Wall clock time and date at job start Tue Mar 31 2020 05:39:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42903 * 113.99743 * 2 1 4 4 C 1.53005 * 109.47099 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.46690 * 65.00192 * 4 3 2 6 6 S 1.65600 * 119.99765 * 164.72873 * 5 4 3 7 7 O 1.42094 * 106.40512 * 178.53760 * 6 5 4 8 8 O 1.42106 * 106.40226 * 311.45618 * 6 5 4 9 9 C 1.76198 * 107.22067 * 64.99582 * 6 5 4 10 10 C 1.38640 * 119.75037 * 269.72949 * 9 6 5 11 11 C 1.37618 * 120.24754 * 179.72238 * 10 9 6 12 12 C 1.40708 * 119.74303 * 0.56852 * 11 10 9 13 13 C 1.41395 * 120.24350 * 179.68190 * 12 11 10 14 14 H 1.07999 * 120.00421 * 204.40366 * 13 12 11 15 15 C 1.39948 * 120.00045 * 24.41232 * 13 12 11 16 16 N 1.30828 * 119.99938 * 17.83864 * 15 13 12 17 17 Si 1.86804 * 120.00206 * 197.84763 * 15 13 12 18 18 H 1.48497 * 109.46953 * 59.99362 * 17 15 13 19 19 H 1.48494 * 109.47057 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.46965 * 299.99721 * 17 15 13 21 21 C 1.40718 * 119.51587 * 359.70656 * 12 11 10 22 22 C 1.37623 * 119.74191 * 359.97438 * 21 12 11 23 23 H 1.08997 * 109.47137 * 59.99803 * 1 2 3 24 24 H 1.08997 * 109.46851 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46838 * 299.99477 * 1 2 3 26 26 H 1.09004 * 109.47174 * 60.00524 * 3 2 1 27 27 H 1.08999 * 109.47572 * 300.00113 * 3 2 1 28 28 H 1.08997 * 109.46914 * 305.00306 * 4 3 2 29 29 H 1.08999 * 109.47332 * 184.99902 * 4 3 2 30 30 H 0.96997 * 120.00372 * 344.99577 * 5 4 3 31 31 H 1.08001 * 119.87510 * 359.97438 * 10 9 6 32 32 H 1.07997 * 120.12712 * 180.27635 * 11 10 9 33 33 H 0.96994 * 120.00050 * 180.02562 * 16 15 13 34 34 H 1.07995 * 120.13001 * 179.97438 * 21 12 11 35 35 H 1.07999 * 119.87507 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1848 -0.0006 5 7 3.9756 0.5646 -1.2528 6 16 5.5672 0.6466 -1.7027 7 8 5.6759 -0.0683 -2.9259 8 8 5.9550 2.0063 -1.5601 9 6 6.4936 -0.2625 -0.5111 10 6 6.9945 0.3828 0.6091 11 6 7.7146 -0.3185 1.5491 12 6 7.9519 -1.6930 1.3638 13 6 8.6961 -2.4224 2.3196 14 1 9.2109 -3.3259 2.0281 15 6 8.7654 -1.9736 3.6433 16 7 7.8907 -1.1078 4.0872 17 14 10.1070 -2.6105 4.7765 18 1 11.4366 -2.2674 4.2112 19 1 9.9624 -1.9848 6.1154 20 1 9.9887 -4.0853 4.9035 21 6 7.4435 -2.3363 0.2202 22 6 6.7205 -1.6165 -0.7034 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 1.6886 1.8464 0.8901 27 1 1.6886 1.8465 -0.8899 28 1 3.8515 0.5683 0.8409 29 1 3.9785 2.1766 0.0889 30 1 3.3341 0.1092 -1.8203 31 1 6.8155 1.4390 0.7465 32 1 8.1001 0.1852 2.4232 33 1 7.9390 -0.7965 5.0045 34 1 7.6201 -3.3908 0.0679 35 1 6.3297 -2.1080 -1.5821 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092130849.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:13 Heat of formation + Delta-G solvation = -136.070612 kcal Electronic energy + Delta-G solvation = -20250.573029 eV Core-core repulsion = 16953.061897 eV Total energy + Delta-G solvation = -3297.511133 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.087 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.37030 -39.02667 -38.11479 -36.77137 -35.92944 -35.77415 -32.05530 -31.27946 -30.05450 -27.60867 -27.03814 -23.58230 -23.23196 -22.92105 -20.41357 -19.41366 -18.68915 -18.19994 -17.44740 -17.42616 -17.16648 -16.42802 -16.01353 -15.82683 -15.36130 -15.02755 -14.94952 -14.37571 -14.08376 -13.93198 -13.69673 -13.53182 -13.10261 -13.01147 -12.90950 -12.87436 -12.82902 -12.57336 -12.40710 -12.06574 -12.00227 -11.53970 -11.34025 -11.21072 -10.59324 -10.35824 -9.77761 -9.53743 -8.86251 -6.64106 -0.26985 0.50104 1.06873 1.36354 1.45187 1.50455 2.12285 2.26557 2.53817 2.88261 2.96472 3.54046 3.62210 3.97270 4.22819 4.32150 4.34037 4.45320 4.52882 4.60280 4.64481 4.80161 4.87432 4.91421 4.94927 5.05858 5.13311 5.25573 5.53470 5.60661 5.77209 5.93820 6.16106 6.19876 6.28472 6.49734 6.69165 6.82133 8.08876 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.018395 B = 0.004762 C = 0.004182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.806176 B = 5878.915427 C = 6692.978713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.417 6.417 3 C 0.058 3.942 4 C 0.113 3.887 5 N -1.108 6.108 6 S 2.729 3.271 7 O -1.004 7.004 8 O -1.000 7.000 9 C -0.798 4.798 10 C -0.020 4.020 11 C -0.207 4.207 12 C 0.111 3.889 13 C -0.469 4.469 14 H 0.090 0.910 15 C 0.036 3.964 16 N -0.795 5.795 17 Si 0.991 3.009 18 H -0.259 1.259 19 H -0.262 1.262 20 H -0.255 1.255 21 C -0.259 4.259 22 C -0.003 4.003 23 H 0.054 0.946 24 H 0.090 0.910 25 H 0.052 0.948 26 H 0.085 0.915 27 H 0.074 0.926 28 H 0.061 0.939 29 H 0.101 0.899 30 H 0.423 0.577 31 H 0.119 0.881 32 H 0.112 0.888 33 H 0.299 0.701 34 H 0.109 0.891 35 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.770 3.485 -1.231 11.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.336 6.336 3 C -0.020 4.020 4 C -0.013 4.013 5 N -0.869 5.869 6 S 2.824 3.176 7 O -0.994 6.994 8 O -0.990 6.990 9 C -0.890 4.890 10 C -0.040 4.040 11 C -0.228 4.228 12 C 0.108 3.892 13 C -0.496 4.496 14 H 0.108 0.892 15 C -0.184 4.184 16 N -0.418 5.418 17 Si 0.810 3.190 18 H -0.183 1.183 19 H -0.186 1.186 20 H -0.179 1.179 21 C -0.280 4.280 22 C -0.023 4.023 23 H 0.073 0.927 24 H 0.108 0.892 25 H 0.071 0.929 26 H 0.103 0.897 27 H 0.093 0.907 28 H 0.079 0.921 29 H 0.119 0.881 30 H 0.259 0.741 31 H 0.137 0.863 32 H 0.130 0.870 33 H 0.110 0.890 34 H 0.128 0.872 35 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -10.341 4.018 -1.638 11.215 hybrid contribution 0.196 -0.764 0.963 1.245 sum -10.146 3.254 -0.674 10.676 Atomic orbital electron populations 1.22921 0.79448 1.03615 1.01085 1.87916 1.21514 1.28557 1.95659 1.22794 0.91258 0.85080 1.02866 1.21474 0.95471 0.98920 0.85480 1.55228 1.26600 1.71871 1.33203 1.00188 0.72352 0.72603 0.72442 1.93456 1.86592 1.75003 1.44370 1.93456 1.82749 1.35446 1.87396 1.29676 1.31354 1.07777 1.20219 1.20485 0.93931 0.97965 0.91587 1.21361 1.06394 0.94503 1.00501 1.18200 0.87179 0.92400 0.91468 1.20210 1.25993 1.09296 0.94065 0.89168 1.26987 0.97473 0.93600 1.00302 1.69836 1.29964 1.23343 1.18639 0.85101 0.77717 0.79737 0.76408 1.18322 1.18640 1.17923 1.21275 1.08337 0.99058 0.99304 1.20457 0.93510 0.92118 0.96191 0.92732 0.89182 0.92937 0.89725 0.90750 0.92082 0.88145 0.74112 0.86280 0.86972 0.88986 0.87245 0.85867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 113.37 1.25 1.65 16 2 O -0.42 -9.91 10.51 -148.98 -1.57 -11.47 16 3 C 0.06 1.17 6.13 71.98 0.44 1.61 16 4 C 0.11 2.99 6.61 86.38 0.57 3.56 16 5 N -1.11 -32.82 5.96 -187.48 -1.12 -33.94 16 6 S 2.73 103.03 5.73 -56.49 -0.32 102.71 16 7 O -1.00 -41.70 17.26 -128.00 -2.21 -43.91 16 8 O -1.00 -41.11 16.72 -128.00 -2.14 -43.25 16 9 C -0.80 -35.48 5.97 22.46 0.13 -35.34 16 10 C -0.02 -0.93 9.49 22.22 0.21 -0.72 16 11 C -0.21 -10.72 8.70 22.73 0.20 -10.52 16 12 C 0.11 5.86 5.57 -21.29 -0.12 5.74 16 13 C -0.47 -23.77 9.05 23.46 0.21 -23.56 16 14 H 0.09 4.33 7.91 -2.91 -0.02 4.30 16 15 C 0.04 1.67 5.14 85.26 0.44 2.11 16 16 N -0.80 -38.27 10.95 21.83 0.24 -38.03 16 17 Si 0.99 34.71 29.60 68.60 2.03 36.74 16 18 H -0.26 -8.99 7.11 99.48 0.71 -8.29 16 19 H -0.26 -8.59 7.11 99.48 0.71 -7.88 16 20 H -0.26 -8.63 7.11 99.48 0.71 -7.92 16 21 C -0.26 -12.77 9.80 22.73 0.22 -12.55 16 22 C 0.00 -0.14 9.49 22.22 0.21 0.07 16 23 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 24 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 25 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.10 2.46 7.75 -2.39 -0.02 2.44 16 30 H 0.42 10.96 8.51 -96.75 -0.82 10.14 16 31 H 0.12 5.05 7.59 -2.91 -0.02 5.02 16 32 H 0.11 5.89 6.16 -2.91 -0.02 5.87 16 33 H 0.30 12.76 8.30 -92.71 -0.77 11.99 16 34 H 0.11 4.97 8.06 -2.91 -0.02 4.95 16 35 H 0.12 5.05 7.60 -2.91 -0.02 5.03 16 Total: -1.00 -65.44 315.73 -1.03 -66.47 By element: Atomic # 1 Polarization: 32.34 SS G_CDS: 0.28 Total: 32.63 kcal Atomic # 6 Polarization: -71.71 SS G_CDS: 3.77 Total: -67.95 kcal Atomic # 7 Polarization: -71.10 SS G_CDS: -0.88 Total: -71.97 kcal Atomic # 8 Polarization: -92.71 SS G_CDS: -5.91 Total: -98.62 kcal Atomic # 14 Polarization: 34.71 SS G_CDS: 2.03 Total: 36.74 kcal Atomic # 16 Polarization: 103.03 SS G_CDS: -0.32 Total: 102.71 kcal Total: -65.44 -1.03 -66.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092130849.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.599 kcal (2) G-P(sol) polarization free energy of solvation -65.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds