Wall clock time and date at job start Tue Mar 31 2020 05:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42898 * 109.47246 * 2 1 4 4 C 1.35904 * 116.99848 * 180.02562 * 3 2 1 5 5 C 1.38726 * 120.05789 * 359.72776 * 4 3 2 6 6 C 1.38142 * 119.94596 * 179.74626 * 5 4 3 7 7 C 1.38266 * 120.05680 * 0.50799 * 6 5 4 8 8 S 1.76195 * 119.94865 * 179.74726 * 7 6 5 9 9 O 1.42106 * 106.40267 * 23.56093 * 8 7 6 10 10 O 1.42095 * 106.40309 * 156.47846 * 8 7 6 11 11 N 1.65598 * 107.21975 * 270.02224 * 8 7 6 12 12 C 1.46500 * 120.00178 * 89.99762 * 11 8 7 13 13 C 1.36933 * 119.99821 * 269.99827 * 11 8 7 14 14 H 1.08000 * 120.00452 * 23.09854 * 13 11 8 15 15 C 1.38817 * 119.99819 * 203.09176 * 13 11 8 16 16 N 1.31612 * 119.99752 * 11.89239 * 15 13 11 17 17 Si 1.86805 * 119.99783 * 191.88504 * 15 13 11 18 18 H 1.48504 * 109.46941 * 60.00614 * 17 15 13 19 19 H 1.48497 * 109.46809 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.46979 * 300.00370 * 17 15 13 21 21 C 1.38264 * 120.10739 * 359.76406 * 7 6 5 22 22 C 1.38143 * 120.05877 * 359.97438 * 21 7 6 23 23 H 1.08998 * 109.46846 * 299.99932 * 1 2 3 24 24 H 1.09006 * 109.46809 * 59.99705 * 1 2 3 25 25 H 1.08998 * 109.47146 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46846 * 240.00068 * 2 1 3 27 27 H 1.08999 * 109.47117 * 120.00469 * 2 1 3 28 28 H 1.08004 * 120.02867 * 359.97438 * 5 4 3 29 29 H 1.08007 * 119.97415 * 180.23475 * 6 5 4 30 30 H 1.08994 * 109.47189 * 95.05678 * 12 11 8 31 31 H 1.08999 * 109.47266 * 215.06215 * 12 11 8 32 32 H 1.09007 * 109.46970 * 335.05788 * 12 11 8 33 33 H 0.97007 * 119.99432 * 179.97438 * 16 15 13 34 34 H 1.08007 * 119.97328 * 179.97438 * 21 7 6 35 35 H 1.07999 * 120.03004 * 179.97438 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3537 1.5252 -0.0005 5 6 4.1998 0.4259 0.0046 6 6 5.5690 0.6095 -0.0012 7 6 6.0963 1.8876 -0.0016 8 16 7.8431 2.1185 -0.0024 9 8 8.4044 0.9322 -0.5473 10 8 8.0769 3.4100 -0.5467 11 7 8.3298 2.1823 1.5792 12 6 8.7113 0.9528 2.2784 13 6 8.3757 3.3844 2.2333 14 1 7.7711 4.2103 1.8887 15 6 9.1993 3.5415 3.3397 16 7 10.1037 2.6279 3.6218 17 14 9.0241 5.0497 4.4279 18 1 7.6516 5.0956 4.9931 19 1 10.0131 4.9800 5.5334 20 1 9.2687 6.2727 3.6218 21 6 5.2551 2.9850 -0.0011 22 6 3.8853 2.8067 -0.0007 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 3.7885 -0.5727 0.0095 29 1 6.2281 -0.2461 -0.0010 30 1 9.7922 0.8239 2.2233 31 1 8.4060 1.0190 3.3227 32 1 8.2194 0.1006 1.8095 33 1 10.6795 2.7379 4.3947 34 1 5.6694 3.9824 -0.0010 35 1 3.2286 3.6642 0.0001 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057539711.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:25 Heat of formation + Delta-G solvation = -74.806936 kcal Electronic energy + Delta-G solvation = -20563.129897 eV Core-core repulsion = 17268.275356 eV Total energy + Delta-G solvation = -3294.854540 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.087 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.15925 -37.49101 -36.24466 -35.39697 -34.81233 -32.23819 -31.09281 -30.88839 -29.59850 -26.22246 -24.28788 -23.40920 -22.69425 -21.75586 -18.64495 -18.39983 -17.53549 -16.60069 -16.35283 -16.26080 -15.96351 -14.63009 -14.51070 -14.29716 -13.76941 -13.57415 -13.45394 -13.20860 -13.01853 -12.74527 -12.41298 -12.21959 -11.90868 -11.78887 -11.21051 -11.13067 -11.12497 -11.00251 -10.85679 -10.82376 -10.58042 -10.33500 -10.22606 -9.96106 -9.04218 -8.94766 -8.44181 -7.86634 -6.07692 -3.80227 1.10271 1.43823 1.50956 2.98685 3.29207 3.33109 3.35470 3.62298 4.19475 4.50775 4.62259 4.63509 4.75661 4.82873 4.85988 4.96963 5.19004 5.20786 5.29017 5.45423 5.48004 5.60647 5.73356 5.79181 6.04785 6.11098 6.27917 6.31828 6.44264 6.77448 6.94552 7.23586 7.29637 7.55561 7.72442 8.52979 9.09114 9.45734 10.96252 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.021056 B = 0.005029 C = 0.004605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.494777 B = 5566.052272 C = 6079.150303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.051 3.949 3 O -0.315 6.315 4 C 0.168 3.832 5 C -0.234 4.234 6 C 0.016 3.984 7 C -0.700 4.700 8 S 2.678 3.322 9 O -0.986 6.986 10 O -0.966 6.966 11 N -0.854 5.854 12 C 0.137 3.863 13 C -0.317 4.317 14 H 0.096 0.904 15 C 0.040 3.960 16 N -0.888 5.888 17 Si 0.916 3.084 18 H -0.276 1.276 19 H -0.285 1.285 20 H -0.273 1.273 21 C 0.022 3.978 22 C -0.176 4.176 23 H 0.066 0.934 24 H 0.066 0.934 25 H 0.078 0.922 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.131 0.869 29 H 0.139 0.861 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.022 0.978 33 H 0.263 0.737 34 H 0.147 0.853 35 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.191 -5.609 -4.230 16.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.024 4.024 3 O -0.229 6.229 4 C 0.122 3.878 5 C -0.253 4.253 6 C -0.003 4.003 7 C -0.784 4.784 8 S 2.767 3.233 9 O -0.976 6.976 10 O -0.956 6.956 11 N -0.689 5.689 12 C -0.009 4.009 13 C -0.447 4.447 14 H 0.114 0.886 15 C -0.165 4.165 16 N -0.528 5.528 17 Si 0.743 3.257 18 H -0.202 1.202 19 H -0.211 1.211 20 H -0.198 1.198 21 C 0.003 3.997 22 C -0.195 4.195 23 H 0.085 0.915 24 H 0.085 0.915 25 H 0.097 0.903 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.149 0.851 29 H 0.157 0.843 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.040 0.960 33 H 0.074 0.926 34 H 0.165 0.835 35 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -14.734 -5.460 -4.842 16.442 hybrid contribution -0.740 0.323 1.068 1.339 sum -15.474 -5.136 -3.774 16.735 Atomic orbital electron populations 1.21776 0.92673 1.02859 1.03549 1.22834 0.95896 0.81948 1.01740 1.86075 1.19238 1.29542 1.88017 1.19187 0.81902 0.94469 0.92246 1.21270 0.94447 0.97991 1.11628 1.20717 0.94666 0.95862 0.89079 1.31609 1.29372 0.99096 1.18307 1.02095 0.74286 0.72955 0.73950 1.93474 1.76153 1.49785 1.78223 1.93475 1.84208 1.40210 1.77726 1.52627 1.76923 1.12074 1.27226 1.21105 1.00482 0.82397 0.96939 1.19048 1.24696 0.88767 1.12142 0.88649 1.25116 0.94640 0.97986 0.98709 1.70056 1.19570 1.34989 1.28170 0.86193 0.77842 0.81987 0.79701 1.20221 1.21085 1.19848 1.20787 0.91890 0.98556 0.88438 1.20518 0.95365 0.94788 1.08840 0.91457 0.91526 0.90333 0.91818 0.91728 0.85111 0.84289 0.91966 0.92011 0.95988 0.92637 0.83547 0.84683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 10.28 37.16 0.38 -0.66 16 2 C 0.05 0.46 5.46 37.16 0.20 0.67 16 3 O -0.32 -4.06 10.14 -19.44 -0.20 -4.25 16 4 C 0.17 2.47 6.69 -39.22 -0.26 2.21 16 5 C -0.23 -3.36 9.04 -39.44 -0.36 -3.71 16 6 C 0.02 0.27 9.51 -39.61 -0.38 -0.11 16 7 C -0.70 -13.27 5.97 -39.56 -0.24 -13.51 16 8 S 2.68 60.46 5.60 -107.50 -0.60 59.86 16 9 O -0.99 -23.15 16.25 -57.17 -0.93 -24.08 16 10 O -0.97 -23.94 16.37 -57.17 -0.94 -24.87 16 11 N -0.85 -21.19 3.31 -66.69 -0.22 -21.41 16 12 C 0.14 3.22 8.60 59.85 0.51 3.73 16 13 C -0.32 -8.40 9.17 -15.06 -0.14 -8.54 16 14 H 0.10 2.43 7.68 -52.49 -0.40 2.03 16 15 C 0.04 1.06 5.12 -17.43 -0.09 0.97 16 16 N -0.89 -24.32 10.65 55.49 0.59 -23.72 16 17 Si 0.92 20.64 29.57 -169.99 -5.03 15.62 16 18 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 19 H -0.29 -6.39 7.11 56.52 0.40 -5.98 16 20 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 21 C 0.02 0.39 9.51 -39.61 -0.38 0.01 16 22 C -0.18 -2.70 9.99 -39.43 -0.39 -3.09 16 23 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 25 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.06 0.52 7.67 -51.93 -0.40 0.12 16 27 H 0.06 0.55 7.65 -51.93 -0.40 0.15 16 28 H 0.13 1.45 6.30 -52.48 -0.33 1.12 16 29 H 0.14 2.14 7.61 -52.48 -0.40 1.74 16 30 H 0.06 1.56 7.35 -51.93 -0.38 1.18 16 31 H 0.06 1.47 7.31 -51.93 -0.38 1.09 16 32 H 0.02 0.44 7.61 -51.93 -0.40 0.04 16 33 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 34 H 0.15 2.45 7.61 -52.48 -0.40 2.05 16 35 H 0.14 1.75 8.06 -52.49 -0.42 1.32 16 LS Contribution 310.14 15.07 4.67 4.67 Total: -1.00 -32.10 310.14 -8.09 -40.18 By element: Atomic # 1 Polarization: 4.35 SS G_CDS: -4.31 Total: 0.04 kcal Atomic # 6 Polarization: -20.90 SS G_CDS: -1.13 Total: -22.03 kcal Atomic # 7 Polarization: -45.50 SS G_CDS: 0.37 Total: -45.13 kcal Atomic # 8 Polarization: -51.14 SS G_CDS: -2.06 Total: -53.21 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.03 Total: 15.62 kcal Atomic # 16 Polarization: 60.46 SS G_CDS: -0.60 Total: 59.86 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -32.10 -8.09 -40.18 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057539711.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.625 kcal (2) G-P(sol) polarization free energy of solvation -32.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds