Wall clock time and date at job start Tue Mar 31 2020 05:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46501 * 120.00241 * 2 1 4 4 C 1.52994 * 109.47094 * 84.99729 * 3 2 1 5 5 O 1.42898 * 109.47303 * 65.00361 * 4 3 2 6 6 S 1.65602 * 120.00032 * 179.97438 * 2 1 3 7 7 O 1.42102 * 106.40349 * 203.54062 * 6 2 1 8 8 O 1.42104 * 106.40048 * 336.46033 * 6 2 1 9 9 C 1.76200 * 107.21886 * 89.99842 * 6 2 1 10 10 C 1.38630 * 119.75251 * 269.73063 * 9 6 2 11 11 C 1.37623 * 120.24848 * 179.72100 * 10 9 6 12 12 C 1.40712 * 119.74206 * 0.56873 * 11 10 9 13 13 C 1.41402 * 120.24080 * 179.68281 * 12 11 10 14 14 H 1.08001 * 119.99771 * 155.30837 * 13 12 11 15 15 C 1.39940 * 120.00003 * 335.31498 * 13 12 11 16 16 N 1.30829 * 119.99800 * 342.22687 * 15 13 12 17 17 Si 1.86801 * 120.00046 * 162.23706 * 15 13 12 18 18 H 1.48495 * 109.47447 * 94.65741 * 17 15 13 19 19 H 1.48502 * 109.46754 * 214.66313 * 17 15 13 20 20 H 1.48506 * 109.46914 * 334.65726 * 17 15 13 21 21 C 1.40709 * 119.51492 * 359.70253 * 12 11 10 22 22 C 1.37619 * 119.74597 * 0.02562 * 21 12 11 23 23 H 1.09002 * 109.47174 * 270.00402 * 1 2 3 24 24 H 1.08998 * 109.47137 * 29.99971 * 1 2 3 25 25 H 1.09004 * 109.47127 * 150.00023 * 1 2 3 26 26 H 1.08995 * 109.47261 * 204.99836 * 3 2 1 27 27 H 1.08997 * 109.46835 * 325.00049 * 3 2 1 28 28 H 1.09006 * 109.47222 * 185.00274 * 4 3 2 29 29 H 1.09001 * 109.47254 * 305.00359 * 4 3 2 30 30 H 0.96704 * 114.00402 * 179.97438 * 5 4 3 31 31 H 1.07998 * 119.87395 * 359.97438 * 10 9 6 32 32 H 1.07994 * 120.12388 * 180.27918 * 11 10 9 33 33 H 0.97001 * 119.99569 * 180.02562 * 16 15 13 34 34 H 1.07998 * 120.12893 * 179.97438 * 21 12 11 35 35 H 1.08005 * 119.88006 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.3436 1.7732 1.4370 5 8 3.1598 0.8656 2.1799 6 16 2.2930 -1.4341 0.0006 7 8 3.5760 -1.1566 0.5450 8 8 1.4113 -2.4063 0.5455 9 6 2.5538 -1.8866 -1.6822 10 6 1.6160 -2.6698 -2.3373 11 6 1.8066 -3.0244 -3.6533 12 6 2.9645 -2.5989 -4.3303 13 6 3.1742 -2.9628 -5.6805 14 1 3.8036 -2.3538 -6.3123 15 6 2.5660 -4.1120 -6.1980 16 7 2.1013 -5.0277 -5.3874 17 14 2.4178 -4.3385 -8.0463 18 1 3.5636 -5.1440 -8.5397 19 1 1.1475 -5.0415 -8.3585 20 1 2.4244 -3.0100 -8.7099 21 6 3.9123 -1.8091 -3.6537 22 6 3.6982 -1.4618 -2.3393 23 1 -0.3633 0.0001 1.0277 24 1 -0.3633 0.8900 -0.5138 25 1 -0.3633 -0.8900 -0.5138 26 1 3.1858 1.1177 -0.4343 27 1 1.6502 2.0042 -0.5894 28 1 2.8094 2.7587 1.4305 29 1 1.3594 1.8396 1.9006 30 1 3.2959 1.1233 3.1020 31 1 0.7306 -2.9994 -1.8141 32 1 1.0725 -3.6308 -4.1630 33 1 1.6801 -5.8244 -5.7461 34 1 4.8047 -1.4775 -4.1635 35 1 4.4245 -0.8560 -1.8178 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092131295.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:41 Heat of formation + Delta-G solvation = -107.083971 kcal Electronic energy + Delta-G solvation = -20723.852297 eV Core-core repulsion = 17427.598119 eV Total energy + Delta-G solvation = -3296.254178 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.087 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -37.52282 -37.39798 -36.30147 -35.10370 -34.86931 -33.99078 -30.20635 -29.47384 -29.36859 -25.81035 -25.59781 -22.18648 -21.40594 -21.07645 -18.29264 -17.60689 -17.48408 -16.90072 -16.50825 -15.61227 -15.44793 -14.64958 -14.22353 -14.05061 -13.73828 -13.29842 -13.14005 -12.96280 -12.58915 -12.33903 -12.15299 -11.82430 -11.69350 -11.56481 -11.35918 -11.23501 -11.08085 -10.97796 -10.84831 -10.81106 -10.38609 -9.90122 -9.70616 -9.55272 -9.43063 -8.64507 -7.90246 -7.66112 -7.10058 -4.75832 1.35494 2.31619 2.89414 2.91030 2.95780 2.97595 3.67732 3.71210 4.27009 4.39748 4.74294 5.04184 5.15665 5.20419 5.35338 5.40887 5.44762 5.69010 5.71706 5.84794 5.94785 6.11295 6.15857 6.30658 6.70731 6.73026 6.87109 7.07007 7.10943 7.38350 7.46993 7.68034 7.78924 7.80720 8.01095 8.35839 8.55222 8.69354 9.81730 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.035468 B = 0.004384 C = 0.004292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.254026 B = 6385.262059 C = 6522.394082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -1.004 6.004 3 C 0.128 3.872 4 C 0.054 3.946 5 O -0.548 6.548 6 S 2.694 3.306 7 O -0.958 6.958 8 O -0.986 6.986 9 C -0.791 4.791 10 C -0.017 4.017 11 C -0.184 4.184 12 C 0.139 3.861 13 C -0.439 4.439 14 H 0.087 0.913 15 C 0.073 3.927 16 N -0.767 5.767 17 Si 0.916 3.084 18 H -0.266 1.266 19 H -0.271 1.271 20 H -0.257 1.257 21 C -0.240 4.240 22 C 0.001 3.999 23 H 0.048 0.952 24 H 0.065 0.935 25 H 0.071 0.929 26 H 0.089 0.911 27 H 0.087 0.913 28 H 0.050 0.950 29 H 0.044 0.956 30 H 0.370 0.630 31 H 0.102 0.898 32 H 0.122 0.878 33 H 0.289 0.711 34 H 0.100 0.900 35 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.409 10.532 5.681 12.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.839 5.839 3 C 0.002 3.998 4 C -0.026 4.026 5 O -0.352 6.352 6 S 2.792 3.208 7 O -0.948 6.948 8 O -0.977 6.977 9 C -0.886 4.886 10 C -0.037 4.037 11 C -0.204 4.204 12 C 0.136 3.864 13 C -0.466 4.466 14 H 0.105 0.895 15 C -0.150 4.150 16 N -0.389 5.389 17 Si 0.739 3.261 18 H -0.191 1.191 19 H -0.196 1.196 20 H -0.180 1.180 21 C -0.260 4.260 22 C -0.019 4.019 23 H 0.067 0.933 24 H 0.084 0.916 25 H 0.090 0.910 26 H 0.107 0.893 27 H 0.105 0.895 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.215 0.785 31 H 0.120 0.880 32 H 0.139 0.861 33 H 0.100 0.900 34 H 0.118 0.882 35 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -3.288 9.548 5.898 11.695 hybrid contribution -0.231 0.191 -1.061 1.102 sum -3.519 9.739 4.837 11.429 Atomic orbital electron populations 1.21357 0.79332 1.02875 1.01188 1.57710 1.14433 1.21497 1.90292 1.21241 0.97594 0.86194 0.94785 1.22672 0.93896 0.92254 0.93812 1.86845 1.71913 1.50290 1.26133 1.01476 0.72762 0.71664 0.74901 1.93524 1.39395 1.84047 1.77867 1.93462 1.67131 1.58529 1.78577 1.29444 1.08716 1.25476 1.24949 1.20266 0.95495 0.93287 0.94677 1.21337 0.99102 1.05745 0.94240 1.17844 0.89267 0.86981 0.92339 1.19913 1.24204 1.06661 0.95814 0.89509 1.26133 0.92595 0.94864 1.01361 1.69836 1.25253 1.05941 1.37878 0.86158 0.78928 0.79867 0.81123 1.19125 1.19614 1.18042 1.21028 1.00511 1.09733 0.94757 1.20174 0.93188 0.94336 0.94213 0.93315 0.91643 0.90997 0.89298 0.89468 0.93221 0.93805 0.78507 0.88032 0.86070 0.90006 0.88234 0.87833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.30 10.33 59.85 0.62 1.92 16 2 N -1.00 -16.05 3.13 -121.76 -0.38 -16.43 16 3 C 0.13 1.69 5.84 -4.04 -0.02 1.67 16 4 C 0.05 0.61 7.39 37.15 0.27 0.89 16 5 O -0.55 -7.83 11.72 -54.46 -0.64 -8.46 16 6 S 2.69 55.77 5.56 -107.50 -0.60 55.17 16 7 O -0.96 -21.47 14.40 -65.29 -0.94 -22.41 16 8 O -0.99 -22.61 16.33 -57.17 -0.93 -23.55 16 9 C -0.79 -18.20 6.00 -39.29 -0.24 -18.44 16 10 C -0.02 -0.41 9.49 -39.66 -0.38 -0.79 16 11 C -0.18 -4.72 8.70 -38.87 -0.34 -5.05 16 12 C 0.14 3.61 5.57 -106.83 -0.60 3.01 16 13 C -0.44 -10.94 9.05 -37.74 -0.34 -11.28 16 14 H 0.09 2.04 7.91 -52.49 -0.41 1.62 16 15 C 0.07 1.70 5.14 -17.34 -0.09 1.61 16 16 N -0.77 -18.75 10.97 55.55 0.61 -18.15 16 17 Si 0.92 17.20 29.59 -169.99 -5.03 12.17 16 18 H -0.27 -4.95 7.11 56.52 0.40 -4.54 16 19 H -0.27 -4.98 7.11 56.52 0.40 -4.58 16 20 H -0.26 -4.77 7.11 56.52 0.40 -4.36 16 21 C -0.24 -5.81 9.80 -38.87 -0.38 -6.19 16 22 C 0.00 0.02 9.49 -39.66 -0.38 -0.35 16 23 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 24 H 0.06 0.67 7.94 -51.93 -0.41 0.26 16 25 H 0.07 1.01 7.79 -51.93 -0.40 0.61 16 26 H 0.09 1.28 7.61 -51.93 -0.40 0.88 16 27 H 0.09 0.87 7.96 -51.93 -0.41 0.45 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.37 3.36 9.12 45.56 0.42 3.78 16 31 H 0.10 2.26 7.59 -52.49 -0.40 1.87 16 32 H 0.12 3.13 6.18 -52.49 -0.32 2.80 16 33 H 0.29 6.32 8.30 -40.82 -0.34 5.98 16 34 H 0.10 2.21 8.06 -52.49 -0.42 1.79 16 35 H 0.10 2.16 7.60 -52.48 -0.40 1.76 16 LS Contribution 310.29 15.07 4.68 4.68 Total: -1.00 -32.81 310.29 -8.67 -41.48 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -3.57 Total: 8.50 kcal Atomic # 6 Polarization: -31.15 SS G_CDS: -1.86 Total: -33.01 kcal Atomic # 7 Polarization: -34.80 SS G_CDS: 0.23 Total: -34.57 kcal Atomic # 8 Polarization: -51.91 SS G_CDS: -2.51 Total: -54.42 kcal Atomic # 14 Polarization: 17.20 SS G_CDS: -5.03 Total: 12.17 kcal Atomic # 16 Polarization: 55.77 SS G_CDS: -0.60 Total: 55.17 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -32.81 -8.67 -41.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092131295.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.601 kcal (2) G-P(sol) polarization free energy of solvation -32.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds