Wall clock time and date at job start Tue Mar 31 2020 05:45:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30869 * 1 3 3 Si 1.86801 * 119.99824 * 2 1 4 4 H 1.48496 * 109.47549 * 269.99942 * 3 2 1 5 5 H 1.48500 * 109.47286 * 30.00089 * 3 2 1 6 6 H 1.48508 * 109.47012 * 149.99819 * 3 2 1 7 7 C 1.39913 * 120.00309 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99942 * 175.55446 * 7 2 1 9 9 C 1.41131 * 119.99915 * 355.56705 * 7 2 1 10 10 C 1.40887 * 120.16100 * 214.78059 * 9 7 2 11 11 C 1.36353 * 119.82984 * 180.02562 * 10 9 7 12 12 C 1.39510 * 120.17073 * 0.02562 * 11 10 9 13 13 N 1.39108 * 119.83852 * 180.02562 * 12 11 10 14 14 C 1.34775 * 120.00323 * 35.30089 * 13 12 11 15 15 O 1.21558 * 119.99934 * 355.71530 * 14 13 12 16 16 C 1.47880 * 120.00113 * 175.71313 * 14 13 12 17 17 C 1.40012 * 120.11840 * 179.97438 * 16 14 13 18 18 C 1.38399 * 117.96708 * 180.02562 * 17 16 14 19 19 C 1.39363 * 118.04142 * 0.02562 * 18 17 16 20 20 O 1.35516 * 120.02487 * 180.02562 * 19 18 17 21 21 N 1.32674 * 119.94644 * 0.02562 * 19 18 17 22 22 N 1.28357 * 122.20024 * 359.97438 * 21 19 18 23 23 C 1.39519 * 120.32364 * 0.26941 * 12 11 10 24 24 C 1.36356 * 120.16803 * 359.44605 * 23 12 11 25 25 H 0.96999 * 119.99891 * 359.97438 * 1 2 3 26 26 H 1.08000 * 120.07975 * 359.97438 * 10 9 7 27 27 H 1.08000 * 119.91188 * 179.97438 * 11 10 9 28 28 H 0.97011 * 120.00047 * 215.30237 * 13 12 11 29 29 H 1.08003 * 121.01248 * 0.04667 * 17 16 14 30 30 H 1.08002 * 120.98266 * 180.02562 * 18 17 16 31 31 H 0.96694 * 114.00639 * 269.97457 * 20 19 18 32 32 H 1.08005 * 119.91700 * 179.72968 * 23 12 11 33 33 H 1.08002 * 120.08389 * 180.24694 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2426 1.6178 0.0000 4 1 2.4902 2.0465 -1.4000 5 1 1.4401 2.6527 0.7000 6 1 3.5402 1.4402 0.7001 7 6 2.0083 -1.2116 0.0005 8 1 3.0859 -1.2130 -0.0720 9 6 1.3059 -2.4320 0.0956 10 6 1.8653 -3.5179 0.7975 11 6 1.1809 -4.6941 0.8847 12 6 -0.0698 -4.8240 0.2805 13 7 -0.7622 -6.0269 0.3741 14 6 -0.6811 -6.7654 1.4987 15 8 0.0574 -6.4203 2.4004 16 6 -1.4906 -7.9953 1.6355 17 6 -1.4079 -8.7646 2.8024 18 6 -2.1847 -9.9072 2.8830 19 6 -3.0007 -10.2225 1.7981 20 8 -3.7783 -11.3317 1.8343 21 7 -3.0157 -9.4357 0.7300 22 7 -2.2969 -8.3752 0.6514 23 6 -0.6274 -3.7550 -0.4216 24 6 0.0426 -2.5708 -0.5123 25 1 -0.4850 0.8400 0.0004 26 1 2.8340 -3.4192 1.2647 27 1 1.6087 -5.5275 1.4221 28 1 -1.3033 -6.3343 -0.3700 29 1 -0.7581 -8.4749 3.6150 30 1 -2.1591 -10.5361 3.7606 31 1 -3.3480 -12.1253 1.4879 32 1 -1.5942 -3.8642 -0.8905 33 1 -0.3921 -1.7429 -1.0527 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000061058805.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:39 Heat of formation + Delta-G solvation = -12.020518 kcal Electronic energy + Delta-G solvation = -20549.357607 eV Core-core repulsion = 17154.074490 eV Total energy + Delta-G solvation = -3395.283117 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.090 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.47580 -41.08751 -39.16694 -38.55832 -36.30171 -34.81721 -34.35875 -32.82223 -31.49551 -30.69042 -27.39217 -26.15832 -25.46219 -23.55079 -22.80025 -21.73358 -20.23242 -19.52510 -19.16962 -18.91179 -17.75355 -17.27964 -16.98862 -16.44521 -16.23288 -15.70916 -15.40994 -15.07667 -14.78518 -14.57874 -14.40645 -14.01330 -13.62094 -13.41619 -13.25804 -13.01877 -12.87662 -12.78376 -12.49094 -11.84238 -11.49369 -11.42077 -11.28243 -11.01853 -10.93724 -10.72069 -10.70052 -9.48883 -8.77752 -8.51319 -6.34099 -0.82636 -0.41540 0.76503 1.13349 1.40876 1.41036 1.53475 1.59668 1.94950 2.22840 2.24593 2.43830 2.80067 2.85161 3.41980 3.63183 3.68312 3.72668 3.88183 4.37634 4.44940 4.52991 4.73423 4.90038 4.91240 5.08863 5.12716 5.30571 5.39215 5.68369 5.86073 5.95859 6.10731 6.35893 6.44464 6.52070 6.66613 6.94317 6.95616 7.13068 7.31507 8.41267 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.052408 B = 0.002980 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.138965 B = 9392.742590 C = 9665.247401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.027 3.973 3 Si 0.989 3.011 4 H -0.260 1.260 5 H -0.270 1.270 6 H -0.261 1.261 7 C -0.494 4.494 8 H 0.076 0.924 9 C 0.071 3.929 10 C -0.219 4.219 11 C -0.090 4.090 12 C 0.009 3.991 13 N -0.622 5.622 14 C 0.561 3.439 15 O -0.549 6.549 16 C 0.008 3.992 17 C -0.049 4.049 18 C -0.114 4.114 19 C 0.278 3.722 20 O -0.474 6.474 21 N -0.287 5.287 22 N -0.202 5.202 23 C -0.115 4.115 24 C -0.160 4.160 25 H 0.285 0.715 26 H 0.102 0.898 27 H 0.114 0.886 28 H 0.420 0.580 29 H 0.181 0.819 30 H 0.208 0.792 31 H 0.433 0.567 32 H 0.121 0.879 33 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.833 -18.489 4.022 19.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C -0.185 4.185 3 Si 0.810 3.190 4 H -0.185 1.185 5 H -0.195 1.195 6 H -0.185 1.185 7 C -0.525 4.525 8 H 0.094 0.906 9 C 0.069 3.931 10 C -0.239 4.239 11 C -0.110 4.110 12 C -0.084 4.084 13 N -0.265 5.265 14 C 0.346 3.654 15 O -0.426 6.426 16 C -0.139 4.139 17 C -0.077 4.077 18 C -0.143 4.143 19 C 0.093 3.907 20 O -0.284 6.284 21 N -0.141 5.141 22 N -0.051 5.051 23 C -0.135 4.135 24 C -0.180 4.180 25 H 0.096 0.904 26 H 0.120 0.880 27 H 0.132 0.868 28 H 0.258 0.742 29 H 0.198 0.802 30 H 0.225 0.775 31 H 0.297 0.703 32 H 0.139 0.861 33 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -5.579 -17.551 3.433 18.733 hybrid contribution 0.781 0.134 0.765 1.101 sum -4.798 -17.417 4.198 18.547 Atomic orbital electron populations 1.69828 1.08649 1.30062 1.38154 1.26773 0.95796 1.04412 0.91536 0.85087 0.78709 0.75720 0.79459 1.18468 1.19492 1.18505 1.19755 0.94982 0.91224 1.46490 0.90613 1.18067 0.93163 0.92801 0.89095 1.20943 1.01762 0.95242 1.05905 1.20522 0.93220 0.97620 0.99635 1.17321 0.93957 0.86756 1.10373 1.42752 1.47329 1.19621 1.16813 1.17876 0.82155 0.83088 0.82268 1.90783 1.39907 1.70867 1.41030 1.22661 0.98761 0.97318 0.95188 1.22645 0.96531 0.91605 0.96968 1.22943 0.92599 0.97569 1.01219 1.21213 0.88391 0.90499 0.90570 1.84706 1.41043 1.17587 1.85039 1.72983 1.15859 1.01229 1.23990 1.73214 1.01147 1.06895 1.23856 1.20558 0.99240 0.92218 1.01465 1.21170 0.97629 0.96272 1.02901 0.90417 0.88008 0.86764 0.74241 0.80166 0.77457 0.70264 0.86146 0.86266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -44.33 10.60 21.82 0.23 -44.10 16 2 C 0.03 1.38 5.42 85.24 0.46 1.84 16 3 Si 0.99 38.91 29.56 68.60 2.03 40.94 16 4 H -0.26 -9.75 7.11 99.48 0.71 -9.05 16 5 H -0.27 -10.20 7.11 99.48 0.71 -9.50 16 6 H -0.26 -10.08 7.11 99.48 0.71 -9.38 16 7 C -0.49 -26.93 9.02 23.39 0.21 -26.72 16 8 H 0.08 3.97 7.85 -2.91 -0.02 3.94 16 9 C 0.07 3.91 5.55 -21.27 -0.12 3.79 16 10 C -0.22 -11.21 9.74 22.48 0.22 -10.99 16 11 C -0.09 -4.30 8.61 22.14 0.19 -4.10 16 12 C 0.01 0.41 6.30 38.60 0.24 0.65 16 13 N -0.62 -22.66 5.29 -305.68 -1.62 -24.27 16 14 C 0.56 19.56 7.64 86.80 0.66 20.23 16 15 O -0.55 -22.17 13.80 -3.90 -0.05 -22.23 16 16 C 0.01 0.22 6.83 41.99 0.29 0.51 16 17 C -0.05 -0.93 9.72 22.74 0.22 -0.70 16 18 C -0.11 -1.41 10.14 22.58 0.23 -1.19 16 19 C 0.28 4.63 7.85 84.84 0.67 5.30 16 20 O -0.47 -5.24 13.56 -88.18 -1.20 -6.44 16 21 N -0.29 -7.00 11.54 -170.01 -1.96 -8.96 16 22 N -0.20 -5.54 10.74 -48.51 -0.52 -6.06 16 23 C -0.11 -5.30 9.90 22.14 0.22 -5.08 16 24 C -0.16 -8.41 8.61 22.48 0.19 -8.22 16 25 H 0.29 13.69 8.30 -92.71 -0.77 12.92 16 26 H 0.10 4.96 8.06 -2.91 -0.02 4.93 16 27 H 0.11 5.25 6.22 -2.91 -0.02 5.23 16 28 H 0.42 13.18 8.17 -92.70 -0.76 12.43 16 29 H 0.18 2.93 7.71 -2.91 -0.02 2.91 16 30 H 0.21 0.67 8.06 -2.91 -0.02 0.65 16 31 H 0.43 -0.06 9.06 -74.06 -0.67 -0.73 16 32 H 0.12 4.81 8.06 -2.91 -0.02 4.79 16 33 H 0.12 6.54 6.14 -2.91 -0.02 6.52 16 Total: -1.00 -70.50 299.36 0.37 -70.13 By element: Atomic # 1 Polarization: 25.90 SS G_CDS: -0.23 Total: 25.68 kcal Atomic # 6 Polarization: -28.38 SS G_CDS: 3.69 Total: -24.69 kcal Atomic # 7 Polarization: -79.53 SS G_CDS: -3.87 Total: -83.39 kcal Atomic # 8 Polarization: -27.41 SS G_CDS: -1.25 Total: -28.66 kcal Atomic # 14 Polarization: 38.91 SS G_CDS: 2.03 Total: 40.94 kcal Total: -70.50 0.37 -70.13 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061058805.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.112 kcal (2) G-P(sol) polarization free energy of solvation -70.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds