Wall clock time and date at job start Tue Mar 31 2020 05:37:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46501 * 120.00241 * 2 1 4 4 C 1.52994 * 109.47094 * 84.99729 * 3 2 1 5 5 O 1.42898 * 109.47303 * 65.00361 * 4 3 2 6 6 S 1.65602 * 120.00032 * 179.97438 * 2 1 3 7 7 O 1.42102 * 106.40349 * 203.54062 * 6 2 1 8 8 O 1.42104 * 106.40048 * 336.46033 * 6 2 1 9 9 C 1.76200 * 107.21886 * 89.99842 * 6 2 1 10 10 C 1.38630 * 119.75251 * 269.73063 * 9 6 2 11 11 C 1.37623 * 120.24848 * 179.72100 * 10 9 6 12 12 C 1.40712 * 119.74206 * 0.56873 * 11 10 9 13 13 C 1.41402 * 120.24080 * 179.68281 * 12 11 10 14 14 H 1.08001 * 119.99771 * 155.30837 * 13 12 11 15 15 C 1.39940 * 120.00003 * 335.31498 * 13 12 11 16 16 N 1.30829 * 119.99800 * 342.22687 * 15 13 12 17 17 Si 1.86801 * 120.00046 * 162.23706 * 15 13 12 18 18 H 1.48495 * 109.47447 * 94.65741 * 17 15 13 19 19 H 1.48502 * 109.46754 * 214.66313 * 17 15 13 20 20 H 1.48506 * 109.46914 * 334.65726 * 17 15 13 21 21 C 1.40709 * 119.51492 * 359.70253 * 12 11 10 22 22 C 1.37619 * 119.74597 * 0.02562 * 21 12 11 23 23 H 1.09002 * 109.47174 * 270.00402 * 1 2 3 24 24 H 1.08998 * 109.47137 * 29.99971 * 1 2 3 25 25 H 1.09004 * 109.47127 * 150.00023 * 1 2 3 26 26 H 1.08995 * 109.47261 * 204.99836 * 3 2 1 27 27 H 1.08997 * 109.46835 * 325.00049 * 3 2 1 28 28 H 1.09006 * 109.47222 * 185.00274 * 4 3 2 29 29 H 1.09001 * 109.47254 * 305.00359 * 4 3 2 30 30 H 0.96704 * 114.00402 * 179.97438 * 5 4 3 31 31 H 1.07998 * 119.87395 * 359.97438 * 10 9 6 32 32 H 1.07994 * 120.12388 * 180.27918 * 11 10 9 33 33 H 0.97001 * 119.99569 * 180.02562 * 16 15 13 34 34 H 1.07998 * 120.12893 * 179.97438 * 21 12 11 35 35 H 1.08005 * 119.88006 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.3436 1.7732 1.4370 5 8 3.1598 0.8656 2.1799 6 16 2.2930 -1.4341 0.0006 7 8 3.5760 -1.1566 0.5450 8 8 1.4113 -2.4063 0.5455 9 6 2.5538 -1.8866 -1.6822 10 6 1.6160 -2.6698 -2.3373 11 6 1.8066 -3.0244 -3.6533 12 6 2.9645 -2.5989 -4.3303 13 6 3.1742 -2.9628 -5.6805 14 1 3.8036 -2.3538 -6.3123 15 6 2.5660 -4.1120 -6.1980 16 7 2.1013 -5.0277 -5.3874 17 14 2.4178 -4.3385 -8.0463 18 1 3.5636 -5.1440 -8.5397 19 1 1.1475 -5.0415 -8.3585 20 1 2.4244 -3.0100 -8.7099 21 6 3.9123 -1.8091 -3.6537 22 6 3.6982 -1.4618 -2.3393 23 1 -0.3633 0.0001 1.0277 24 1 -0.3633 0.8900 -0.5138 25 1 -0.3633 -0.8900 -0.5138 26 1 3.1858 1.1177 -0.4343 27 1 1.6502 2.0042 -0.5894 28 1 2.8094 2.7587 1.4305 29 1 1.3594 1.8396 1.9006 30 1 3.2959 1.1233 3.1020 31 1 0.7306 -2.9994 -1.8141 32 1 1.0725 -3.6308 -4.1630 33 1 1.6801 -5.8244 -5.7461 34 1 4.8047 -1.4775 -4.1635 35 1 4.4245 -0.8560 -1.8178 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092131295.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:40 Heat of formation + Delta-G solvation = -131.253343 kcal Electronic energy + Delta-G solvation = -20724.900359 eV Core-core repulsion = 17427.598119 eV Total energy + Delta-G solvation = -3297.302240 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.087 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.38292 -38.44881 -37.98570 -36.60469 -36.20966 -35.79982 -32.06702 -31.30635 -30.41764 -27.61723 -26.73255 -23.38247 -23.09433 -22.94321 -19.79117 -19.43592 -18.68906 -18.18716 -18.16730 -17.21833 -16.89328 -15.89477 -15.83410 -15.51112 -15.12053 -14.88994 -14.72065 -14.13273 -14.01615 -13.94193 -13.74305 -13.53234 -13.08423 -12.97450 -12.95167 -12.80747 -12.71185 -12.55247 -12.45080 -12.03616 -11.99243 -11.55205 -11.32003 -11.18677 -10.77561 -9.92536 -9.74694 -9.56311 -8.87106 -6.65169 -0.24293 0.49318 1.03694 1.35692 1.42209 1.53305 2.11381 2.24978 2.55472 3.07442 3.49452 3.53450 3.66667 4.07143 4.26822 4.29801 4.32173 4.35556 4.63995 4.68958 4.76594 4.85296 4.91043 4.94753 4.98248 5.09938 5.19820 5.23942 5.51468 5.58422 5.72557 5.84350 5.93356 6.14766 6.48196 6.67641 6.80447 7.08256 8.08565 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.035468 B = 0.004384 C = 0.004292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.254026 B = 6385.262059 C = 6522.394082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.998 5.998 3 C 0.113 3.887 4 C 0.051 3.949 5 O -0.587 6.587 6 S 2.718 3.282 7 O -0.976 6.976 8 O -1.012 7.012 9 C -0.802 4.802 10 C -0.024 4.024 11 C -0.207 4.207 12 C 0.110 3.890 13 C -0.467 4.467 14 H 0.094 0.906 15 C 0.033 3.967 16 N -0.802 5.802 17 Si 0.994 3.006 18 H -0.259 1.259 19 H -0.263 1.263 20 H -0.252 1.252 21 C -0.257 4.257 22 C -0.002 4.002 23 H 0.063 0.937 24 H 0.102 0.898 25 H 0.057 0.943 26 H 0.072 0.928 27 H 0.125 0.875 28 H 0.081 0.919 29 H 0.061 0.939 30 H 0.388 0.612 31 H 0.112 0.888 32 H 0.111 0.889 33 H 0.298 0.702 34 H 0.113 0.887 35 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.963 12.202 5.496 13.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.837 5.837 3 C -0.012 4.012 4 C -0.028 4.028 5 O -0.394 6.394 6 S 2.813 3.187 7 O -0.966 6.966 8 O -1.003 7.003 9 C -0.894 4.894 10 C -0.044 4.044 11 C -0.227 4.227 12 C 0.107 3.893 13 C -0.494 4.494 14 H 0.112 0.888 15 C -0.186 4.186 16 N -0.425 5.425 17 Si 0.813 3.187 18 H -0.184 1.184 19 H -0.187 1.187 20 H -0.175 1.175 21 C -0.277 4.277 22 C -0.022 4.022 23 H 0.082 0.918 24 H 0.121 0.879 25 H 0.076 0.924 26 H 0.091 0.909 27 H 0.143 0.857 28 H 0.099 0.901 29 H 0.080 0.920 30 H 0.237 0.763 31 H 0.130 0.870 32 H 0.129 0.871 33 H 0.109 0.891 34 H 0.131 0.869 35 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -3.828 11.217 5.713 13.157 hybrid contribution -0.082 -0.236 -0.858 0.894 sum -3.910 10.981 4.855 12.626 Atomic orbital electron populations 1.21653 0.77391 1.04071 1.02605 1.57323 1.15597 1.20849 1.89893 1.21679 0.97095 0.85465 0.96973 1.22807 0.94852 0.92894 0.92258 1.86777 1.72665 1.51964 1.27966 1.00699 0.72330 0.72224 0.73459 1.93493 1.40903 1.84603 1.77632 1.93420 1.67614 1.60663 1.78575 1.29943 1.08277 1.24835 1.26318 1.20454 0.96233 0.93292 0.94378 1.21361 0.99403 1.06821 0.95157 1.18208 0.89843 0.87948 0.93332 1.20232 1.25535 1.07725 0.95930 0.88839 1.27071 0.91406 0.93806 1.06291 1.69877 1.25649 1.06657 1.40270 0.85008 0.79240 0.79954 0.74513 1.18383 1.18711 1.17530 1.21275 1.00881 1.10043 0.95513 1.20446 0.93590 0.94179 0.93990 0.91829 0.87927 0.92409 0.90946 0.85683 0.90098 0.92048 0.76343 0.87042 0.87136 0.89059 0.86922 0.85818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.09 10.33 127.77 1.32 3.41 16 2 N -1.00 -29.88 3.13 -539.14 -1.69 -31.57 16 3 C 0.11 2.65 5.84 86.38 0.50 3.16 16 4 C 0.05 1.00 7.39 71.98 0.53 1.53 16 5 O -0.59 -15.60 11.72 -130.60 -1.53 -17.13 16 6 S 2.72 111.07 5.56 -56.49 -0.31 110.76 16 7 O -0.98 -43.23 14.40 -120.24 -1.73 -44.97 16 8 O -1.01 -46.27 16.33 -128.00 -2.09 -48.36 16 9 C -0.80 -37.16 6.00 22.46 0.13 -37.02 16 10 C -0.02 -1.16 9.49 22.22 0.21 -0.95 16 11 C -0.21 -10.99 8.70 22.73 0.20 -10.80 16 12 C 0.11 5.87 5.57 -21.29 -0.12 5.75 16 13 C -0.47 -23.77 9.05 23.46 0.21 -23.55 16 14 H 0.09 4.44 7.91 -2.91 -0.02 4.42 16 15 C 0.03 1.57 5.14 85.25 0.44 2.01 16 16 N -0.80 -39.98 10.97 21.83 0.24 -39.74 16 17 Si 0.99 34.89 29.59 68.60 2.03 36.92 16 18 H -0.26 -8.77 7.11 99.48 0.71 -8.06 16 19 H -0.26 -8.78 7.11 99.48 0.71 -8.08 16 20 H -0.25 -8.57 7.11 99.48 0.71 -7.86 16 21 C -0.26 -12.66 9.80 22.73 0.22 -12.44 16 22 C 0.00 -0.11 9.49 22.22 0.21 0.10 16 23 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 24 H 0.10 1.69 7.94 -2.39 -0.02 1.67 16 25 H 0.06 1.55 7.79 -2.39 -0.02 1.53 16 26 H 0.07 1.96 7.61 -2.39 -0.02 1.94 16 27 H 0.13 1.97 7.96 -2.39 -0.02 1.95 16 28 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 29 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.39 6.35 9.12 -74.05 -0.68 5.68 16 31 H 0.11 5.10 7.59 -2.91 -0.02 5.08 16 32 H 0.11 5.96 6.18 -2.91 -0.02 5.95 16 33 H 0.30 13.20 8.30 -92.71 -0.77 12.43 16 34 H 0.11 5.07 8.06 -2.91 -0.02 5.04 16 35 H 0.12 5.11 7.60 -2.91 -0.02 5.09 16 Total: -1.00 -71.96 310.29 -0.78 -72.75 By element: Atomic # 1 Polarization: 29.70 SS G_CDS: 0.43 Total: 30.14 kcal Atomic # 6 Polarization: -72.67 SS G_CDS: 3.86 Total: -68.81 kcal Atomic # 7 Polarization: -69.85 SS G_CDS: -1.45 Total: -71.30 kcal Atomic # 8 Polarization: -105.10 SS G_CDS: -5.35 Total: -110.45 kcal Atomic # 14 Polarization: 34.89 SS G_CDS: 2.03 Total: 36.92 kcal Atomic # 16 Polarization: 111.07 SS G_CDS: -0.31 Total: 110.76 kcal Total: -71.96 -0.78 -72.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092131295.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.506 kcal (2) G-P(sol) polarization free energy of solvation -71.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds