Wall clock time and date at job start Tue Mar 31 2020 05:30:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.46939 * 2 1 4 4 O 1.42901 * 109.47224 * 120.00241 * 2 1 3 5 5 C 1.35895 * 117.00089 * 84.84582 * 4 2 1 6 6 C 1.38743 * 120.05387 * 354.61923 * 5 4 2 7 7 C 1.38139 * 119.94022 * 180.30427 * 6 5 4 8 8 C 1.38270 * 120.06005 * 359.42058 * 7 6 5 9 9 S 1.76196 * 119.94653 * 180.30464 * 8 7 6 10 10 O 1.42100 * 106.40423 * 23.83806 * 9 8 7 11 11 O 1.42105 * 106.39994 * 156.76081 * 9 8 7 12 12 N 1.65599 * 107.21586 * 270.29519 * 9 8 7 13 13 C 1.36939 * 119.99699 * 65.00358 * 12 9 8 14 14 H 1.07997 * 120.00077 * 0.02562 * 13 12 9 15 15 C 1.38817 * 119.99991 * 179.97438 * 13 12 9 16 16 N 1.31616 * 119.99777 * 0.02562 * 15 13 12 17 17 Si 1.86793 * 119.99875 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.46932 * 90.00568 * 17 15 13 19 19 H 1.48503 * 109.47348 * 210.00428 * 17 15 13 20 20 H 1.48500 * 109.47541 * 330.00790 * 17 15 13 21 21 C 1.38268 * 120.10837 * 0.60345 * 8 7 6 22 22 C 1.38144 * 120.05534 * 359.67813 * 21 8 7 23 23 H 1.09002 * 109.47190 * 59.99966 * 1 2 3 24 24 H 1.09002 * 109.47384 * 179.97438 * 1 2 3 25 25 H 1.09006 * 109.47191 * 299.99539 * 1 2 3 26 26 H 1.09006 * 109.47191 * 240.00460 * 2 1 3 27 27 H 1.09001 * 109.47444 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.47652 * 300.00319 * 3 2 1 29 29 H 1.09001 * 109.47181 * 60.00510 * 3 2 1 30 30 H 1.07991 * 120.02727 * 0.02628 * 6 5 4 31 31 H 1.08005 * 119.96957 * 179.70284 * 7 6 5 32 32 H 0.97000 * 120.00375 * 245.00020 * 12 9 8 33 33 H 0.97003 * 120.00020 * 179.97438 * 16 15 13 34 34 H 1.08000 * 119.97204 * 179.70052 * 21 8 7 35 35 H 1.07999 * 120.02713 * 180.02562 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.1094 -2.0270 1.0989 6 6 1.6553 -2.7030 -0.0244 7 6 1.7556 -4.0793 -0.0883 8 6 2.3188 -4.7821 0.9609 9 16 2.4524 -6.5368 0.8728 10 8 2.4478 -6.8708 -0.5083 11 8 3.5018 -6.9042 1.7579 12 7 1.0604 -7.1670 1.5111 13 6 -0.1388 -6.9498 0.8865 14 1 -0.1766 -6.3679 -0.0225 15 6 -1.3057 -7.4785 1.4212 16 7 -1.2595 -8.1881 2.5287 17 14 -2.9414 -7.1816 0.5695 18 1 -3.1932 -8.2679 -0.4112 19 1 -4.0297 -7.1649 1.5799 20 1 -2.9020 -5.8761 -0.1371 21 6 2.7716 -4.1108 2.0816 22 6 2.6684 -2.7351 2.1529 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8901 26 1 1.8933 -0.5138 -0.8901 27 1 3.1299 1.4426 0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6766 1.9563 0.8900 30 1 1.2198 -2.1541 -0.8461 31 1 1.3978 -4.6064 -0.9604 32 1 1.0943 -7.6900 2.3273 33 1 -2.0749 -8.5573 2.9025 34 1 3.2067 -4.6624 2.9019 35 1 3.0226 -2.2112 3.0283 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071575719.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:00 Heat of formation + Delta-G solvation = -93.960215 kcal Electronic energy + Delta-G solvation = -20458.674360 eV Core-core repulsion = 17162.989271 eV Total energy + Delta-G solvation = -3295.685089 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.087 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.21247 -37.50244 -36.09902 -34.72584 -34.57992 -33.39241 -30.91767 -30.75273 -29.63950 -27.49742 -24.49910 -23.45216 -22.56792 -20.90772 -18.58083 -18.31194 -18.05129 -16.96683 -16.20542 -15.90853 -15.54715 -14.71636 -14.61113 -14.37732 -13.93687 -13.74337 -13.49834 -13.20740 -12.92562 -12.61416 -12.49750 -12.35723 -12.01978 -11.90675 -11.30441 -11.28768 -11.09190 -11.04647 -10.91841 -10.88812 -10.59919 -10.54619 -10.31818 -10.01304 -9.87615 -8.78176 -8.33057 -8.17679 -6.43277 -3.88719 1.28419 1.59893 1.64978 3.09052 3.18938 3.23843 3.25148 3.78377 4.10874 4.52121 4.54215 4.66970 4.81931 4.82984 4.97973 5.01614 5.15007 5.27396 5.31757 5.43443 5.48276 5.54212 5.60590 5.77197 5.84128 5.92855 5.99079 6.21187 6.28501 6.46908 6.63447 6.94359 7.04257 7.46549 7.52042 8.68979 8.83579 9.25788 10.73213 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.015942 B = 0.005765 C = 0.004661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.922177 B = 4855.686472 C = 6005.485898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.074 3.926 3 C -0.147 4.147 4 O -0.311 6.311 5 C 0.165 3.835 6 C -0.236 4.236 7 C 0.020 3.980 8 C -0.695 4.695 9 S 2.632 3.368 10 O -0.974 6.974 11 O -1.001 7.001 12 N -0.953 5.953 13 C -0.281 4.281 14 H 0.102 0.898 15 C 0.031 3.969 16 N -0.883 5.883 17 Si 0.921 3.079 18 H -0.275 1.275 19 H -0.282 1.282 20 H -0.270 1.270 21 C 0.013 3.987 22 C -0.179 4.179 23 H 0.071 0.929 24 H 0.067 0.933 25 H 0.067 0.933 26 H 0.075 0.925 27 H 0.064 0.936 28 H 0.076 0.924 29 H 0.066 0.934 30 H 0.131 0.869 31 H 0.138 0.862 32 H 0.411 0.589 33 H 0.273 0.727 34 H 0.141 0.859 35 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.609 15.100 -3.415 15.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.018 3.982 3 C -0.204 4.204 4 O -0.225 6.225 5 C 0.119 3.881 6 C -0.255 4.255 7 C 0.001 3.999 8 C -0.776 4.776 9 S 2.722 3.278 10 O -0.964 6.964 11 O -0.991 6.991 12 N -0.706 5.706 13 C -0.419 4.419 14 H 0.119 0.881 15 C -0.175 4.175 16 N -0.524 5.524 17 Si 0.748 3.252 18 H -0.201 1.201 19 H -0.208 1.208 20 H -0.194 1.194 21 C -0.006 4.006 22 C -0.198 4.198 23 H 0.090 0.910 24 H 0.087 0.913 25 H 0.086 0.914 26 H 0.093 0.907 27 H 0.083 0.917 28 H 0.095 0.905 29 H 0.085 0.915 30 H 0.148 0.852 31 H 0.156 0.844 32 H 0.247 0.753 33 H 0.083 0.917 34 H 0.158 0.842 35 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 3.360 14.883 -3.650 15.688 hybrid contribution -1.425 0.690 0.060 1.584 sum 1.935 15.573 -3.590 16.099 Atomic orbital electron populations 1.22406 0.94890 1.03639 1.03046 1.22466 0.94558 0.93593 0.87602 1.21848 1.02058 0.93548 1.02993 1.86108 1.80777 1.16718 1.38910 1.19147 0.92716 0.82061 0.94195 1.21332 1.09077 0.95852 0.99259 1.20724 0.89852 0.93048 0.96260 1.31852 1.13535 1.30655 1.01570 1.05243 0.73901 0.74340 0.74316 1.93471 1.87249 1.82585 1.33091 1.93424 1.56350 1.83204 1.66094 1.51590 1.21859 1.57124 1.39994 1.19230 0.84185 1.32800 1.05707 0.88063 1.25191 0.99215 0.97033 0.96090 1.69688 1.29547 1.33472 1.19704 0.86013 0.81334 0.79020 0.78838 1.20113 1.20791 1.19444 1.20699 0.91318 0.93070 0.95480 1.20475 1.06382 0.93996 0.98981 0.91011 0.91349 0.91417 0.90673 0.91687 0.90539 0.91486 0.85170 0.84387 0.75314 0.91700 0.84162 0.85101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 44. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.78 9.17 37.16 0.34 -1.44 16 2 C 0.07 0.78 2.85 -26.73 -0.08 0.70 16 3 C -0.15 -1.18 9.56 37.16 0.36 -0.82 16 4 O -0.31 -4.32 9.80 -19.41 -0.19 -4.51 16 5 C 0.16 2.60 6.60 -39.21 -0.26 2.34 16 6 C -0.24 -3.72 8.24 -39.43 -0.32 -4.05 16 7 C 0.02 0.37 9.51 -39.61 -0.38 -0.01 16 8 C -0.69 -13.66 5.89 -39.56 -0.23 -13.89 16 9 S 2.63 58.27 5.70 -107.50 -0.61 57.66 16 10 O -0.97 -23.51 16.99 -57.17 -0.97 -24.48 16 11 O -1.00 -23.38 17.28 -57.17 -0.99 -24.36 16 12 N -0.95 -22.97 5.75 31.50 0.18 -22.79 16 13 C -0.28 -7.10 9.63 -15.06 -0.15 -7.24 16 14 H 0.10 2.42 7.82 -52.49 -0.41 2.01 16 15 C 0.03 0.80 5.50 -17.43 -0.10 0.71 16 16 N -0.88 -23.52 13.06 55.49 0.72 -22.80 16 17 Si 0.92 19.72 29.55 -169.99 -5.02 14.70 16 18 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 19 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 20 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 21 C 0.01 0.24 9.52 -39.60 -0.38 -0.14 16 22 C -0.18 -2.90 9.99 -39.43 -0.39 -3.29 16 23 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.07 0.77 6.90 -51.93 -0.36 0.41 16 25 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.08 0.76 6.32 -51.93 -0.33 0.43 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.13 1.68 5.43 -52.49 -0.28 1.39 16 31 H 0.14 2.40 7.62 -52.48 -0.40 2.00 16 32 H 0.41 10.07 8.02 -34.47 -0.28 9.79 16 33 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 34 H 0.14 2.33 7.61 -52.49 -0.40 1.93 16 35 H 0.13 1.80 8.06 -52.49 -0.42 1.37 16 LS Contribution 312.70 15.07 4.71 4.71 Total: -1.00 -30.92 312.70 -7.88 -38.80 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: -4.13 Total: 10.19 kcal Atomic # 6 Polarization: -25.54 SS G_CDS: -1.59 Total: -27.13 kcal Atomic # 7 Polarization: -46.49 SS G_CDS: 0.91 Total: -45.59 kcal Atomic # 8 Polarization: -51.21 SS G_CDS: -2.15 Total: -53.35 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.02 Total: 14.70 kcal Atomic # 16 Polarization: 58.27 SS G_CDS: -0.61 Total: 57.66 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -30.92 -7.88 -38.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071575719.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.158 kcal (2) G-P(sol) polarization free energy of solvation -30.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds