Wall clock time and date at job start Tue Mar 31 2020 05:36:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 S 1.81407 * 109.46957 * 2 1 4 4 O 1.42097 * 110.53840 * 68.37332 * 3 2 1 5 5 O 1.42096 * 110.54125 * 291.62433 * 3 2 1 6 6 N 1.65594 * 104.45156 * 179.97438 * 3 2 1 7 7 C 1.46508 * 119.99979 * 64.99840 * 6 3 2 8 8 C 1.50699 * 109.47169 * 165.00136 * 7 6 3 9 9 C 1.38328 * 119.96224 * 270.02412 * 8 7 6 10 10 C 1.38281 * 120.13505 * 179.97438 * 9 8 7 11 11 C 1.38120 * 120.06679 * 359.68445 * 10 9 8 12 12 C 1.38852 * 119.93490 * 0.58817 * 11 10 9 13 13 O 1.35752 * 120.07221 * 179.70368 * 12 11 10 14 14 C 1.34829 * 116.99954 * 354.17311 * 13 12 11 15 15 H 1.07998 * 119.99999 * 5.03596 * 14 13 12 16 16 C 1.38656 * 119.99670 * 185.03445 * 14 13 12 17 17 N 1.31550 * 120.00275 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99668 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46814 * 90.00164 * 18 16 14 20 20 H 1.48501 * 109.47378 * 210.00272 * 18 16 14 21 21 H 1.48503 * 109.47143 * 330.00397 * 18 16 14 22 22 C 1.38073 * 119.96539 * 89.99807 * 8 7 6 23 23 H 1.09010 * 109.46763 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47352 * 299.99629 * 1 2 3 25 25 H 1.08993 * 109.47171 * 60.00278 * 1 2 3 26 26 H 1.08998 * 109.47680 * 239.99939 * 2 1 3 27 27 H 1.09002 * 109.47352 * 119.99885 * 2 1 3 28 28 H 0.96998 * 119.99948 * 245.00058 * 6 3 2 29 29 H 1.09004 * 109.46757 * 44.99837 * 7 6 3 30 30 H 1.08998 * 109.46890 * 285.00490 * 7 6 3 31 31 H 1.08001 * 119.93314 * 359.97438 * 9 8 7 32 32 H 1.07993 * 119.96315 * 179.97438 * 10 9 8 33 33 H 1.08001 * 120.03256 * 180.31909 * 11 10 9 34 34 H 0.96999 * 119.99936 * 179.97438 * 17 16 14 35 35 H 1.07996 * 120.03547 * 0.04988 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 8 1.8384 2.3438 1.2370 5 8 1.8385 2.3439 -1.2370 6 7 3.7842 1.5655 0.0007 7 6 4.4675 0.9671 -1.1488 8 6 5.9401 1.2788 -1.0760 9 6 6.4338 2.4252 -1.6722 10 6 7.7843 2.7151 -1.6072 11 6 8.6435 1.8635 -0.9407 12 6 8.1519 0.7091 -0.3460 13 8 8.9948 -0.1330 0.3046 14 6 10.3123 0.1449 0.2345 15 1 10.6484 1.0488 -0.2518 16 6 11.2356 -0.7298 0.7867 17 7 10.8262 -1.8310 1.3786 18 14 13.0610 -0.3451 0.6890 19 1 13.4654 0.4423 1.8813 20 1 13.8327 -1.6132 0.6482 21 1 13.3360 0.4415 -0.5402 22 6 6.7949 0.4202 -0.4139 23 1 -0.3633 -1.0278 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 4.2980 1.8768 0.7622 29 1 4.0544 1.3767 -2.0706 30 1 4.3237 -0.1133 -1.1349 31 1 5.7632 3.0953 -2.1896 32 1 8.1669 3.6106 -2.0740 33 1 9.6974 2.0931 -0.8858 34 1 11.4722 -2.4430 1.7646 35 1 6.4088 -0.4748 0.0511 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113303800.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:38 Heat of formation + Delta-G solvation = -80.703927 kcal Electronic energy + Delta-G solvation = -19734.235836 eV Core-core repulsion = 16439.125583 eV Total energy + Delta-G solvation = -3295.110253 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.087 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.19939 -37.25752 -36.96877 -36.03663 -34.80087 -33.41513 -32.34462 -30.47911 -29.07100 -25.78811 -24.95607 -24.31338 -21.73151 -20.91967 -19.38950 -18.12077 -17.60513 -17.14811 -16.46395 -16.27611 -15.22160 -15.18450 -14.73949 -14.47822 -14.30874 -13.86855 -13.66245 -13.54381 -12.94596 -12.81611 -12.74753 -12.41315 -12.18922 -12.08964 -12.04226 -11.85129 -11.71437 -11.33757 -10.90420 -10.86033 -10.75040 -10.72522 -10.48012 -9.52533 -9.39217 -8.90564 -8.25927 -7.33642 -6.50903 -4.10304 0.13435 1.90420 2.26678 2.77464 3.09399 3.10322 3.14981 3.65320 3.91338 4.03499 4.33837 4.47017 4.58439 4.81714 4.88680 5.03132 5.12447 5.25368 5.33144 5.42357 5.57398 5.61477 5.66276 5.83656 5.91131 6.08451 6.23596 6.54741 6.80029 6.94177 7.02024 7.16817 7.27753 7.34439 7.70411 7.93492 8.94834 9.63161 10.66941 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.032103 B = 0.003350 C = 0.003150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.986363 B = 8357.353084 C = 8886.856020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.635 4.635 3 S 2.613 3.387 4 O -0.961 6.961 5 O -0.958 6.958 6 N -1.112 6.112 7 C 0.162 3.838 8 C -0.065 4.065 9 C -0.193 4.193 10 C -0.076 4.076 11 C -0.226 4.226 12 C 0.150 3.850 13 O -0.177 6.177 14 C -0.393 4.393 15 H 0.092 0.908 16 C 0.040 3.960 17 N -0.862 5.862 18 Si 0.941 3.059 19 H -0.273 1.273 20 H -0.277 1.277 21 H -0.267 1.267 22 C -0.175 4.175 23 H 0.080 0.920 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.132 0.868 27 H 0.134 0.866 28 H 0.422 0.578 29 H 0.085 0.915 30 H 0.069 0.931 31 H 0.109 0.891 32 H 0.110 0.890 33 H 0.128 0.872 34 H 0.270 0.730 35 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.588 2.971 -3.934 15.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.764 4.764 3 S 2.705 3.295 4 O -0.951 6.951 5 O -0.948 6.948 6 N -0.873 5.873 7 C 0.037 3.963 8 C -0.067 4.067 9 C -0.213 4.213 10 C -0.094 4.094 11 C -0.245 4.245 12 C 0.096 3.904 13 O -0.081 6.081 14 C -0.469 4.469 15 H 0.110 0.890 16 C -0.164 4.164 17 N -0.497 5.497 18 Si 0.766 3.234 19 H -0.198 1.198 20 H -0.202 1.202 21 H -0.192 1.192 22 C -0.195 4.195 23 H 0.099 0.901 24 H 0.090 0.910 25 H 0.090 0.910 26 H 0.150 0.850 27 H 0.152 0.848 28 H 0.257 0.743 29 H 0.103 0.897 30 H 0.087 0.913 31 H 0.128 0.872 32 H 0.128 0.872 33 H 0.145 0.855 34 H 0.080 0.920 35 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -15.123 3.280 -3.843 15.945 hybrid contribution 1.478 -0.458 0.276 1.572 sum -13.645 2.822 -3.567 14.383 Atomic orbital electron populations 1.21492 0.90667 1.04968 1.03361 1.30527 1.07083 1.26914 1.11898 1.04903 0.73242 0.77139 0.74254 1.93601 1.83333 1.73063 1.45137 1.93593 1.83576 1.71985 1.45631 1.55600 1.25257 1.78008 1.28392 1.20176 0.90768 0.97242 0.88135 1.19132 0.92775 0.95490 0.99270 1.20528 0.95359 0.98684 1.06717 1.20762 0.93205 0.98048 0.97404 1.21248 1.00847 0.96964 1.05461 1.19318 0.90673 0.89805 0.90586 1.83974 1.17334 1.45761 1.61003 1.21325 0.78380 1.08035 1.39202 0.89038 1.25287 1.00219 0.94847 0.96089 1.70029 1.35225 1.10238 1.34183 0.85709 0.80439 0.78205 0.79067 1.19849 1.20228 1.19171 1.20057 0.91080 1.01867 1.06470 0.90109 0.91019 0.91003 0.84976 0.84765 0.74301 0.89701 0.91300 0.87250 0.87240 0.85476 0.91970 0.86353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.92 37.16 0.37 -0.63 16 2 C -0.64 -4.70 6.79 37.16 0.25 -4.44 16 3 S 2.61 28.41 5.46 -107.50 -0.59 27.82 16 4 O -0.96 -13.49 18.08 -57.54 -1.04 -14.53 16 5 O -0.96 -13.24 17.50 -57.54 -1.01 -14.24 16 6 N -1.11 -12.83 5.88 -11.65 -0.07 -12.90 16 7 C 0.16 1.99 6.25 -5.19 -0.03 1.95 16 8 C -0.06 -1.05 5.27 -104.65 -0.55 -1.61 16 9 C -0.19 -3.19 9.70 -39.53 -0.38 -3.57 16 10 C -0.08 -1.34 10.04 -39.61 -0.40 -1.73 16 11 C -0.23 -4.70 9.17 -39.40 -0.36 -5.06 16 12 C 0.15 3.44 6.65 -39.11 -0.26 3.18 16 13 O -0.18 -4.88 9.76 0.05 0.00 -4.88 16 14 C -0.39 -10.69 9.49 30.89 0.29 -10.39 16 15 H 0.09 2.30 5.21 -52.49 -0.27 2.03 16 16 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 17 N -0.86 -24.68 13.67 55.48 0.76 -23.92 16 18 Si 0.94 20.06 29.55 -169.99 -5.02 15.03 16 19 H -0.27 -5.69 7.11 56.52 0.40 -5.28 16 20 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 21 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 22 C -0.17 -3.38 9.65 -39.39 -0.38 -3.76 16 23 H 0.08 0.44 8.14 -51.92 -0.42 0.02 16 24 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.13 0.78 8.14 -51.92 -0.42 0.35 16 27 H 0.13 0.84 8.14 -51.92 -0.42 0.42 16 28 H 0.42 4.96 8.61 -34.46 -0.30 4.66 16 29 H 0.08 0.96 7.64 -51.93 -0.40 0.57 16 30 H 0.07 0.68 8.08 -51.93 -0.42 0.26 16 31 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 32 H 0.11 1.63 8.06 -52.49 -0.42 1.20 16 33 H 0.13 2.66 5.64 -52.49 -0.30 2.37 16 34 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 35 H 0.12 2.17 8.06 -52.49 -0.42 1.75 16 LS Contribution 318.00 15.07 4.79 4.79 Total: -1.00 -34.12 318.00 -7.92 -42.04 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -4.20 Total: 5.88 kcal Atomic # 6 Polarization: -23.54 SS G_CDS: -1.55 Total: -25.09 kcal Atomic # 7 Polarization: -37.52 SS G_CDS: 0.69 Total: -36.83 kcal Atomic # 8 Polarization: -31.60 SS G_CDS: -2.05 Total: -33.65 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.03 kcal Atomic # 16 Polarization: 28.41 SS G_CDS: -0.59 Total: 27.82 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -34.12 -7.92 -42.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113303800.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.665 kcal (2) G-P(sol) polarization free energy of solvation -34.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds