Wall clock time and date at job start Tue Mar 31 2020 05:36:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 S 1.81397 * 109.47318 * 2 1 4 4 O 1.42096 * 110.54546 * 68.37683 * 3 2 1 5 5 O 1.42099 * 110.54582 * 291.62366 * 3 2 1 6 6 N 1.65602 * 104.45139 * 179.97438 * 3 2 1 7 7 C 1.46505 * 119.99755 * 65.00191 * 6 3 2 8 8 C 1.50699 * 109.46837 * 165.00307 * 7 6 3 9 9 C 1.38305 * 119.93408 * 89.99748 * 8 7 6 10 10 C 1.38101 * 120.07071 * 179.97438 * 9 8 7 11 11 C 1.38876 * 119.92956 * 0.02562 * 10 9 8 12 12 O 1.35750 * 120.06861 * 180.02562 * 11 10 9 13 13 C 1.34828 * 117.00075 * 5.53840 * 12 11 10 14 14 H 1.08003 * 120.00029 * 354.94359 * 13 12 11 15 15 C 1.38659 * 120.00122 * 174.94542 * 13 12 11 16 16 N 1.31558 * 119.99705 * 180.02562 * 15 13 12 17 17 Si 1.86795 * 120.00035 * 359.97438 * 15 13 12 18 18 H 1.48498 * 109.47181 * 89.99980 * 17 15 13 19 19 H 1.48498 * 109.47260 * 210.00361 * 17 15 13 20 20 H 1.48502 * 109.47130 * 330.00179 * 17 15 13 21 21 C 1.38880 * 119.86555 * 0.27954 * 11 10 9 22 22 C 1.38102 * 119.92551 * 359.44514 * 21 11 10 23 23 H 1.09000 * 109.47195 * 300.00306 * 1 2 3 24 24 H 1.09009 * 109.47114 * 60.00076 * 1 2 3 25 25 H 1.08998 * 109.47282 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47377 * 240.00217 * 2 1 3 27 27 H 1.08998 * 109.47569 * 120.00060 * 2 1 3 28 28 H 0.96998 * 120.00343 * 245.00345 * 6 3 2 29 29 H 1.08986 * 109.47314 * 44.99897 * 7 6 3 30 30 H 1.09005 * 109.46923 * 284.99642 * 7 6 3 31 31 H 1.07999 * 119.96326 * 0.02562 * 9 8 7 32 32 H 1.07997 * 120.03156 * 180.02562 * 10 9 8 33 33 H 0.96997 * 119.99350 * 179.97438 * 16 15 13 34 34 H 1.07996 * 120.04097 * 179.72435 * 21 11 10 35 35 H 1.07997 * 119.96688 * 180.27743 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 8 1.8386 2.3438 1.2369 5 8 1.8386 2.3439 -1.2370 6 7 3.7843 1.5653 0.0007 7 6 4.4675 0.9668 -1.1488 8 6 5.9401 1.2785 -1.0760 9 6 6.7957 0.4179 -0.4126 10 6 8.1458 0.7005 -0.3445 11 6 8.6440 1.8505 -0.9427 12 8 9.9707 2.1308 -0.8780 13 6 10.7670 1.1973 -0.3192 14 1 10.3334 0.3136 0.1254 15 6 12.1425 1.3716 -0.3153 16 7 12.9195 0.4604 0.2295 17 14 12.8925 2.8996 -1.0848 18 1 13.0038 3.9670 -0.0585 19 1 14.2428 2.5766 -1.6116 20 1 12.0271 3.3698 -2.1962 21 6 7.7814 2.7160 -1.6027 22 6 6.4332 2.4249 -1.6721 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8901 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 4.2982 1.8765 0.7622 29 1 4.0546 1.3765 -2.0705 30 1 4.3237 -0.1136 -1.1349 31 1 6.4077 -0.4765 0.0520 32 1 8.8134 0.0278 0.1733 33 1 13.8818 0.5823 0.2319 34 1 8.1651 3.6134 -2.0650 35 1 5.7625 3.0952 -2.1891 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067950728.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:36 Heat of formation + Delta-G solvation = -79.412336 kcal Electronic energy + Delta-G solvation = -19643.195064 eV Core-core repulsion = 16348.140818 eV Total energy + Delta-G solvation = -3295.054246 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.087 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.35520 -37.38271 -37.11667 -36.07546 -34.76236 -33.47839 -32.46843 -30.38596 -29.72321 -25.93712 -24.40335 -24.37526 -22.19372 -20.68283 -19.42613 -18.07314 -17.83407 -17.40194 -16.74329 -16.37434 -15.35058 -15.11043 -14.72623 -14.28446 -14.20495 -13.90002 -13.67718 -13.58798 -13.18099 -12.83505 -12.79683 -12.48920 -12.29262 -12.24040 -12.16988 -12.10652 -11.91464 -11.38469 -10.94330 -10.89313 -10.79575 -10.74318 -10.22724 -9.54971 -9.46006 -8.95963 -8.38208 -7.48260 -6.50668 -4.17512 0.08882 1.95241 2.02641 2.73246 3.17828 3.20702 3.34865 3.61166 3.97559 4.16565 4.27245 4.37732 4.53217 4.73555 4.80985 4.91414 5.02166 5.18703 5.19806 5.33815 5.46246 5.52948 5.53369 5.67065 5.88770 6.02967 6.22536 6.45569 6.67402 6.87108 6.98443 7.11307 7.17692 7.49698 7.69714 7.93744 8.84055 9.45010 10.56540 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.044790 B = 0.003096 C = 0.003008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.983963 B = 9041.248325 C = 9305.587690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.635 4.635 3 S 2.610 3.390 4 O -0.962 6.962 5 O -0.958 6.958 6 N -1.114 6.114 7 C 0.172 3.828 8 C -0.198 4.198 9 C -0.056 4.056 10 C -0.225 4.225 11 C 0.166 3.834 12 O -0.213 6.213 13 C -0.391 4.391 14 H 0.108 0.892 15 C 0.064 3.936 16 N -0.876 5.876 17 Si 0.906 3.094 18 H -0.273 1.273 19 H -0.282 1.282 20 H -0.259 1.259 21 C -0.194 4.194 22 C -0.055 4.055 23 H 0.071 0.929 24 H 0.071 0.929 25 H 0.079 0.921 26 H 0.131 0.869 27 H 0.132 0.868 28 H 0.420 0.580 29 H 0.080 0.920 30 H 0.063 0.937 31 H 0.111 0.889 32 H 0.134 0.866 33 H 0.281 0.719 34 H 0.119 0.881 35 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.926 -2.083 -1.519 20.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.764 4.764 3 S 2.702 3.298 4 O -0.953 6.953 5 O -0.948 6.948 6 N -0.874 5.874 7 C 0.047 3.953 8 C -0.200 4.200 9 C -0.075 4.075 10 C -0.244 4.244 11 C 0.113 3.887 12 O -0.117 6.117 13 C -0.467 4.467 14 H 0.125 0.875 15 C -0.140 4.140 16 N -0.513 5.513 17 Si 0.732 3.268 18 H -0.198 1.198 19 H -0.207 1.207 20 H -0.183 1.183 21 C -0.214 4.214 22 C -0.074 4.074 23 H 0.090 0.910 24 H 0.090 0.910 25 H 0.098 0.902 26 H 0.149 0.851 27 H 0.151 0.849 28 H 0.255 0.745 29 H 0.098 0.902 30 H 0.081 0.919 31 H 0.129 0.871 32 H 0.152 0.848 33 H 0.091 0.909 34 H 0.137 0.863 35 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -20.152 -1.236 -1.708 20.262 hybrid contribution 0.976 -0.296 0.189 1.037 sum -19.177 -1.532 -1.518 19.298 Atomic orbital electron populations 1.21494 0.90684 1.04935 1.03409 1.30527 1.07099 1.27071 1.11694 1.04974 0.73434 0.77106 0.74266 1.93598 1.83459 1.73020 1.45187 1.93596 1.83654 1.71895 1.45627 1.55741 1.25109 1.78016 1.28566 1.20016 0.90946 0.96597 0.87763 1.19151 0.93357 0.99022 1.08488 1.20676 0.92776 0.97649 0.96355 1.21269 0.95816 1.00231 1.07073 1.19189 0.84347 0.92687 0.92468 1.83575 1.13701 1.43443 1.71005 1.20786 0.88077 1.01551 1.36264 0.87516 1.24491 0.94794 0.98435 0.96231 1.69643 1.05370 1.33811 1.42506 0.86165 0.78324 0.81886 0.80458 1.19796 1.20724 1.18280 1.20231 0.92681 1.01784 1.06670 1.20581 0.94050 0.95509 0.97309 0.91019 0.90973 0.90154 0.85059 0.84934 0.74469 0.90180 0.91898 0.87070 0.84805 0.90906 0.86326 0.86523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.92 37.15 0.37 -0.53 16 2 C -0.63 -4.08 6.79 37.15 0.25 -3.82 16 3 S 2.61 26.32 5.46 -107.50 -0.59 25.74 16 4 O -0.96 -12.83 18.08 -57.54 -1.04 -13.87 16 5 O -0.96 -12.74 17.50 -57.54 -1.01 -13.74 16 6 N -1.11 -11.54 5.88 -11.66 -0.07 -11.61 16 7 C 0.17 1.88 6.25 -5.19 -0.03 1.84 16 8 C -0.20 -2.89 5.28 -104.57 -0.55 -3.44 16 9 C -0.06 -0.89 9.69 -39.61 -0.38 -1.27 16 10 C -0.22 -4.49 9.17 -39.40 -0.36 -4.86 16 11 C 0.17 3.64 6.65 -39.11 -0.26 3.38 16 12 O -0.21 -5.42 8.59 0.05 0.00 -5.42 16 13 C -0.39 -10.67 9.95 30.89 0.31 -10.36 16 14 H 0.11 2.95 5.44 -52.48 -0.29 2.67 16 15 C 0.06 1.76 5.49 -17.51 -0.10 1.66 16 16 N -0.88 -24.68 13.96 55.48 0.77 -23.91 16 17 Si 0.91 21.14 28.62 -169.99 -4.86 16.28 16 18 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 19 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 20 H -0.26 -6.05 7.11 56.52 0.40 -5.65 16 21 C -0.19 -3.65 9.99 -39.39 -0.39 -4.05 16 22 C -0.06 -0.88 9.69 -39.61 -0.38 -1.27 16 23 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 24 H 0.07 0.41 8.14 -51.92 -0.42 -0.01 16 25 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.13 0.64 8.14 -51.92 -0.42 0.22 16 27 H 0.13 0.67 8.14 -51.92 -0.42 0.25 16 28 H 0.42 4.40 8.61 -34.47 -0.30 4.10 16 29 H 0.08 0.84 7.64 -51.94 -0.40 0.45 16 30 H 0.06 0.52 8.08 -51.93 -0.42 0.10 16 31 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 32 H 0.13 2.83 5.64 -52.49 -0.30 2.54 16 33 H 0.28 7.30 8.31 -40.82 -0.34 6.96 16 34 H 0.12 2.10 8.06 -52.49 -0.42 1.68 16 35 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 LS Contribution 316.87 15.07 4.78 4.78 Total: -1.00 -33.05 316.87 -7.76 -40.81 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -4.21 Total: 3.65 kcal Atomic # 6 Polarization: -21.17 SS G_CDS: -1.54 Total: -22.71 kcal Atomic # 7 Polarization: -36.22 SS G_CDS: 0.71 Total: -35.52 kcal Atomic # 8 Polarization: -30.99 SS G_CDS: -2.05 Total: -33.04 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.86 Total: 16.28 kcal Atomic # 16 Polarization: 26.32 SS G_CDS: -0.59 Total: 25.74 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -33.05 -7.76 -40.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067950728.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.599 kcal (2) G-P(sol) polarization free energy of solvation -33.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds