Wall clock time and date at job start Tue Mar 31 2020 05:31:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35896 * 116.99780 * 2 1 4 4 C 1.38728 * 120.05747 * 180.02562 * 3 2 1 5 5 C 1.38146 * 119.94682 * 179.97438 * 4 3 2 6 6 C 1.38262 * 120.05366 * 359.97438 * 5 4 3 7 7 C 1.50703 * 119.94066 * 180.02562 * 6 5 4 8 8 H 1.08996 * 109.47485 * 339.99244 * 7 6 5 9 9 C 1.52998 * 109.47557 * 100.00156 * 7 6 5 10 10 N 1.46500 * 109.46652 * 219.99886 * 7 6 5 11 11 S 1.65606 * 120.00055 * 145.00142 * 10 7 6 12 12 O 1.42105 * 106.40008 * 311.45637 * 11 10 7 13 13 O 1.42098 * 106.40370 * 178.53822 * 11 10 7 14 14 C 1.76193 * 107.21910 * 64.99793 * 11 10 7 15 15 H 1.08002 * 120.00351 * 0.02562 * 14 11 10 16 16 C 1.37881 * 120.00314 * 180.02562 * 14 11 10 17 17 N 1.31523 * 119.99660 * 359.97438 * 16 14 11 18 18 Si 1.86796 * 120.00522 * 179.97438 * 16 14 11 19 19 H 1.48507 * 109.46652 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47242 * 119.99675 * 18 16 14 21 21 H 1.48499 * 109.47269 * 239.99877 * 18 16 14 22 22 C 1.38264 * 120.11478 * 0.27282 * 6 5 4 23 23 C 1.38150 * 120.04999 * 359.45482 * 22 6 5 24 24 H 1.09000 * 109.47239 * 300.00086 * 1 2 3 25 25 H 1.09004 * 109.47189 * 60.00418 * 1 2 3 26 26 H 1.09003 * 109.46878 * 180.02562 * 1 2 3 27 27 H 1.08003 * 120.02806 * 359.95159 * 4 3 2 28 28 H 1.08005 * 119.97054 * 180.02562 * 5 4 3 29 29 H 1.09001 * 109.47012 * 179.97438 * 9 7 6 30 30 H 1.09003 * 109.46696 * 299.99577 * 9 7 6 31 31 H 1.08996 * 109.47053 * 59.99419 * 9 7 6 32 32 H 0.97002 * 120.00335 * 325.00182 * 10 7 6 33 33 H 0.96997 * 119.99726 * 180.02562 * 17 16 14 34 34 H 1.08001 * 119.97558 * 179.70393 * 22 6 5 35 35 H 1.08008 * 120.02263 * 180.27302 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4312 1.2849 -0.0005 5 6 4.0560 2.5170 -0.0011 6 6 3.3017 3.6758 -0.0016 7 6 3.9859 5.0186 -0.0028 8 1 5.0114 4.9043 0.3485 9 6 3.9938 5.5859 -1.4237 10 7 3.2651 5.9346 0.8847 11 16 4.0990 7.0633 1.7639 12 8 5.1717 6.3723 2.3894 13 8 3.1274 7.8072 2.4863 14 6 4.8301 8.1825 0.6162 15 1 4.6810 8.0425 -0.4443 16 6 5.5925 9.2371 1.0717 17 7 5.7737 9.4079 2.3632 18 14 6.3682 10.4233 -0.1451 19 1 6.0159 10.0139 -1.5284 20 1 5.8615 11.7957 0.1098 21 1 7.8443 10.4028 0.0160 22 6 1.9209 3.6048 0.0041 23 6 1.2914 2.3751 -0.0011 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 4.0208 0.3800 -0.0002 28 1 5.1345 2.5751 -0.0019 29 1 4.4883 6.5573 -1.4243 30 1 4.5301 4.9043 -2.0840 31 1 2.9683 5.7002 -1.7749 32 1 2.2993 5.8800 0.9573 33 1 6.3097 10.1501 2.6837 34 1 1.3340 4.5114 0.0085 35 1 0.2128 2.3201 -0.0011 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000090310526.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:49 Heat of formation + Delta-G solvation = -108.645769 kcal Electronic energy + Delta-G solvation = -20369.372039 eV Core-core repulsion = 17073.050137 eV Total energy + Delta-G solvation = -3296.321902 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.087 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.18753 -38.07243 -35.33112 -34.92968 -33.92077 -33.08482 -31.06545 -30.15827 -28.54435 -27.26437 -26.07601 -23.36171 -22.43828 -20.54399 -19.02110 -18.23478 -17.49467 -16.56742 -16.08234 -15.84133 -15.70932 -14.82656 -14.76909 -14.11101 -13.89757 -13.78359 -13.43476 -13.27406 -13.13034 -12.51007 -12.43648 -12.06935 -12.00424 -11.74067 -11.23331 -11.21182 -11.01043 -10.78021 -10.64889 -10.51865 -10.26787 -10.22835 -10.13863 -9.24745 -9.02376 -8.94625 -8.53449 -8.04479 -6.69080 -5.30645 1.38707 1.45564 2.37856 3.05990 3.14687 3.18315 3.21081 3.80117 4.07265 4.65363 4.74297 4.76259 4.87512 4.94524 4.96112 4.99831 5.25796 5.42397 5.45984 5.57702 5.68193 5.74646 5.88073 6.00908 6.06137 6.21520 6.28226 6.38703 6.48524 6.57650 6.71969 6.81138 6.97421 7.34564 7.35853 7.91682 8.01047 8.90586 10.25206 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.035321 B = 0.004150 C = 0.004006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.544178 B = 6745.594898 C = 6988.486364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.321 6.321 3 C 0.115 3.885 4 C -0.149 4.149 5 C -0.072 4.072 6 C -0.109 4.109 7 C 0.197 3.803 8 H 0.100 0.900 9 C -0.171 4.171 10 N -1.131 6.131 11 S 2.713 3.287 12 O -1.007 7.007 13 O -1.008 7.008 14 C -1.020 5.020 15 H 0.107 0.893 16 C 0.133 3.867 17 N -0.845 5.845 18 Si 0.919 3.081 19 H -0.262 1.262 20 H -0.272 1.272 21 H -0.271 1.271 22 C -0.071 4.071 23 C -0.206 4.206 24 H 0.055 0.945 25 H 0.054 0.946 26 H 0.097 0.903 27 H 0.129 0.871 28 H 0.134 0.866 29 H 0.079 0.921 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.400 0.600 33 H 0.290 0.710 34 H 0.126 0.874 35 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.330 -13.781 -8.184 17.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.235 6.235 3 C 0.071 3.929 4 C -0.168 4.168 5 C -0.091 4.091 6 C -0.111 4.111 7 C 0.089 3.911 8 H 0.118 0.882 9 C -0.230 4.230 10 N -0.884 5.884 11 S 2.813 3.187 12 O -0.997 6.997 13 O -0.998 6.998 14 C -1.154 5.154 15 H 0.125 0.875 16 C -0.085 4.085 17 N -0.475 5.475 18 Si 0.743 3.257 19 H -0.186 1.186 20 H -0.197 1.197 21 H -0.196 1.196 22 C -0.090 4.090 23 C -0.225 4.225 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.115 0.885 27 H 0.147 0.853 28 H 0.152 0.848 29 H 0.098 0.902 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.231 0.769 33 H 0.100 0.900 34 H 0.144 0.856 35 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -6.920 -13.864 -7.071 17.032 hybrid contribution -0.245 0.986 -1.138 1.526 sum -7.166 -12.878 -8.209 16.870 Atomic orbital electron populations 1.23017 0.78681 1.03628 1.01372 1.86043 1.21168 1.27209 1.89054 1.19015 0.92412 0.83966 0.97554 1.20377 0.91250 0.98525 1.06650 1.20918 1.00226 0.90746 0.97204 1.20087 0.93823 0.95285 1.01894 1.19442 0.95915 0.85144 0.90638 0.88221 1.22439 1.02386 1.02550 0.95577 1.56151 1.18350 1.51746 1.62195 1.00455 0.72512 0.72177 0.73536 1.93359 1.55540 1.75201 1.75556 1.93371 1.63038 1.71157 1.72274 1.30695 1.47007 1.27926 1.09736 0.87483 1.24753 0.92046 0.96065 0.95655 1.69915 1.34099 1.29978 1.13504 0.86150 0.78972 0.79598 0.80938 1.18584 1.19692 1.19649 1.20764 0.94179 0.96993 0.97043 1.21178 0.99807 0.92305 1.09207 0.92678 0.92753 0.88499 0.85289 0.84824 0.90198 0.92160 0.92511 0.76892 0.89978 0.85615 0.85648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.32 -3.75 10.50 -19.41 -0.20 -3.95 16 3 C 0.12 1.48 6.69 -39.22 -0.26 1.22 16 4 C -0.15 -1.91 9.99 -39.43 -0.39 -2.30 16 5 C -0.07 -0.98 9.66 -39.61 -0.38 -1.36 16 6 C -0.11 -1.62 4.96 -104.60 -0.52 -2.14 16 7 C 0.20 3.35 3.11 -69.08 -0.21 3.14 16 8 H 0.10 1.81 7.36 -51.93 -0.38 1.43 16 9 C -0.17 -2.58 9.50 37.16 0.35 -2.22 16 10 N -1.13 -22.19 5.42 -5.88 -0.03 -22.22 16 11 S 2.71 71.21 5.00 -107.50 -0.54 70.67 16 12 O -1.01 -29.23 17.36 -57.17 -0.99 -30.23 16 13 O -1.01 -29.51 18.02 -57.17 -1.03 -30.54 16 14 C -1.02 -27.32 9.57 30.60 0.29 -27.03 16 15 H 0.11 2.57 5.61 -52.49 -0.29 2.28 16 16 C 0.13 3.65 5.46 -17.81 -0.10 3.55 16 17 N -0.85 -24.72 13.19 55.43 0.73 -23.98 16 18 Si 0.92 20.26 29.54 -169.99 -5.02 15.24 16 19 H -0.26 -5.52 7.11 56.52 0.40 -5.11 16 20 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 21 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 22 C -0.07 -0.97 9.15 -39.60 -0.36 -1.33 16 23 C -0.21 -2.53 9.04 -39.43 -0.36 -2.89 16 24 H 0.05 0.39 7.66 -51.93 -0.40 0.00 16 25 H 0.05 0.37 7.66 -51.93 -0.40 -0.03 16 26 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.13 1.41 8.06 -52.48 -0.42 0.98 16 28 H 0.13 1.58 8.03 -52.48 -0.42 1.16 16 29 H 0.08 1.34 5.74 -51.93 -0.30 1.04 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.40 6.83 7.06 -34.47 -0.24 6.59 16 33 H 0.29 7.60 8.31 -40.82 -0.34 7.26 16 34 H 0.13 1.55 6.80 -52.49 -0.36 1.19 16 35 H 0.13 1.23 6.30 -52.48 -0.33 0.90 16 LS Contribution 310.31 15.07 4.68 4.68 Total: -1.00 -35.50 310.31 -7.31 -42.81 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -3.95 Total: 7.68 kcal Atomic # 6 Polarization: -29.20 SS G_CDS: -0.95 Total: -30.16 kcal Atomic # 7 Polarization: -46.90 SS G_CDS: 0.70 Total: -46.20 kcal Atomic # 8 Polarization: -62.49 SS G_CDS: -2.23 Total: -64.72 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Atomic # 16 Polarization: 71.21 SS G_CDS: -0.54 Total: 70.67 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -35.50 -7.31 -42.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090310526.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.836 kcal (2) G-P(sol) polarization free energy of solvation -35.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds