Wall clock time and date at job start Tue Mar 31 2020 05:38:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42905 * 113.99745 * 2 1 4 4 C 1.50697 * 109.46703 * 179.97438 * 3 2 1 5 5 N 1.28625 * 124.70581 * 90.00492 * 4 3 2 6 6 C 1.33608 * 115.77003 * 179.97438 * 5 4 3 7 7 C 1.47113 * 123.15468 * 179.97438 * 6 5 4 8 8 O 1.21552 * 119.99450 * 180.02562 * 7 6 5 9 9 O 1.34796 * 119.99946 * 0.03095 * 7 6 5 10 10 C 1.45206 * 116.99752 * 179.97438 * 9 7 6 11 11 C 1.52999 * 109.46777 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.46997 * 180.02562 * 11 10 9 13 13 C 1.50699 * 109.47240 * 180.02562 * 12 11 10 14 14 H 1.08003 * 119.99962 * 0.02562 * 13 12 11 15 15 C 1.37873 * 119.99861 * 179.97438 * 13 12 11 16 16 N 1.31522 * 120.00243 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99980 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46921 * 60.00420 * 17 15 13 19 19 H 1.48506 * 109.46938 * 180.02562 * 17 15 13 20 20 H 1.48490 * 109.47056 * 300.00305 * 17 15 13 21 21 C 1.35287 * 113.68439 * 0.27170 * 6 5 4 22 22 S 1.70760 * 124.71270 * 269.97546 * 4 3 2 23 23 H 1.08995 * 109.47131 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.47368 * 299.99865 * 1 2 3 25 25 H 1.09008 * 109.46884 * 59.99920 * 1 2 3 26 26 H 1.09001 * 109.46711 * 59.99722 * 3 2 1 27 27 H 1.08994 * 109.47104 * 299.99965 * 3 2 1 28 28 H 1.09000 * 109.47070 * 299.99996 * 10 9 7 29 29 H 1.09001 * 109.46626 * 60.00014 * 10 9 7 30 30 H 1.09000 * 109.47486 * 299.99948 * 11 10 9 31 31 H 1.09001 * 109.47362 * 60.00671 * 11 10 9 32 32 H 1.09000 * 109.46866 * 300.00212 * 12 11 10 33 33 H 1.08996 * 109.47261 * 59.99820 * 12 11 10 34 34 H 0.96992 * 120.00032 * 179.97438 * 16 15 13 35 35 H 1.08004 * 125.58355 * 179.73257 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 7 4.2430 1.1285 -1.0565 6 6 5.5587 1.0248 -0.8484 7 6 6.5421 0.9464 -1.9397 8 8 7.7268 0.8526 -1.6845 9 8 6.1294 0.9786 -3.2225 10 6 7.1550 0.8974 -4.2472 11 6 6.5003 0.9481 -5.6291 12 6 7.5810 0.8619 -6.7088 13 6 6.9362 0.9124 -8.0700 14 1 5.8631 0.9979 -8.1563 15 6 7.7164 0.8505 -9.2050 16 7 9.0233 0.7469 -9.0999 17 14 6.9172 0.9124 -10.8923 18 1 6.1701 2.1873 -11.0396 19 1 7.9662 0.8289 -11.9402 20 1 5.9802 -0.2302 -11.0383 21 6 5.9010 0.9924 0.4600 22 16 4.4813 1.1105 1.4047 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8901 26 1 1.6885 1.8464 0.8900 27 1 1.6886 1.8464 -0.8899 28 1 7.8431 1.7359 -4.1397 29 1 7.7031 -0.0386 -4.1392 30 1 5.8124 0.1094 -5.7363 31 1 5.9520 1.8839 -5.7373 32 1 8.2692 1.7003 -6.6018 33 1 8.1290 -0.0740 -6.6005 34 1 9.5722 0.7030 -9.8984 35 1 6.9068 0.9080 0.8446 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065646543.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:41 Heat of formation + Delta-G solvation = -96.035367 kcal Electronic energy + Delta-G solvation = -18976.225336 eV Core-core repulsion = 15680.450261 eV Total energy + Delta-G solvation = -3295.775074 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.087 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.77968 -39.41738 -38.12492 -36.42199 -33.93803 -32.06892 -31.61014 -28.58811 -27.47162 -26.45421 -25.47367 -23.12648 -21.79280 -20.36932 -20.06662 -19.07796 -17.05942 -16.93333 -16.55942 -16.33330 -16.26674 -16.10269 -15.67497 -14.73155 -14.44557 -14.35334 -13.73981 -13.39272 -13.02728 -12.66563 -12.36163 -12.11661 -12.11060 -11.88301 -11.84235 -10.92332 -10.78366 -10.59143 -10.51520 -10.34810 -10.26911 -10.12081 -10.03134 -9.67681 -9.47951 -9.36514 -9.14118 -8.35058 -6.00157 -4.02987 0.06327 0.79297 1.16518 1.52920 2.84594 2.99048 3.30885 3.35302 3.39100 3.42249 3.89137 4.40653 4.46946 4.69764 4.79234 4.88316 4.91986 4.96937 5.04622 5.29520 5.35665 5.48583 5.62000 5.64966 6.05448 6.45950 6.57775 6.59925 6.82794 7.03024 7.11394 7.64086 7.75590 7.89243 7.98483 8.39922 9.03085 9.61017 11.11358 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.021205 B = 0.002878 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.145021 B = 9725.238109 C =10932.487163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.383 6.383 3 C 0.141 3.859 4 C 0.014 3.986 5 N -0.400 5.400 6 C 0.032 3.968 7 C 0.540 3.460 8 O -0.503 6.503 9 O -0.333 6.333 10 C 0.066 3.934 11 C -0.108 4.108 12 C 0.025 3.975 13 C -0.521 4.521 14 H 0.057 0.943 15 C 0.057 3.943 16 N -0.896 5.896 17 Si 0.896 3.104 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.276 1.276 21 C -0.218 4.218 22 S 0.242 5.758 23 H 0.091 0.909 24 H 0.044 0.956 25 H 0.048 0.952 26 H 0.076 0.924 27 H 0.087 0.913 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.019 0.981 33 H 0.020 0.980 34 H 0.262 0.738 35 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.772 1.585 25.659 29.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C 0.061 3.939 4 C -0.266 4.266 5 N -0.116 5.116 6 C -0.103 4.103 7 C 0.381 3.619 8 O -0.392 6.392 9 O -0.248 6.248 10 C -0.006 4.006 11 C -0.146 4.146 12 C -0.012 4.012 13 C -0.559 4.559 14 H 0.076 0.924 15 C -0.145 4.145 16 N -0.535 5.535 17 Si 0.723 3.277 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.202 1.202 21 C -0.360 4.360 22 S 0.500 5.500 23 H 0.109 0.891 24 H 0.063 0.937 25 H 0.066 0.934 26 H 0.094 0.906 27 H 0.105 0.895 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.038 0.962 33 H 0.038 0.962 34 H 0.071 0.929 35 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -14.613 1.413 26.095 29.941 hybrid contribution 0.376 0.137 -1.784 1.828 sum -14.237 1.550 24.311 28.215 Atomic orbital electron populations 1.22818 0.79797 1.03444 1.00412 1.87965 1.20456 1.26167 1.95540 1.20785 0.84031 0.86240 1.02827 1.26694 1.01034 1.07089 0.91781 1.66959 1.02843 1.11064 1.30772 1.19447 0.89532 1.09757 0.91532 1.19748 0.85907 0.73262 0.82938 1.90877 1.17147 1.46151 1.85026 1.86688 1.41741 1.82046 1.14367 1.23608 0.89085 1.02190 0.85763 1.21766 1.00694 1.02140 0.90003 1.19049 0.92992 0.97645 0.91551 1.21149 0.93469 1.50611 0.90719 0.92444 1.25028 0.94834 0.95217 0.99387 1.69958 1.03939 1.50292 1.29283 0.86599 0.78913 0.78680 0.83479 1.20175 1.21279 1.20168 1.26765 1.06800 1.05832 0.96616 1.82775 0.94031 1.62441 1.10780 0.89052 0.93712 0.93368 0.90629 0.89534 0.91306 0.91307 0.92030 0.92055 0.96223 0.96205 0.92857 0.78688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.38 -3.61 10.69 -35.23 -0.38 -3.99 16 3 C 0.14 1.12 6.51 36.00 0.23 1.36 16 4 C 0.01 0.15 6.97 -13.62 -0.09 0.05 16 5 N -0.40 -5.77 10.60 -8.53 -0.09 -5.87 16 6 C 0.03 0.46 6.71 -84.55 -0.57 -0.11 16 7 C 0.54 9.50 7.94 34.33 0.27 9.78 16 8 O -0.50 -9.46 16.50 -19.31 -0.32 -9.77 16 9 O -0.33 -6.40 10.16 -40.75 -0.41 -6.82 16 10 C 0.07 1.31 5.48 37.16 0.20 1.52 16 11 C -0.11 -2.38 5.53 -26.73 -0.15 -2.53 16 12 C 0.02 0.65 4.97 -27.88 -0.14 0.52 16 13 C -0.52 -15.05 9.11 -34.44 -0.31 -15.36 16 14 H 0.06 1.60 7.74 -52.48 -0.41 1.20 16 15 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 16 N -0.90 -27.29 13.29 55.43 0.74 -26.55 16 17 Si 0.90 21.95 29.54 -169.99 -5.02 16.93 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 C -0.22 -2.33 10.62 29.68 0.32 -2.02 16 22 S 0.24 1.86 22.92 -107.50 -2.46 -0.60 16 23 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.04 0.17 8.14 -51.93 -0.42 -0.26 16 25 H 0.05 0.25 8.14 -51.92 -0.42 -0.18 16 26 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 29 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 30 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 31 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 32 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 35 H 0.20 1.73 8.03 -52.48 -0.42 1.30 16 LS Contribution 328.94 15.07 4.96 4.96 Total: -1.00 -34.53 328.94 -6.82 -41.35 By element: Atomic # 1 Polarization: -1.08 SS G_CDS: -4.61 Total: -5.69 kcal Atomic # 6 Polarization: -4.73 SS G_CDS: 0.78 Total: -3.95 kcal Atomic # 7 Polarization: -33.07 SS G_CDS: 0.65 Total: -32.42 kcal Atomic # 8 Polarization: -19.47 SS G_CDS: -1.11 Total: -20.58 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Atomic # 16 Polarization: 1.86 SS G_CDS: -2.46 Total: -0.60 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -34.53 -6.82 -41.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065646543.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.683 kcal (2) G-P(sol) polarization free energy of solvation -34.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds