Wall clock time and date at job start Tue Mar 31 2020 05:39:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42903 * 113.99743 * 2 1 4 4 C 1.53005 * 109.47099 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.46690 * 65.00192 * 4 3 2 6 6 S 1.65600 * 119.99765 * 164.72873 * 5 4 3 7 7 O 1.42094 * 106.40512 * 178.53760 * 6 5 4 8 8 O 1.42106 * 106.40226 * 311.45618 * 6 5 4 9 9 C 1.76198 * 107.22067 * 64.99582 * 6 5 4 10 10 C 1.38640 * 119.75037 * 269.72949 * 9 6 5 11 11 C 1.37618 * 120.24754 * 179.72238 * 10 9 6 12 12 C 1.40708 * 119.74303 * 0.56852 * 11 10 9 13 13 C 1.41395 * 120.24350 * 179.68190 * 12 11 10 14 14 H 1.07999 * 120.00421 * 204.40366 * 13 12 11 15 15 C 1.39948 * 120.00045 * 24.41232 * 13 12 11 16 16 N 1.30828 * 119.99938 * 17.83864 * 15 13 12 17 17 Si 1.86804 * 120.00206 * 197.84763 * 15 13 12 18 18 H 1.48497 * 109.46953 * 59.99362 * 17 15 13 19 19 H 1.48494 * 109.47057 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.46965 * 299.99721 * 17 15 13 21 21 C 1.40718 * 119.51587 * 359.70656 * 12 11 10 22 22 C 1.37623 * 119.74191 * 359.97438 * 21 12 11 23 23 H 1.08997 * 109.47137 * 59.99803 * 1 2 3 24 24 H 1.08997 * 109.46851 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46838 * 299.99477 * 1 2 3 26 26 H 1.09004 * 109.47174 * 60.00524 * 3 2 1 27 27 H 1.08999 * 109.47572 * 300.00113 * 3 2 1 28 28 H 1.08997 * 109.46914 * 305.00306 * 4 3 2 29 29 H 1.08999 * 109.47332 * 184.99902 * 4 3 2 30 30 H 0.96997 * 120.00372 * 344.99577 * 5 4 3 31 31 H 1.08001 * 119.87510 * 359.97438 * 10 9 6 32 32 H 1.07997 * 120.12712 * 180.27635 * 11 10 9 33 33 H 0.96994 * 120.00050 * 180.02562 * 16 15 13 34 34 H 1.07995 * 120.13001 * 179.97438 * 21 12 11 35 35 H 1.07999 * 119.87507 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1848 -0.0006 5 7 3.9756 0.5646 -1.2528 6 16 5.5672 0.6466 -1.7027 7 8 5.6759 -0.0683 -2.9259 8 8 5.9550 2.0063 -1.5601 9 6 6.4936 -0.2625 -0.5111 10 6 6.9945 0.3828 0.6091 11 6 7.7146 -0.3185 1.5491 12 6 7.9519 -1.6930 1.3638 13 6 8.6961 -2.4224 2.3196 14 1 9.2109 -3.3259 2.0281 15 6 8.7654 -1.9736 3.6433 16 7 7.8907 -1.1078 4.0872 17 14 10.1070 -2.6105 4.7765 18 1 11.4366 -2.2674 4.2112 19 1 9.9624 -1.9848 6.1154 20 1 9.9887 -4.0853 4.9035 21 6 7.4435 -2.3363 0.2202 22 6 6.7205 -1.6165 -0.7034 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 1.6886 1.8464 0.8901 27 1 1.6886 1.8465 -0.8899 28 1 3.8515 0.5683 0.8409 29 1 3.9785 2.1766 0.0889 30 1 3.3341 0.1092 -1.8203 31 1 6.8155 1.4390 0.7465 32 1 8.1001 0.1852 2.4232 33 1 7.9390 -0.7965 5.0045 34 1 7.6201 -3.3908 0.0679 35 1 6.3297 -2.1080 -1.5821 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092130849.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:14 Heat of formation + Delta-G solvation = -113.888121 kcal Electronic energy + Delta-G solvation = -20249.611124 eV Core-core repulsion = 16953.061897 eV Total energy + Delta-G solvation = -3296.549228 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.087 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -38.12817 -37.53867 -36.45088 -35.09390 -34.71428 -34.00907 -30.22750 -29.43346 -29.02872 -26.25582 -25.78783 -22.49645 -21.46397 -21.09444 -18.89287 -17.59148 -17.14819 -16.70953 -16.44632 -16.20216 -15.48905 -15.36700 -14.73284 -14.15106 -14.06413 -13.37045 -13.33363 -13.13712 -12.51797 -12.38059 -12.15936 -11.92587 -11.75419 -11.49541 -11.42780 -11.32487 -11.24637 -11.19436 -10.98013 -10.86834 -10.40720 -9.79563 -9.72897 -9.61278 -9.47625 -8.97878 -7.92899 -7.66804 -7.12140 -4.77545 1.31881 2.28979 2.89384 2.90980 2.95328 2.96790 3.63987 3.68041 3.83970 4.26561 4.57543 4.91237 5.05111 5.18889 5.22360 5.27754 5.37731 5.42243 5.52750 5.69053 5.94010 6.10841 6.14431 6.23536 6.70675 6.73816 6.94618 7.05874 7.08371 7.35985 7.41087 7.46517 7.66460 7.79765 7.99879 8.34369 8.54053 8.68115 9.79360 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.018395 B = 0.004762 C = 0.004182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.806176 B = 5878.915427 C = 6692.978713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.385 6.385 3 C 0.055 3.945 4 C 0.123 3.877 5 N -1.123 6.123 6 S 2.695 3.305 7 O -0.987 6.987 8 O -0.987 6.987 9 C -0.786 4.786 10 C -0.018 4.018 11 C -0.183 4.183 12 C 0.140 3.860 13 C -0.437 4.437 14 H 0.087 0.913 15 C 0.073 3.927 16 N -0.767 5.767 17 Si 0.917 3.083 18 H -0.259 1.259 19 H -0.274 1.274 20 H -0.261 1.261 21 C -0.239 4.239 22 C 0.004 3.996 23 H 0.039 0.961 24 H 0.085 0.915 25 H 0.040 0.960 26 H 0.062 0.938 27 H 0.056 0.944 28 H 0.078 0.922 29 H 0.090 0.910 30 H 0.413 0.587 31 H 0.103 0.897 32 H 0.122 0.878 33 H 0.289 0.711 34 H 0.100 0.900 35 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.819 3.103 -1.415 10.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.304 6.304 3 C -0.023 4.023 4 C -0.004 4.004 5 N -0.880 5.880 6 S 2.794 3.206 7 O -0.978 6.978 8 O -0.977 6.977 9 C -0.882 4.882 10 C -0.038 4.038 11 C -0.203 4.203 12 C 0.136 3.864 13 C -0.464 4.464 14 H 0.105 0.895 15 C -0.149 4.149 16 N -0.389 5.389 17 Si 0.741 3.259 18 H -0.184 1.184 19 H -0.199 1.199 20 H -0.186 1.186 21 C -0.260 4.260 22 C -0.016 4.016 23 H 0.058 0.942 24 H 0.103 0.897 25 H 0.058 0.942 26 H 0.080 0.920 27 H 0.074 0.926 28 H 0.096 0.904 29 H 0.109 0.891 30 H 0.246 0.754 31 H 0.121 0.879 32 H 0.140 0.860 33 H 0.100 0.900 34 H 0.118 0.882 35 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -9.389 3.654 -1.827 10.239 hybrid contribution 0.042 -0.699 1.085 1.292 sum -9.347 2.955 -0.742 9.831 Atomic orbital electron populations 1.22736 0.81306 1.02754 0.99747 1.87970 1.19395 1.27664 1.95356 1.22768 0.93585 0.85101 1.00844 1.21240 0.92938 0.99018 0.87158 1.55612 1.28182 1.71825 1.32348 1.01150 0.72051 0.73650 0.73784 1.93485 1.85901 1.74673 1.43694 1.93476 1.81870 1.34925 1.87425 1.29156 1.31199 1.07641 1.20217 1.20263 0.94673 0.97167 0.91695 1.21328 1.04862 0.94231 0.99888 1.17844 0.86278 0.91823 0.90425 1.19912 1.24980 1.08574 0.92951 0.89497 1.26124 0.95661 0.93682 0.99431 1.69810 1.28759 1.22699 1.17666 0.86198 0.81239 0.80174 0.78338 1.18366 1.19918 1.18577 1.21048 1.07686 0.98279 0.98982 1.20166 0.93986 0.91642 0.95849 0.94227 0.89662 0.94166 0.91998 0.92625 0.90368 0.89150 0.75435 0.87898 0.85988 0.89976 0.88220 0.87774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 101.05 1.11 1.40 16 2 O -0.39 -4.96 10.51 -35.23 -0.37 -5.33 16 3 C 0.06 0.62 6.13 37.16 0.23 0.85 16 4 C 0.12 1.73 6.61 -4.04 -0.03 1.71 16 5 N -1.12 -17.58 5.96 -10.61 -0.06 -17.65 16 6 S 2.70 52.55 5.73 -107.50 -0.62 51.93 16 7 O -0.99 -21.21 17.26 -57.17 -0.99 -22.20 16 8 O -0.99 -20.99 16.72 -57.17 -0.96 -21.94 16 9 C -0.79 -17.54 5.97 -39.29 -0.23 -17.78 16 10 C -0.02 -0.41 9.49 -39.66 -0.38 -0.79 16 11 C -0.18 -4.59 8.70 -38.88 -0.34 -4.92 16 12 C 0.14 3.58 5.57 -106.83 -0.60 2.99 16 13 C -0.44 -10.81 9.05 -37.74 -0.34 -11.15 16 14 H 0.09 2.03 7.91 -52.49 -0.41 1.62 16 15 C 0.07 1.69 5.14 -17.34 -0.09 1.60 16 16 N -0.77 -18.21 10.95 55.55 0.61 -17.60 16 17 Si 0.92 17.09 29.60 -169.99 -5.03 12.06 16 18 H -0.26 -4.83 7.11 56.52 0.40 -4.43 16 19 H -0.27 -4.96 7.11 56.52 0.40 -4.56 16 20 H -0.26 -4.81 7.11 56.52 0.40 -4.41 16 21 C -0.24 -5.77 9.80 -38.87 -0.38 -6.15 16 22 C 0.00 0.08 9.49 -39.66 -0.38 -0.29 16 23 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 24 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.09 1.19 7.75 -51.93 -0.40 0.79 16 30 H 0.41 5.77 8.51 -34.47 -0.29 5.48 16 31 H 0.10 2.18 7.59 -52.49 -0.40 1.78 16 32 H 0.12 3.08 6.16 -52.49 -0.32 2.76 16 33 H 0.29 6.16 8.30 -40.82 -0.34 5.82 16 34 H 0.10 2.21 8.06 -52.49 -0.42 1.79 16 35 H 0.10 2.17 7.60 -52.49 -0.40 1.77 16 LS Contribution 315.73 15.07 4.76 4.76 Total: -1.00 -30.60 315.73 -8.40 -39.00 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: -4.32 Total: 9.51 kcal Atomic # 6 Polarization: -31.12 SS G_CDS: -1.42 Total: -32.54 kcal Atomic # 7 Polarization: -35.79 SS G_CDS: 0.55 Total: -35.25 kcal Atomic # 8 Polarization: -47.16 SS G_CDS: -2.31 Total: -49.47 kcal Atomic # 14 Polarization: 17.09 SS G_CDS: -5.03 Total: 12.06 kcal Atomic # 16 Polarization: 52.55 SS G_CDS: -0.62 Total: 51.93 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -30.60 -8.40 -39.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092130849.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.891 kcal (2) G-P(sol) polarization free energy of solvation -30.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds