0.10 4.69 8.06 -2.91 -0.02 4.66 16 35 H 0.13 5.59 5.60 -2.91 -0.02 5.58 16 Total: -1.00 -64.40 313.18 -0.17 -64.57 By element: Atomic # 1 Polarization: 32.67 SS G_CDS: 0.25 Total: 32.92 kcal Atomic # 6 Polarization: -61.77 SS G_CDS: 3.74 Total: -58.03 kcal Atomic # 7 Polarization: -73.80 SS G_CDS: -0.05 Total: -73.85 kcal Atomic # 8 Polarization: -74.93 SS G_CDS: -5.84 Total: -80.76 kcal Atomic # 14 Polarization: 36.98 SS G_CDS: 2.03 Total: 39.01 kcal Atomic # 16 Polarization: 76.45 SS G_CDS: -0.30 Total: 76.15 kcal Total: -64.40 -0.17 -64.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051606186.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.621 kcal (2) G-P(sol) polarization free energy of solvation -64.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds