Wall clock time and date at job start Tue Mar 31 2020 05:37:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46495 * 120.00163 * 2 1 4 4 C 1.38994 * 119.99841 * 179.97438 * 2 1 3 5 5 N 1.29580 * 125.40782 * 0.03018 * 4 2 1 6 6 N 1.37766 * 115.62836 * 179.97438 * 5 4 2 7 7 C 1.29636 * 115.60529 * 359.97438 * 6 5 4 8 8 S 1.76203 * 125.41269 * 179.97438 * 7 6 5 9 9 C 1.81394 * 102.99993 * 359.97438 * 8 7 6 10 10 C 1.53002 * 109.47305 * 180.02562 * 9 8 7 11 11 C 1.50701 * 115.55000 * 39.92986 * 10 9 8 12 12 H 1.08001 * 119.99564 * 264.89449 * 11 10 9 13 13 C 1.37874 * 119.99924 * 84.88920 * 11 10 9 14 14 N 1.31512 * 119.99993 * 353.91604 * 13 11 10 15 15 Si 1.86803 * 119.99950 * 173.91242 * 13 11 10 16 16 H 1.48500 * 109.47119 * 90.00049 * 15 13 11 17 17 H 1.48496 * 109.47058 * 210.00550 * 15 13 11 18 18 H 1.48500 * 109.46899 * 330.00159 * 15 13 11 19 19 C 1.52997 * 117.49611 * 254.22277 * 10 9 8 20 20 C 1.52995 * 117.49735 * 185.60115 * 10 9 8 21 21 S 1.76040 * 125.40431 * 179.71878 * 4 2 1 22 22 H 1.08996 * 109.46723 * 89.99885 * 1 2 3 23 23 H 1.08999 * 109.46875 * 330.00035 * 1 2 3 24 24 H 1.09000 * 109.46848 * 209.99712 * 1 2 3 25 25 H 1.09003 * 109.47081 * 89.99847 * 3 2 1 26 26 H 1.08994 * 109.47487 * 209.99839 * 3 2 1 27 27 H 1.09000 * 109.47060 * 330.00462 * 3 2 1 28 28 H 1.09007 * 109.47043 * 299.99719 * 9 8 7 29 29 H 1.08999 * 109.47630 * 59.99522 * 9 8 7 30 30 H 0.97003 * 119.99974 * 175.01059 * 14 13 11 31 31 H 1.09000 * 117.50343 * 0.02562 * 19 10 9 32 32 H 1.09005 * 117.49731 * 145.01846 * 19 10 9 33 33 H 1.09009 * 117.49729 * 214.97206 * 20 10 9 34 34 H 1.08998 * 117.50125 * 359.97438 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.1600 -1.2037 0.0005 5 7 1.6207 -2.3820 0.0005 6 7 2.5021 -3.4408 0.0006 7 6 3.7590 -3.1234 0.0001 8 16 5.1006 -4.2657 0.0007 9 6 4.2654 -5.8759 0.0028 10 6 5.3111 -6.9929 0.0041 11 6 6.5165 -6.7537 0.8764 12 1 7.4161 -6.3339 0.4510 13 6 6.4708 -7.0707 2.2174 14 7 5.3413 -7.4686 2.7609 15 14 8.0133 -6.9351 3.2623 16 1 8.0999 -5.5707 3.8422 17 1 7.9587 -7.9361 4.3578 18 1 9.2075 -7.1905 2.4174 19 6 5.5243 -7.7624 -1.3010 20 6 4.8078 -8.4318 -0.1265 21 16 3.9125 -1.3696 -0.0064 22 1 -0.3632 0.0000 -1.0277 23 1 -0.3633 0.8900 0.5138 24 1 -0.3633 -0.8900 0.5138 25 1 2.3792 1.5833 1.0277 26 1 3.1499 1.1384 -0.5138 27 1 1.6085 2.0283 -0.5138 28 1 3.6424 -5.9609 0.8932 29 1 3.6415 -5.9629 -0.8868 30 1 5.3245 -7.7607 3.6858 31 1 4.9201 -7.4727 -2.1606 32 1 6.5368 -8.0957 -1.5290 33 1 5.3490 -9.2056 0.4181 34 1 3.7318 -8.5828 -0.2129 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088259764.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:09 Heat of formation + Delta-G solvation = 95.046913 kcal Electronic energy + Delta-G solvation = -17413.003900 eV Core-core repulsion = 14600.560397 eV Total energy + Delta-G solvation = -2812.443503 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 285.066 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.09715 -36.85486 -36.64553 -32.02482 -30.96427 -28.55469 -27.72190 -26.25685 -25.36502 -23.40258 -21.16315 -20.51140 -19.44898 -18.68332 -16.94880 -16.34614 -15.73066 -15.56495 -14.72981 -14.60719 -14.13089 -13.79876 -13.59451 -13.05838 -12.99411 -12.90406 -12.71864 -12.29836 -12.19005 -11.59041 -11.09107 -10.99352 -10.90707 -10.59372 -10.48775 -10.24570 -9.96648 -9.78932 -9.54557 -9.19638 -8.87373 -8.51658 -8.31318 -8.10648 -6.89839 -6.11569 -4.19364 0.75708 1.17726 1.42502 1.99371 2.66968 2.75969 3.15781 3.28749 3.35838 3.38514 4.36802 4.56444 4.94331 4.98495 5.07022 5.18351 5.24981 5.29250 5.34570 5.52757 5.61926 5.95468 6.13785 6.41108 6.46362 6.58617 6.70014 6.77969 6.79968 7.03263 7.26886 7.42838 7.79870 8.27459 8.37255 8.82293 9.47776 10.96617 Molecular weight = 285.07amu Principal moments of inertia in cm(-1) A = 0.024693 B = 0.004378 C = 0.004066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.637124 B = 6393.934726 C = 6884.065221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.591 5.591 3 C 0.095 3.905 4 C 0.302 3.698 5 N -0.359 5.359 6 N -0.277 5.277 7 C 0.021 3.979 8 S 0.056 5.944 9 C -0.049 4.049 10 C 0.049 3.951 11 C -0.498 4.498 12 H 0.066 0.934 13 C 0.080 3.920 14 N -0.869 5.869 15 Si 0.887 3.113 16 H -0.277 1.277 17 H -0.286 1.286 18 H -0.272 1.272 19 C -0.206 4.206 20 C -0.145 4.145 21 S 0.038 5.962 22 H 0.053 0.947 23 H 0.071 0.929 24 H 0.078 0.922 25 H 0.059 0.941 26 H 0.069 0.931 27 H 0.080 0.920 28 H 0.094 0.906 29 H 0.064 0.936 30 H 0.263 0.737 31 H 0.068 0.932 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.161 15.045 -5.246 16.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.314 5.314 3 C -0.048 4.048 4 C -0.080 4.080 5 N -0.195 5.195 6 N -0.106 5.106 7 C -0.378 4.378 8 S 0.288 5.712 9 C -0.199 4.199 10 C 0.046 3.954 11 C -0.537 4.537 12 H 0.084 0.916 13 C -0.125 4.125 14 N -0.504 5.504 15 Si 0.714 3.286 16 H -0.203 1.203 17 H -0.211 1.211 18 H -0.197 1.197 19 C -0.244 4.244 20 C -0.185 4.185 21 S 0.271 5.729 22 H 0.071 0.929 23 H 0.089 0.911 24 H 0.097 0.903 25 H 0.077 0.923 26 H 0.088 0.912 27 H 0.099 0.901 28 H 0.112 0.888 29 H 0.082 0.918 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.100 0.900 33 H 0.104 0.896 34 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.605 15.133 -5.063 16.609 hybrid contribution -0.694 -0.184 0.746 1.036 sum -5.299 14.949 -4.317 16.437 Atomic orbital electron populations 1.21681 0.77284 1.03288 1.01776 1.45592 1.05519 1.00379 1.79938 1.21827 0.96876 0.83901 1.02204 1.25845 0.91961 0.91212 0.99004 1.74996 1.25259 0.93479 1.25718 1.75483 0.97151 1.19448 1.18488 1.31415 1.02260 0.99234 1.04852 1.86158 1.00066 0.97208 1.87786 1.23402 1.00386 0.92020 1.04140 1.18495 0.94817 0.87660 0.94415 1.20367 0.97122 1.43785 0.92435 0.91619 1.24945 0.95732 0.94381 0.97447 1.70008 1.24767 1.41824 1.13774 0.86666 0.83622 0.78141 0.80130 1.20255 1.21140 1.19665 1.23108 1.00561 1.08581 0.92105 1.22566 0.97378 0.98149 1.00405 1.85259 1.03968 1.03656 1.80051 0.92883 0.91070 0.90307 0.92260 0.91228 0.90105 0.88774 0.91761 0.92748 0.91384 0.90017 0.89633 0.91590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.98 10.57 59.85 0.63 1.61 16 2 N -0.59 -6.92 3.39 -190.16 -0.64 -7.56 16 3 C 0.10 0.73 10.45 59.84 0.63 1.36 16 4 C 0.30 4.82 8.00 -87.39 -0.70 4.12 16 5 N -0.36 -6.95 11.37 30.85 0.35 -6.60 16 6 N -0.28 -5.91 11.62 31.12 0.36 -5.55 16 7 C 0.02 0.41 7.82 51.84 0.41 0.82 16 8 S 0.06 1.16 21.01 -107.50 -2.26 -1.10 16 9 C -0.05 -1.12 5.65 37.16 0.21 -0.91 16 10 C 0.05 1.15 1.65 -155.66 -0.26 0.89 16 11 C -0.50 -12.82 7.55 -34.44 -0.26 -13.08 16 12 H 0.07 1.70 7.82 -52.49 -0.41 1.29 16 13 C 0.08 2.11 5.39 -17.82 -0.10 2.02 16 14 N -0.87 -23.84 12.93 55.43 0.72 -23.12 16 15 Si 0.89 20.49 29.55 -169.99 -5.02 15.47 16 16 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 17 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 18 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 19 C -0.21 -4.33 9.88 -26.73 -0.26 -4.60 16 20 C -0.15 -3.29 9.46 -26.73 -0.25 -3.54 16 21 S 0.04 0.60 22.01 -107.50 -2.37 -1.77 16 22 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 23 H 0.07 0.45 8.07 -51.93 -0.42 0.03 16 24 H 0.08 0.89 7.64 -51.93 -0.40 0.49 16 25 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.07 0.55 7.10 -51.93 -0.37 0.18 16 27 H 0.08 0.41 8.07 -51.93 -0.42 -0.01 16 28 H 0.09 2.37 8.14 -51.92 -0.42 1.94 16 29 H 0.06 1.37 7.95 -51.92 -0.41 0.96 16 30 H 0.26 6.94 8.32 -40.82 -0.34 6.60 16 31 H 0.07 1.30 8.08 -51.93 -0.42 0.88 16 32 H 0.08 1.68 8.14 -51.93 -0.42 1.26 16 33 H 0.09 2.04 8.14 -51.92 -0.42 1.62 16 34 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 LS Contribution 321.52 15.07 4.85 4.85 Total: -1.00 -29.92 321.52 -8.49 -38.41 By element: Atomic # 1 Polarization: 2.81 SS G_CDS: -4.52 Total: -1.71 kcal Atomic # 6 Polarization: -11.36 SS G_CDS: 0.05 Total: -11.31 kcal Atomic # 7 Polarization: -43.62 SS G_CDS: 0.78 Total: -42.84 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Atomic # 16 Polarization: 1.76 SS G_CDS: -4.62 Total: -2.86 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -29.92 -8.49 -38.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088259764.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.461 kcal (2) G-P(sol) polarization free energy of solvation -29.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds