Wall clock time and date at job start Tue Mar 31 2020 05:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.47007 * 2 1 4 4 C 1.53000 * 109.46811 * 240.00461 * 2 1 3 5 5 O 1.42899 * 109.46952 * 304.99844 * 4 2 1 6 6 N 1.46499 * 109.46976 * 120.00623 * 2 1 3 7 7 S 1.65601 * 119.99521 * 264.99437 * 6 2 1 8 8 O 1.42106 * 106.39977 * 178.54276 * 7 6 2 9 9 O 1.42096 * 106.40678 * 311.45974 * 7 6 2 10 10 C 1.76194 * 107.22070 * 65.00547 * 7 6 2 11 11 C 1.38632 * 119.75097 * 269.72763 * 10 7 6 12 12 C 1.37622 * 120.25006 * 179.71944 * 11 10 7 13 13 C 1.40708 * 119.74302 * 0.56757 * 12 11 10 14 14 C 1.41398 * 120.24477 * 179.68534 * 13 12 11 15 15 H 1.07997 * 120.00058 * 24.40463 * 14 13 12 16 16 C 1.39953 * 119.99851 * 204.41484 * 14 13 12 17 17 N 1.30818 * 120.00122 * 17.84913 * 16 14 13 18 18 Si 1.86797 * 119.99564 * 197.85151 * 16 14 13 19 19 H 1.48502 * 109.47435 * 59.99904 * 18 16 14 20 20 H 1.48496 * 109.47033 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47270 * 299.99662 * 18 16 14 22 22 C 1.40718 * 119.51332 * 359.70475 * 13 12 11 23 23 C 1.37615 * 119.74453 * 359.97438 * 22 13 12 24 24 H 1.09000 * 109.47440 * 59.99282 * 1 2 3 25 25 H 1.09000 * 109.47007 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46514 * 299.99509 * 1 2 3 27 27 H 1.08994 * 109.47076 * 185.00098 * 4 2 1 28 28 H 1.08998 * 109.47525 * 64.99585 * 4 2 1 29 29 H 0.96702 * 113.99974 * 180.02562 * 5 4 2 30 30 H 0.96998 * 120.00278 * 85.00418 * 6 2 1 31 31 H 1.08001 * 119.87574 * 359.97438 * 11 10 7 32 32 H 1.07998 * 120.12707 * 180.27543 * 12 11 10 33 33 H 0.96999 * 119.99550 * 180.02562 * 17 16 14 34 34 H 1.07998 * 120.12458 * 179.97438 * 22 13 12 35 35 H 1.08002 * 119.87770 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 1.4701 -2.0302 -1.3095 6 7 2.0183 -0.6907 1.1961 7 16 2.4123 0.1770 2.5504 8 8 2.8125 -0.7700 3.5314 9 8 3.2438 1.2441 2.1156 10 6 0.9277 0.9146 3.1475 11 6 0.5586 2.1748 2.7031 12 6 -0.6018 2.7581 3.1583 13 6 -1.4085 2.0754 4.0873 14 6 -2.5995 2.6676 4.5671 15 1 -3.1047 3.4184 3.9777 16 6 -3.1234 2.2810 5.8060 17 7 -2.3663 1.6548 6.6697 18 14 -4.9038 2.6591 6.2260 19 1 -5.7960 2.0011 5.2380 20 1 -5.2106 2.1486 7.5863 21 1 -5.1204 4.1277 6.1874 22 6 -1.0210 0.7991 4.5358 23 6 0.1401 0.2323 4.0620 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3632 0.5138 0.8901 27 1 3.1262 -0.7994 -1.2057 28 1 1.7515 -0.1582 -2.1370 29 1 1.7504 -2.5463 -2.0778 30 1 2.1110 -1.6563 1.1947 31 1 1.1819 2.6990 1.9938 32 1 -0.8897 3.7381 2.8074 33 1 -2.7296 1.3866 7.5281 34 1 -1.6325 0.2665 5.2490 35 1 0.4397 -0.7469 4.4050 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092131294.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:37 Heat of formation + Delta-G solvation = -121.452084 kcal Electronic energy + Delta-G solvation = -20675.404461 eV Core-core repulsion = 17378.527236 eV Total energy + Delta-G solvation = -3296.877226 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.087 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -37.86436 -37.53732 -36.43778 -35.09710 -34.80583 -34.01681 -30.25039 -29.75515 -29.42088 -26.31317 -25.75617 -21.48454 -21.23886 -20.98655 -19.02304 -17.68638 -17.56507 -16.87279 -16.55769 -15.90987 -15.42209 -14.63649 -14.50609 -14.09691 -13.62534 -13.39029 -13.19185 -12.97720 -12.45250 -12.36180 -12.17356 -11.75806 -11.69161 -11.43387 -11.39373 -11.26771 -11.22986 -11.13209 -10.88485 -10.62594 -10.43450 -10.11765 -9.74682 -9.63724 -9.45524 -9.03241 -7.93256 -7.67596 -7.12021 -4.78207 1.30169 2.28379 2.88764 2.90558 2.93561 2.95940 3.66978 3.73891 4.18864 4.27767 4.56776 4.90875 5.03346 5.22241 5.31812 5.40107 5.51691 5.68516 5.81913 6.07485 6.15363 6.17637 6.43024 6.68376 6.70127 6.72979 6.94531 7.06525 7.34982 7.39647 7.45343 7.52618 7.66381 7.78610 7.98732 8.33990 8.53150 8.67039 9.79497 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.024950 B = 0.004770 C = 0.004419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.982798 B = 5868.122012 C = 6335.306831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.155 3.845 3 H 0.099 0.901 4 C 0.072 3.928 5 O -0.566 6.566 6 N -1.118 6.118 7 S 2.692 3.308 8 O -0.985 6.985 9 O -0.989 6.989 10 C -0.785 4.785 11 C 0.001 3.999 12 C -0.238 4.238 13 C 0.140 3.860 14 C -0.437 4.437 15 H 0.087 0.913 16 C 0.073 3.927 17 N -0.765 5.765 18 Si 0.917 3.083 19 H -0.260 1.260 20 H -0.274 1.274 21 H -0.261 1.261 22 C -0.184 4.184 23 C -0.012 4.012 24 H 0.057 0.943 25 H 0.067 0.933 26 H 0.076 0.924 27 H 0.051 0.949 28 H 0.055 0.945 29 H 0.376 0.624 30 H 0.414 0.586 31 H 0.103 0.897 32 H 0.099 0.901 33 H 0.290 0.710 34 H 0.122 0.878 35 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.069 -3.904 -11.191 12.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.047 3.953 3 H 0.116 0.884 4 C -0.007 4.007 5 O -0.371 6.371 6 N -0.874 5.874 7 S 2.791 3.209 8 O -0.976 6.976 9 O -0.979 6.979 10 C -0.881 4.881 11 C -0.019 4.019 12 C -0.259 4.259 13 C 0.136 3.864 14 C -0.464 4.464 15 H 0.105 0.895 16 C -0.150 4.150 17 N -0.387 5.387 18 Si 0.740 3.260 19 H -0.184 1.184 20 H -0.199 1.199 21 H -0.186 1.186 22 C -0.204 4.204 23 C -0.033 4.033 24 H 0.076 0.924 25 H 0.086 0.914 26 H 0.095 0.905 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.222 0.778 30 H 0.247 0.753 31 H 0.121 0.879 32 H 0.117 0.883 33 H 0.101 0.899 34 H 0.139 0.861 35 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 2.680 -3.545 -10.048 10.987 hybrid contribution -1.207 -0.221 -0.181 1.241 sum 1.473 -3.765 -10.229 10.999 Atomic orbital electron populations 1.22281 0.94521 1.03348 1.02945 1.20767 0.95247 0.95617 0.83663 0.88355 1.22470 0.96773 0.84128 0.97366 1.86513 1.72895 1.27326 1.50394 1.55728 1.84032 1.19603 1.28028 1.01229 0.74918 0.72847 0.71950 1.93495 1.82722 1.62966 1.58391 1.93472 1.66254 1.55990 1.82171 1.29119 1.26816 1.09543 1.22633 1.20133 0.94727 0.92029 0.95034 1.21002 0.97430 1.00202 1.07232 1.17836 0.90352 0.90310 0.87855 1.19902 1.06092 1.18675 1.01750 0.89519 1.26134 1.00249 0.92849 0.95757 1.69817 1.36874 1.26031 1.05991 0.86201 0.81121 0.80171 0.78468 1.18391 1.19916 1.18577 1.21333 0.98181 0.96276 1.04643 1.20241 0.93392 0.96949 0.92678 0.92370 0.91426 0.90522 0.93043 0.92635 0.77775 0.75296 0.87943 0.88260 0.89899 0.86055 0.87938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.44 9.32 37.16 0.35 -2.10 16 2 C 0.15 2.10 3.31 -67.93 -0.23 1.88 16 3 H 0.10 1.32 7.50 -51.93 -0.39 0.94 16 4 C 0.07 0.74 6.84 37.16 0.25 1.00 16 5 O -0.57 -5.77 12.49 -35.23 -0.44 -6.21 16 6 N -1.12 -17.22 5.46 -4.89 -0.03 -17.25 16 7 S 2.69 52.60 5.71 -107.50 -0.61 51.98 16 8 O -0.99 -21.73 17.26 -57.17 -0.99 -22.72 16 9 O -0.99 -20.93 16.59 -57.17 -0.95 -21.88 16 10 C -0.79 -17.20 5.08 -39.29 -0.20 -17.40 16 11 C 0.00 0.02 8.57 -39.66 -0.34 -0.32 16 12 C -0.24 -5.54 9.80 -38.87 -0.38 -5.92 16 13 C 0.14 3.53 5.58 -106.83 -0.60 2.94 16 14 C -0.44 -10.69 9.05 -37.74 -0.34 -11.03 16 15 H 0.09 1.99 7.91 -52.49 -0.41 1.58 16 16 C 0.07 1.68 5.14 -17.34 -0.09 1.59 16 17 N -0.76 -18.48 10.95 55.55 0.61 -17.87 16 18 Si 0.92 17.07 29.59 -169.99 -5.03 12.04 16 19 H -0.26 -4.80 7.11 56.52 0.40 -4.39 16 20 H -0.27 -4.99 7.11 56.52 0.40 -4.59 16 21 H -0.26 -4.80 7.11 56.52 0.40 -4.40 16 22 C -0.18 -4.62 8.70 -38.87 -0.34 -4.95 16 23 C -0.01 -0.29 9.49 -39.66 -0.38 -0.66 16 24 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.07 0.98 7.56 -51.93 -0.39 0.59 16 26 H 0.08 1.28 6.18 -51.93 -0.32 0.96 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.38 2.04 9.12 45.56 0.42 2.46 16 30 H 0.41 5.80 8.58 -34.47 -0.30 5.50 16 31 H 0.10 2.00 7.59 -52.49 -0.40 1.61 16 32 H 0.10 2.13 8.06 -52.49 -0.42 1.70 16 33 H 0.29 6.30 8.30 -40.82 -0.34 5.96 16 34 H 0.12 3.09 6.15 -52.49 -0.32 2.77 16 35 H 0.10 2.26 7.60 -52.49 -0.40 1.86 16 LS Contribution 309.23 15.07 4.66 4.66 Total: -1.00 -30.91 309.23 -8.41 -39.32 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: -3.34 Total: 12.92 kcal Atomic # 6 Polarization: -32.71 SS G_CDS: -2.29 Total: -34.99 kcal Atomic # 7 Polarization: -35.70 SS G_CDS: 0.58 Total: -35.12 kcal Atomic # 8 Polarization: -48.44 SS G_CDS: -2.38 Total: -50.81 kcal Atomic # 14 Polarization: 17.07 SS G_CDS: -5.03 Total: 12.04 kcal Atomic # 16 Polarization: 52.60 SS G_CDS: -0.61 Total: 51.98 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.91 -8.41 -39.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092131294.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.129 kcal (2) G-P(sol) polarization free energy of solvation -30.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds