Wall clock time and date at job start Tue Mar 31 2020 05:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.47007 * 2 1 4 4 C 1.53000 * 109.46811 * 240.00461 * 2 1 3 5 5 O 1.42899 * 109.46952 * 304.99844 * 4 2 1 6 6 N 1.46499 * 109.46976 * 120.00623 * 2 1 3 7 7 S 1.65601 * 119.99521 * 264.99437 * 6 2 1 8 8 O 1.42106 * 106.39977 * 178.54276 * 7 6 2 9 9 O 1.42096 * 106.40678 * 311.45974 * 7 6 2 10 10 C 1.76194 * 107.22070 * 65.00547 * 7 6 2 11 11 C 1.38632 * 119.75097 * 269.72763 * 10 7 6 12 12 C 1.37622 * 120.25006 * 179.71944 * 11 10 7 13 13 C 1.40708 * 119.74302 * 0.56757 * 12 11 10 14 14 C 1.41398 * 120.24477 * 179.68534 * 13 12 11 15 15 H 1.07997 * 120.00058 * 24.40463 * 14 13 12 16 16 C 1.39953 * 119.99851 * 204.41484 * 14 13 12 17 17 N 1.30818 * 120.00122 * 17.84913 * 16 14 13 18 18 Si 1.86797 * 119.99564 * 197.85151 * 16 14 13 19 19 H 1.48502 * 109.47435 * 59.99904 * 18 16 14 20 20 H 1.48496 * 109.47033 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47270 * 299.99662 * 18 16 14 22 22 C 1.40718 * 119.51332 * 359.70475 * 13 12 11 23 23 C 1.37615 * 119.74453 * 359.97438 * 22 13 12 24 24 H 1.09000 * 109.47440 * 59.99282 * 1 2 3 25 25 H 1.09000 * 109.47007 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46514 * 299.99509 * 1 2 3 27 27 H 1.08994 * 109.47076 * 185.00098 * 4 2 1 28 28 H 1.08998 * 109.47525 * 64.99585 * 4 2 1 29 29 H 0.96702 * 113.99974 * 180.02562 * 5 4 2 30 30 H 0.96998 * 120.00278 * 85.00418 * 6 2 1 31 31 H 1.08001 * 119.87574 * 359.97438 * 11 10 7 32 32 H 1.07998 * 120.12707 * 180.27543 * 12 11 10 33 33 H 0.96999 * 119.99550 * 180.02562 * 17 16 14 34 34 H 1.07998 * 120.12458 * 179.97438 * 22 13 12 35 35 H 1.08002 * 119.87770 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 1.4701 -2.0302 -1.3095 6 7 2.0183 -0.6907 1.1961 7 16 2.4123 0.1770 2.5504 8 8 2.8125 -0.7700 3.5314 9 8 3.2438 1.2441 2.1156 10 6 0.9277 0.9146 3.1475 11 6 0.5586 2.1748 2.7031 12 6 -0.6018 2.7581 3.1583 13 6 -1.4085 2.0754 4.0873 14 6 -2.5995 2.6676 4.5671 15 1 -3.1047 3.4184 3.9777 16 6 -3.1234 2.2810 5.8060 17 7 -2.3663 1.6548 6.6697 18 14 -4.9038 2.6591 6.2260 19 1 -5.7960 2.0011 5.2380 20 1 -5.2106 2.1486 7.5863 21 1 -5.1204 4.1277 6.1874 22 6 -1.0210 0.7991 4.5358 23 6 0.1401 0.2323 4.0620 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3632 0.5138 0.8901 27 1 3.1262 -0.7994 -1.2057 28 1 1.7515 -0.1582 -2.1370 29 1 1.7504 -2.5463 -2.0778 30 1 2.1110 -1.6563 1.1947 31 1 1.1819 2.6990 1.9938 32 1 -0.8897 3.7381 2.8074 33 1 -2.7296 1.3866 7.5281 34 1 -1.6325 0.2665 5.2490 35 1 0.4397 -0.7469 4.4050 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092131294.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:37 Heat of formation + Delta-G solvation = -145.815749 kcal Electronic energy + Delta-G solvation = -20676.460949 eV Core-core repulsion = 17378.527236 eV Total energy + Delta-G solvation = -3297.933714 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.087 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.39680 -38.76303 -38.07674 -36.78507 -35.88710 -35.71945 -32.05895 -31.30956 -30.88298 -27.64250 -27.15464 -23.27265 -22.97151 -22.15172 -20.47628 -19.41517 -18.89646 -18.18843 -17.99286 -17.30233 -16.98287 -16.12992 -15.81349 -15.38219 -15.20806 -14.92246 -14.63936 -14.16801 -14.09937 -13.96562 -13.62330 -13.30652 -13.11402 -13.03192 -13.01267 -12.90217 -12.85388 -12.54546 -12.33336 -12.02699 -11.76759 -11.52842 -11.35583 -11.17427 -10.82574 -10.37512 -9.75682 -9.51720 -8.85972 -6.63464 -0.28214 0.50920 1.08022 1.35723 1.44705 1.50300 2.11340 2.25586 2.55058 2.95066 3.44369 3.54526 3.64387 3.91829 4.20234 4.31809 4.34399 4.45972 4.51901 4.69522 4.83952 4.88931 4.95567 5.04068 5.12135 5.25694 5.31289 5.54005 5.54117 5.61531 5.78590 5.94579 6.17069 6.22482 6.50843 6.69854 6.83019 7.02596 8.09047 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.024950 B = 0.004770 C = 0.004419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.982798 B = 5868.122012 C = 6335.306831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.141 3.859 3 H 0.102 0.898 4 C 0.078 3.922 5 O -0.585 6.585 6 N -1.103 6.103 7 S 2.722 3.278 8 O -1.010 7.010 9 O -1.000 7.000 10 C -0.791 4.791 11 C 0.003 3.997 12 C -0.253 4.253 13 C 0.113 3.887 14 C -0.468 4.468 15 H 0.093 0.907 16 C 0.034 3.966 17 N -0.801 5.801 18 Si 0.992 3.008 19 H -0.256 1.256 20 H -0.266 1.266 21 H -0.254 1.254 22 C -0.208 4.208 23 C -0.020 4.020 24 H 0.080 0.920 25 H 0.061 0.939 26 H 0.046 0.954 27 H 0.062 0.938 28 H 0.083 0.917 29 H 0.397 0.603 30 H 0.423 0.577 31 H 0.127 0.873 32 H 0.113 0.887 33 H 0.297 0.703 34 H 0.108 0.892 35 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.052 -3.896 -12.898 13.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.035 3.965 3 H 0.120 0.880 4 C -0.002 4.002 5 O -0.393 6.393 6 N -0.863 5.863 7 S 2.818 3.182 8 O -1.001 7.001 9 O -0.990 6.990 10 C -0.885 4.885 11 C -0.017 4.017 12 C -0.274 4.274 13 C 0.109 3.891 14 C -0.494 4.494 15 H 0.111 0.889 16 C -0.185 4.185 17 N -0.424 5.424 18 Si 0.811 3.189 19 H -0.180 1.180 20 H -0.191 1.191 21 H -0.178 1.178 22 C -0.229 4.229 23 C -0.040 4.040 24 H 0.099 0.901 25 H 0.080 0.920 26 H 0.065 0.935 27 H 0.080 0.920 28 H 0.101 0.899 29 H 0.247 0.753 30 H 0.258 0.742 31 H 0.145 0.855 32 H 0.131 0.869 33 H 0.109 0.891 34 H 0.126 0.874 35 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 2.658 -3.536 -11.761 12.566 hybrid contribution -1.089 -0.292 0.233 1.152 sum 1.569 -3.829 -11.528 12.248 Atomic orbital electron populations 1.22227 0.95116 1.02808 1.02593 1.21105 0.94839 0.96369 0.84231 0.88031 1.22396 0.97169 0.84363 0.96232 1.86455 1.73267 1.27529 1.52092 1.55345 1.83758 1.19937 1.27268 1.00335 0.73627 0.72260 0.71997 1.93457 1.82896 1.63449 1.60286 1.93454 1.66181 1.56929 1.82426 1.29572 1.27150 1.09796 1.21944 1.20410 0.94429 0.91974 0.94859 1.21235 0.97931 1.00876 1.07308 1.18185 0.91342 0.90703 0.88862 1.20213 1.06697 1.19719 1.02819 0.88855 1.27038 1.04394 0.92103 0.95003 1.69866 1.38916 1.26904 1.06668 0.85090 0.75214 0.80193 0.78390 1.18033 1.19063 1.17790 1.21334 0.99178 0.96855 1.05511 1.20406 0.93239 0.97401 0.92949 0.90081 0.92018 0.93517 0.91995 0.89861 0.75263 0.74161 0.85488 0.86940 0.89137 0.87427 0.87273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.52 9.32 71.98 0.67 -3.85 16 2 C 0.14 3.50 3.31 44.99 0.15 3.65 16 3 H 0.10 2.47 7.50 -2.39 -0.02 2.45 16 4 C 0.08 1.33 6.84 71.98 0.49 1.82 16 5 O -0.58 -10.11 12.49 -148.98 -1.86 -11.97 16 6 N -1.10 -32.07 5.46 -169.38 -0.93 -33.00 16 7 S 2.72 103.54 5.71 -56.49 -0.32 103.22 16 8 O -1.01 -43.93 17.26 -128.00 -2.21 -46.14 16 9 O -1.00 -40.63 16.59 -128.00 -2.12 -42.75 16 10 C -0.79 -34.68 5.08 22.46 0.11 -34.57 16 11 C 0.00 0.13 8.57 22.22 0.19 0.32 16 12 C -0.25 -11.92 9.80 22.73 0.22 -11.70 16 13 C 0.11 5.84 5.58 -21.29 -0.12 5.73 16 14 C -0.47 -23.42 9.05 23.46 0.21 -23.21 16 15 H 0.09 4.36 7.91 -2.91 -0.02 4.34 16 16 C 0.03 1.58 5.14 85.26 0.44 2.02 16 17 N -0.80 -39.71 10.95 21.83 0.24 -39.47 16 18 Si 0.99 34.89 29.59 68.60 2.03 36.92 16 19 H -0.26 -8.80 7.11 99.48 0.71 -8.09 16 20 H -0.27 -8.92 7.11 99.48 0.71 -8.21 16 21 H -0.25 -8.57 7.11 99.48 0.71 -7.86 16 22 C -0.21 -10.88 8.70 22.73 0.20 -10.68 16 23 C -0.02 -0.95 9.49 22.22 0.21 -0.74 16 24 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 25 H 0.06 1.71 7.56 -2.39 -0.02 1.69 16 26 H 0.05 1.53 6.18 -2.38 -0.01 1.51 16 27 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.08 1.00 8.14 -2.39 -0.02 0.99 16 29 H 0.40 2.99 9.12 -74.06 -0.68 2.31 16 30 H 0.42 11.06 8.58 -96.75 -0.83 10.23 16 31 H 0.13 4.79 7.59 -2.91 -0.02 4.77 16 32 H 0.11 4.84 8.06 -2.91 -0.02 4.81 16 33 H 0.30 13.21 8.30 -92.71 -0.77 12.44 16 34 H 0.11 5.79 6.15 -2.91 -0.02 5.77 16 35 H 0.11 4.94 7.60 -2.91 -0.02 4.92 16 Total: -1.00 -66.90 309.23 -2.76 -69.66 By element: Atomic # 1 Polarization: 35.10 SS G_CDS: -0.37 Total: 34.73 kcal Atomic # 6 Polarization: -73.98 SS G_CDS: 2.78 Total: -71.20 kcal Atomic # 7 Polarization: -71.78 SS G_CDS: -0.69 Total: -72.47 kcal Atomic # 8 Polarization: -94.67 SS G_CDS: -6.19 Total: -100.86 kcal Atomic # 14 Polarization: 34.89 SS G_CDS: 2.03 Total: 36.92 kcal Atomic # 16 Polarization: 103.54 SS G_CDS: -0.32 Total: 103.22 kcal Total: -66.90 -2.76 -69.66 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092131294.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.153 kcal (2) G-P(sol) polarization free energy of solvation -66.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds