Wall clock time and date at job start Tue Mar 31 2020 05:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30869 * 1 3 3 Si 1.86801 * 119.99824 * 2 1 4 4 H 1.48496 * 109.47549 * 269.99942 * 3 2 1 5 5 H 1.48500 * 109.47286 * 30.00089 * 3 2 1 6 6 H 1.48508 * 109.47012 * 149.99819 * 3 2 1 7 7 C 1.39913 * 120.00309 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99942 * 175.55446 * 7 2 1 9 9 C 1.41131 * 119.99915 * 355.56705 * 7 2 1 10 10 C 1.40887 * 120.16100 * 214.78059 * 9 7 2 11 11 C 1.36353 * 119.82984 * 180.02562 * 10 9 7 12 12 C 1.39510 * 120.17073 * 0.02562 * 11 10 9 13 13 N 1.39108 * 119.83852 * 180.02562 * 12 11 10 14 14 C 1.34775 * 120.00323 * 35.30089 * 13 12 11 15 15 O 1.21558 * 119.99934 * 355.71530 * 14 13 12 16 16 C 1.47880 * 120.00113 * 175.71313 * 14 13 12 17 17 C 1.40012 * 120.11840 * 179.97438 * 16 14 13 18 18 C 1.38399 * 117.96708 * 180.02562 * 17 16 14 19 19 C 1.39363 * 118.04142 * 0.02562 * 18 17 16 20 20 O 1.35516 * 120.02487 * 180.02562 * 19 18 17 21 21 N 1.32674 * 119.94644 * 0.02562 * 19 18 17 22 22 N 1.28357 * 122.20024 * 359.97438 * 21 19 18 23 23 C 1.39519 * 120.32364 * 0.26941 * 12 11 10 24 24 C 1.36356 * 120.16803 * 359.44605 * 23 12 11 25 25 H 0.96999 * 119.99891 * 359.97438 * 1 2 3 26 26 H 1.08000 * 120.07975 * 359.97438 * 10 9 7 27 27 H 1.08000 * 119.91188 * 179.97438 * 11 10 9 28 28 H 0.97011 * 120.00047 * 215.30237 * 13 12 11 29 29 H 1.08003 * 121.01248 * 0.04667 * 17 16 14 30 30 H 1.08002 * 120.98266 * 180.02562 * 18 17 16 31 31 H 0.96694 * 114.00639 * 269.97457 * 20 19 18 32 32 H 1.08005 * 119.91700 * 179.72968 * 23 12 11 33 33 H 1.08002 * 120.08389 * 180.24694 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2426 1.6178 0.0000 4 1 2.4902 2.0465 -1.4000 5 1 1.4401 2.6527 0.7000 6 1 3.5402 1.4402 0.7001 7 6 2.0083 -1.2116 0.0005 8 1 3.0859 -1.2130 -0.0720 9 6 1.3059 -2.4320 0.0956 10 6 1.8653 -3.5179 0.7975 11 6 1.1809 -4.6941 0.8847 12 6 -0.0698 -4.8240 0.2805 13 7 -0.7622 -6.0269 0.3741 14 6 -0.6811 -6.7654 1.4987 15 8 0.0574 -6.4203 2.4004 16 6 -1.4906 -7.9953 1.6355 17 6 -1.4079 -8.7646 2.8024 18 6 -2.1847 -9.9072 2.8830 19 6 -3.0007 -10.2225 1.7981 20 8 -3.7783 -11.3317 1.8343 21 7 -3.0157 -9.4357 0.7300 22 7 -2.2969 -8.3752 0.6514 23 6 -0.6274 -3.7550 -0.4216 24 6 0.0426 -2.5708 -0.5123 25 1 -0.4850 0.8400 0.0004 26 1 2.8340 -3.4192 1.2647 27 1 1.6087 -5.5275 1.4221 28 1 -1.3033 -6.3343 -0.3700 29 1 -0.7581 -8.4749 3.6150 30 1 -2.1591 -10.5361 3.7606 31 1 -3.3480 -12.1253 1.4879 32 1 -1.5942 -3.8642 -0.8905 33 1 -0.3921 -1.7429 -1.0527 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000061058805.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:40 Heat of formation + Delta-G solvation = 12.863210 kcal Electronic energy + Delta-G solvation = -20548.278567 eV Core-core repulsion = 17154.074490 eV Total energy + Delta-G solvation = -3394.204078 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.090 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.51759 -39.63733 -37.98602 -37.23699 -34.63164 -33.47124 -33.07535 -31.78180 -29.61990 -28.90060 -25.95716 -25.00939 -24.31352 -21.93172 -21.05561 -20.14509 -19.51638 -18.19390 -17.85273 -17.31995 -16.49489 -16.17794 -15.24266 -15.17612 -14.93887 -14.40670 -14.02274 -13.90894 -13.66554 -13.01053 -12.72850 -12.66626 -12.19620 -12.07140 -11.73648 -11.40976 -11.18894 -11.06826 -10.77284 -10.67340 -10.19000 -10.01017 -9.87904 -9.60528 -9.50916 -9.27276 -8.95708 -7.58743 -6.91998 -6.65741 -4.37976 0.09393 0.39795 2.35515 2.73840 2.97928 3.06205 3.08455 3.11531 3.18286 3.29405 3.60354 3.83986 3.95461 4.27721 4.41577 4.60007 4.66972 4.77203 5.30113 5.46392 5.60556 5.66542 6.18585 6.38025 6.67937 6.84991 6.86896 7.01971 7.14273 7.24436 7.59763 7.66830 7.75995 8.01628 8.14349 8.23881 8.27582 8.51603 8.62785 8.88480 8.94842 10.24949 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.052408 B = 0.002980 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.138965 B = 9392.742590 C = 9665.247401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.069 3.931 3 Si 0.916 3.084 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.458 4.458 8 H 0.077 0.923 9 C 0.103 3.897 10 C -0.207 4.207 11 C -0.082 4.082 12 C -0.006 4.006 13 N -0.620 5.620 14 C 0.554 3.446 15 O -0.520 6.520 16 C 0.028 3.972 17 C -0.050 4.050 18 C -0.141 4.141 19 C 0.265 3.735 20 O -0.473 6.473 21 N -0.256 5.256 22 N -0.186 5.186 23 C -0.113 4.113 24 C -0.142 4.142 25 H 0.279 0.721 26 H 0.097 0.903 27 H 0.108 0.892 28 H 0.408 0.592 29 H 0.169 0.831 30 H 0.162 0.838 31 H 0.408 0.592 32 H 0.094 0.906 33 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.018 -16.477 2.967 17.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C -0.147 4.147 3 Si 0.741 3.259 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.489 4.489 8 H 0.095 0.905 9 C 0.100 3.900 10 C -0.227 4.227 11 C -0.101 4.101 12 C -0.099 4.099 13 N -0.261 5.261 14 C 0.338 3.662 15 O -0.396 6.396 16 C -0.119 4.119 17 C -0.079 4.079 18 C -0.170 4.170 19 C 0.081 3.919 20 O -0.279 6.279 21 N -0.109 5.109 22 N -0.035 5.035 23 C -0.133 4.133 24 C -0.162 4.162 25 H 0.090 0.910 26 H 0.116 0.884 27 H 0.126 0.874 28 H 0.243 0.757 29 H 0.186 0.814 30 H 0.180 0.820 31 H 0.267 0.733 32 H 0.112 0.888 33 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -4.747 -15.468 2.398 16.357 hybrid contribution 0.687 -0.135 1.032 1.247 sum -4.060 -15.603 3.430 16.484 Atomic orbital electron populations 1.69758 1.07317 1.28863 1.37576 1.25908 0.94961 1.01263 0.92519 0.86178 0.80232 0.80380 0.79092 1.19472 1.20272 1.18691 1.19527 0.94811 0.90205 1.44309 0.90486 1.17756 0.92240 0.92002 0.87986 1.20798 1.01305 0.94873 1.05693 1.20388 0.92653 0.97837 0.99266 1.17267 0.94476 0.85640 1.12472 1.42816 1.47118 1.20577 1.15599 1.17423 0.82876 0.82595 0.83341 1.90808 1.38671 1.69834 1.40249 1.23152 0.97754 0.97790 0.93227 1.22459 0.96010 0.91383 0.98000 1.22560 0.95061 0.98722 1.00690 1.21030 0.89269 0.90486 0.91138 1.84741 1.40989 1.17256 1.84921 1.73071 1.15073 1.00791 1.22005 1.73300 1.00781 1.06062 1.23404 1.20346 0.98437 0.92950 1.01613 1.21205 0.97287 0.95567 1.02134 0.91024 0.88446 0.87415 0.75685 0.81380 0.82017 0.73325 0.88761 0.84905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.80 10.60 55.55 0.59 -20.21 16 2 C 0.07 1.72 5.42 -17.33 -0.09 1.63 16 3 Si 0.92 18.76 29.56 -169.99 -5.03 13.74 16 4 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 5 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 6 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 7 C -0.46 -12.03 9.02 -37.86 -0.34 -12.37 16 8 H 0.08 1.94 7.85 -52.49 -0.41 1.53 16 9 C 0.10 2.72 5.55 -106.80 -0.59 2.12 16 10 C -0.21 -5.13 9.74 -39.26 -0.38 -5.51 16 11 C -0.08 -1.91 8.61 -39.79 -0.34 -2.26 16 12 C -0.01 -0.14 6.30 -83.61 -0.53 -0.67 16 13 N -0.62 -11.40 5.29 -10.59 -0.06 -11.46 16 14 C 0.55 9.83 7.64 -12.31 -0.09 9.74 16 15 O -0.52 -10.60 13.80 5.31 0.07 -10.53 16 16 C 0.03 0.40 6.83 -82.85 -0.57 -0.17 16 17 C -0.05 -0.54 9.72 -38.86 -0.38 -0.91 16 18 C -0.14 -1.18 10.14 -39.10 -0.40 -1.58 16 19 C 0.27 2.68 7.85 -16.77 -0.13 2.55 16 20 O -0.47 -3.59 13.56 -18.24 -0.25 -3.83 16 21 N -0.26 -3.39 11.54 30.55 0.35 -3.03 16 22 N -0.19 -2.67 10.74 33.31 0.36 -2.31 16 23 C -0.11 -2.59 9.90 -39.78 -0.39 -2.98 16 24 C -0.14 -3.61 8.61 -39.26 -0.34 -3.95 16 25 H 0.28 6.57 8.30 -40.82 -0.34 6.23 16 26 H 0.10 2.28 8.06 -52.49 -0.42 1.86 16 27 H 0.11 2.45 6.22 -52.49 -0.33 2.12 16 28 H 0.41 6.51 8.17 -40.82 -0.33 6.18 16 29 H 0.17 1.60 7.71 -52.48 -0.40 1.20 16 30 H 0.16 0.77 8.06 -52.49 -0.42 0.35 16 31 H 0.41 0.85 9.06 45.56 0.41 1.26 16 32 H 0.09 1.90 8.06 -52.48 -0.42 1.48 16 33 H 0.13 3.49 6.14 -52.49 -0.32 3.17 16 LS Contribution 299.36 15.07 4.51 4.51 Total: -1.00 -31.45 299.36 -5.81 -37.26 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: -1.79 Total: 10.23 kcal Atomic # 6 Polarization: -9.79 SS G_CDS: -4.58 Total: -14.36 kcal Atomic # 7 Polarization: -38.26 SS G_CDS: 1.24 Total: -37.01 kcal Atomic # 8 Polarization: -14.18 SS G_CDS: -0.17 Total: -14.36 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -5.03 Total: 13.74 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -31.45 -5.81 -37.26 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061058805.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.125 kcal (2) G-P(sol) polarization free energy of solvation -31.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds