Wall clock time and date at job start Tue Mar 31 2020 05:31:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35896 * 116.99780 * 2 1 4 4 C 1.38728 * 120.05747 * 180.02562 * 3 2 1 5 5 C 1.38146 * 119.94682 * 179.97438 * 4 3 2 6 6 C 1.38262 * 120.05366 * 359.97438 * 5 4 3 7 7 C 1.50703 * 119.94066 * 180.02562 * 6 5 4 8 8 H 1.08996 * 109.47485 * 339.99244 * 7 6 5 9 9 C 1.52998 * 109.47557 * 100.00156 * 7 6 5 10 10 N 1.46500 * 109.46652 * 219.99886 * 7 6 5 11 11 S 1.65606 * 120.00055 * 145.00142 * 10 7 6 12 12 O 1.42105 * 106.40008 * 311.45637 * 11 10 7 13 13 O 1.42098 * 106.40370 * 178.53822 * 11 10 7 14 14 C 1.76193 * 107.21910 * 64.99793 * 11 10 7 15 15 H 1.08002 * 120.00351 * 0.02562 * 14 11 10 16 16 C 1.37881 * 120.00314 * 180.02562 * 14 11 10 17 17 N 1.31523 * 119.99660 * 359.97438 * 16 14 11 18 18 Si 1.86796 * 120.00522 * 179.97438 * 16 14 11 19 19 H 1.48507 * 109.46652 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47242 * 119.99675 * 18 16 14 21 21 H 1.48499 * 109.47269 * 239.99877 * 18 16 14 22 22 C 1.38264 * 120.11478 * 0.27282 * 6 5 4 23 23 C 1.38150 * 120.04999 * 359.45482 * 22 6 5 24 24 H 1.09000 * 109.47239 * 300.00086 * 1 2 3 25 25 H 1.09004 * 109.47189 * 60.00418 * 1 2 3 26 26 H 1.09003 * 109.46878 * 180.02562 * 1 2 3 27 27 H 1.08003 * 120.02806 * 359.95159 * 4 3 2 28 28 H 1.08005 * 119.97054 * 180.02562 * 5 4 3 29 29 H 1.09001 * 109.47012 * 179.97438 * 9 7 6 30 30 H 1.09003 * 109.46696 * 299.99577 * 9 7 6 31 31 H 1.08996 * 109.47053 * 59.99419 * 9 7 6 32 32 H 0.97002 * 120.00335 * 325.00182 * 10 7 6 33 33 H 0.96997 * 119.99726 * 180.02562 * 17 16 14 34 34 H 1.08001 * 119.97558 * 179.70393 * 22 6 5 35 35 H 1.08008 * 120.02263 * 180.27302 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4312 1.2849 -0.0005 5 6 4.0560 2.5170 -0.0011 6 6 3.3017 3.6758 -0.0016 7 6 3.9859 5.0186 -0.0028 8 1 5.0114 4.9043 0.3485 9 6 3.9938 5.5859 -1.4237 10 7 3.2651 5.9346 0.8847 11 16 4.0990 7.0633 1.7639 12 8 5.1717 6.3723 2.3894 13 8 3.1274 7.8072 2.4863 14 6 4.8301 8.1825 0.6162 15 1 4.6810 8.0425 -0.4443 16 6 5.5925 9.2371 1.0717 17 7 5.7737 9.4079 2.3632 18 14 6.3682 10.4233 -0.1451 19 1 6.0159 10.0139 -1.5284 20 1 5.8615 11.7957 0.1098 21 1 7.8443 10.4028 0.0160 22 6 1.9209 3.6048 0.0041 23 6 1.2914 2.3751 -0.0011 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 4.0208 0.3800 -0.0002 28 1 5.1345 2.5751 -0.0019 29 1 4.4883 6.5573 -1.4243 30 1 4.5301 4.9043 -2.0840 31 1 2.9683 5.7002 -1.7749 32 1 2.2993 5.8800 0.9573 33 1 6.3097 10.1501 2.6837 34 1 1.3340 4.5114 0.0085 35 1 0.2128 2.3201 -0.0011 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000090310526.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:49 Heat of formation + Delta-G solvation = -136.030132 kcal Electronic energy + Delta-G solvation = -20370.559514 eV Core-core repulsion = 17073.050137 eV Total energy + Delta-G solvation = -3297.509377 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.087 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.13504 -39.10639 -37.38795 -36.35105 -36.11658 -35.15570 -32.04736 -31.43112 -29.70441 -28.26782 -27.90639 -24.49008 -23.45538 -21.72213 -20.98633 -19.42198 -19.10098 -18.36882 -17.43936 -17.09656 -16.64460 -16.58458 -15.98740 -15.85144 -15.54895 -14.92424 -14.71252 -14.46034 -14.21528 -13.96634 -13.85575 -13.44843 -13.16280 -13.00695 -12.81388 -12.74954 -12.50258 -12.47171 -12.28072 -12.24761 -11.86876 -11.73117 -11.65643 -11.23741 -10.92880 -10.27115 -9.93820 -9.05372 -8.72434 -7.44304 0.28637 0.41113 0.51829 1.36016 1.37422 1.54670 2.23444 2.40276 2.61486 2.76256 3.04386 3.70005 3.76958 3.86777 3.98458 4.27759 4.34080 4.42049 4.42781 4.47088 4.49720 4.59618 4.73462 4.74707 4.77252 4.95164 5.07904 5.20468 5.25212 5.34913 5.39953 5.48587 5.74130 5.80400 6.00349 6.39381 6.46686 6.82692 8.24482 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.035321 B = 0.004150 C = 0.004006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.544178 B = 6745.594898 C = 6988.486364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.334 6.334 3 C 0.113 3.887 4 C -0.157 4.157 5 C -0.079 4.079 6 C -0.128 4.128 7 C 0.191 3.809 8 H 0.081 0.919 9 C -0.167 4.167 10 N -1.115 6.115 11 S 2.717 3.283 12 O -1.045 7.045 13 O -1.048 7.048 14 C -1.034 5.034 15 H 0.130 0.870 16 C 0.069 3.931 17 N -0.897 5.897 18 Si 0.990 3.010 19 H -0.243 1.243 20 H -0.263 1.263 21 H -0.261 1.261 22 C -0.079 4.079 23 C -0.205 4.205 24 H 0.060 0.940 25 H 0.065 0.935 26 H 0.119 0.881 27 H 0.145 0.855 28 H 0.143 0.857 29 H 0.061 0.939 30 H 0.084 0.916 31 H 0.071 0.929 32 H 0.412 0.588 33 H 0.298 0.702 34 H 0.135 0.865 35 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.066 -14.543 -10.365 19.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.248 6.248 3 C 0.067 3.933 4 C -0.175 4.175 5 C -0.098 4.098 6 C -0.130 4.130 7 C 0.084 3.916 8 H 0.099 0.901 9 C -0.226 4.226 10 N -0.874 5.874 11 S 2.818 3.182 12 O -1.035 7.035 13 O -1.038 7.038 14 C -1.168 5.168 15 H 0.148 0.852 16 C -0.143 4.143 17 N -0.528 5.528 18 Si 0.809 3.191 19 H -0.166 1.166 20 H -0.187 1.187 21 H -0.186 1.186 22 C -0.098 4.098 23 C -0.224 4.224 24 H 0.079 0.921 25 H 0.084 0.916 26 H 0.138 0.862 27 H 0.162 0.838 28 H 0.161 0.839 29 H 0.080 0.920 30 H 0.103 0.897 31 H 0.090 0.910 32 H 0.247 0.753 33 H 0.108 0.892 34 H 0.153 0.847 35 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -7.685 -14.655 -9.245 18.955 hybrid contribution -0.120 1.043 -0.455 1.144 sum -7.805 -13.612 -9.700 18.447 Atomic orbital electron populations 1.23337 0.76587 1.05539 1.02194 1.86037 1.23363 1.26617 1.88732 1.19208 0.92669 0.84662 0.96727 1.20592 0.91799 0.98753 1.06361 1.21070 1.00857 0.90736 0.97089 1.19935 0.94528 0.94239 1.04284 1.19612 0.94961 0.86061 0.90923 0.90059 1.22398 1.03544 1.01956 0.94671 1.55537 1.18829 1.50982 1.62066 0.99959 0.71954 0.72438 0.73837 1.93303 1.57167 1.75957 1.77034 1.93305 1.63838 1.72639 1.74009 1.31030 1.46884 1.27957 1.10930 0.85181 1.26034 0.92439 0.98206 0.97662 1.70017 1.35526 1.31364 1.15927 0.85095 0.78279 0.76970 0.78782 1.16572 1.18724 1.18561 1.20925 0.93762 0.98044 0.97040 1.21418 1.01143 0.91545 1.08293 0.92091 0.91605 0.86231 0.83771 0.83897 0.92017 0.89673 0.91003 0.75323 0.89242 0.84736 0.83147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.81 113.37 1.11 1.33 16 2 O -0.33 -7.01 10.50 -92.38 -0.97 -7.98 16 3 C 0.11 2.66 6.69 22.50 0.15 2.81 16 4 C -0.16 -3.76 9.99 22.37 0.22 -3.53 16 5 C -0.08 -2.06 9.66 22.25 0.22 -1.85 16 6 C -0.13 -3.68 4.96 -19.85 -0.10 -3.78 16 7 C 0.19 6.45 3.11 44.25 0.14 6.59 16 8 H 0.08 3.01 7.36 -2.39 -0.02 3.00 16 9 C -0.17 -4.79 9.50 71.98 0.68 -4.11 16 10 N -1.12 -43.93 5.42 -172.52 -0.94 -44.86 16 11 S 2.72 146.06 5.00 -56.49 -0.28 145.78 16 12 O -1.04 -62.84 17.36 -128.00 -2.22 -65.07 16 13 O -1.05 -63.16 18.02 -128.00 -2.31 -65.47 16 14 C -1.03 -55.57 9.57 67.74 0.65 -54.92 16 15 H 0.13 6.15 5.61 -2.91 -0.02 6.13 16 16 C 0.07 3.80 5.46 84.65 0.46 4.26 16 17 N -0.90 -53.51 13.19 21.45 0.28 -53.23 16 18 Si 0.99 40.66 29.54 68.60 2.03 42.68 16 19 H -0.24 -9.13 7.11 99.48 0.71 -8.42 16 20 H -0.26 -10.31 7.11 99.48 0.71 -9.61 16 21 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 22 C -0.08 -2.02 9.15 22.26 0.20 -1.82 16 23 C -0.21 -4.58 9.04 22.37 0.20 -4.38 16 24 H 0.06 0.70 7.66 -2.39 -0.02 0.68 16 25 H 0.07 0.68 7.66 -2.38 -0.02 0.66 16 26 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.14 2.91 8.06 -2.91 -0.02 2.89 16 28 H 0.14 3.30 8.03 -2.91 -0.02 3.28 16 29 H 0.06 1.99 5.74 -2.39 -0.01 1.97 16 30 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.41 14.01 7.06 -96.74 -0.68 13.33 16 33 H 0.30 15.93 8.31 -92.71 -0.77 15.16 16 34 H 0.13 3.08 6.80 -2.91 -0.02 3.06 16 35 H 0.15 2.49 6.30 -2.91 -0.02 2.47 16 Total: -1.00 -77.69 310.31 -0.03 -77.72 By element: Atomic # 1 Polarization: 29.37 SS G_CDS: 0.44 Total: 29.81 kcal Atomic # 6 Polarization: -63.33 SS G_CDS: 3.94 Total: -59.39 kcal Atomic # 7 Polarization: -97.43 SS G_CDS: -0.65 Total: -98.09 kcal Atomic # 8 Polarization: -133.02 SS G_CDS: -5.50 Total: -138.52 kcal Atomic # 14 Polarization: 40.66 SS G_CDS: 2.03 Total: 42.68 kcal Atomic # 16 Polarization: 146.06 SS G_CDS: -0.28 Total: 145.78 kcal Total: -77.69 -0.03 -77.72 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090310526.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.314 kcal (2) G-P(sol) polarization free energy of solvation -77.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds