Wall clock time and date at job start Tue Mar 31 2020 05:36:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 S 1.81407 * 109.46957 * 2 1 4 4 O 1.42097 * 110.53840 * 68.37332 * 3 2 1 5 5 O 1.42096 * 110.54125 * 291.62433 * 3 2 1 6 6 N 1.65594 * 104.45156 * 179.97438 * 3 2 1 7 7 C 1.46508 * 119.99979 * 64.99840 * 6 3 2 8 8 C 1.50699 * 109.47169 * 165.00136 * 7 6 3 9 9 C 1.38328 * 119.96224 * 270.02412 * 8 7 6 10 10 C 1.38281 * 120.13505 * 179.97438 * 9 8 7 11 11 C 1.38120 * 120.06679 * 359.68445 * 10 9 8 12 12 C 1.38852 * 119.93490 * 0.58817 * 11 10 9 13 13 O 1.35752 * 120.07221 * 179.70368 * 12 11 10 14 14 C 1.34829 * 116.99954 * 354.17311 * 13 12 11 15 15 H 1.07998 * 119.99999 * 5.03596 * 14 13 12 16 16 C 1.38656 * 119.99670 * 185.03445 * 14 13 12 17 17 N 1.31550 * 120.00275 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99668 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46814 * 90.00164 * 18 16 14 20 20 H 1.48501 * 109.47378 * 210.00272 * 18 16 14 21 21 H 1.48503 * 109.47143 * 330.00397 * 18 16 14 22 22 C 1.38073 * 119.96539 * 89.99807 * 8 7 6 23 23 H 1.09010 * 109.46763 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47352 * 299.99629 * 1 2 3 25 25 H 1.08993 * 109.47171 * 60.00278 * 1 2 3 26 26 H 1.08998 * 109.47680 * 239.99939 * 2 1 3 27 27 H 1.09002 * 109.47352 * 119.99885 * 2 1 3 28 28 H 0.96998 * 119.99948 * 245.00058 * 6 3 2 29 29 H 1.09004 * 109.46757 * 44.99837 * 7 6 3 30 30 H 1.08998 * 109.46890 * 285.00490 * 7 6 3 31 31 H 1.08001 * 119.93314 * 359.97438 * 9 8 7 32 32 H 1.07993 * 119.96315 * 179.97438 * 10 9 8 33 33 H 1.08001 * 120.03256 * 180.31909 * 11 10 9 34 34 H 0.96999 * 119.99936 * 179.97438 * 17 16 14 35 35 H 1.07996 * 120.03547 * 0.04988 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 8 1.8384 2.3438 1.2370 5 8 1.8385 2.3439 -1.2370 6 7 3.7842 1.5655 0.0007 7 6 4.4675 0.9671 -1.1488 8 6 5.9401 1.2788 -1.0760 9 6 6.4338 2.4252 -1.6722 10 6 7.7843 2.7151 -1.6072 11 6 8.6435 1.8635 -0.9407 12 6 8.1519 0.7091 -0.3460 13 8 8.9948 -0.1330 0.3046 14 6 10.3123 0.1449 0.2345 15 1 10.6484 1.0488 -0.2518 16 6 11.2356 -0.7298 0.7867 17 7 10.8262 -1.8310 1.3786 18 14 13.0610 -0.3451 0.6890 19 1 13.4654 0.4423 1.8813 20 1 13.8327 -1.6132 0.6482 21 1 13.3360 0.4415 -0.5402 22 6 6.7949 0.4202 -0.4139 23 1 -0.3633 -1.0278 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 4.2980 1.8768 0.7622 29 1 4.0544 1.3767 -2.0706 30 1 4.3237 -0.1133 -1.1349 31 1 5.7632 3.0953 -2.1896 32 1 8.1669 3.6106 -2.0740 33 1 9.6974 2.0931 -0.8858 34 1 11.4722 -2.4430 1.7646 35 1 6.4088 -0.4748 0.0511 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113303800.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:37 Heat of formation + Delta-G solvation = -106.673671 kcal Electronic energy + Delta-G solvation = -19735.361969 eV Core-core repulsion = 16439.125583 eV Total energy + Delta-G solvation = -3296.236386 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.087 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.81395 -38.64479 -38.11942 -37.00574 -35.96402 -34.27052 -33.98693 -31.85698 -30.63597 -27.48433 -26.38710 -24.90206 -23.24018 -22.46335 -20.26995 -19.64731 -18.97427 -18.50767 -17.45511 -17.19554 -16.74441 -16.41172 -16.12718 -15.90652 -15.47169 -15.32520 -14.99845 -14.41106 -14.19417 -14.09937 -13.81441 -13.48926 -13.33426 -13.30628 -13.18372 -13.06686 -12.92351 -12.47225 -12.36754 -12.25896 -12.25034 -12.09314 -11.54478 -11.20345 -10.80409 -10.36865 -9.73055 -9.00954 -8.46655 -6.14596 -0.70137 0.46626 0.73018 1.36104 1.44358 1.52795 1.84920 2.17878 2.81688 2.87260 3.16690 3.26055 3.44622 3.73748 3.82796 3.96925 4.11912 4.32486 4.40479 4.44502 4.49619 4.57503 4.74737 4.75577 4.88012 4.94414 5.05604 5.13313 5.14305 5.30463 5.64004 5.72831 5.75607 6.01286 6.03866 6.20183 6.98659 7.78614 8.76241 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.032103 B = 0.003350 C = 0.003150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.986363 B = 8357.353084 C = 8886.856020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.613 4.613 3 S 2.620 3.380 4 O -0.998 6.998 5 O -0.991 6.991 6 N -1.116 6.116 7 C 0.160 3.840 8 C -0.054 4.054 9 C -0.178 4.178 10 C -0.075 4.075 11 C -0.239 4.239 12 C 0.110 3.890 13 O -0.230 6.230 14 C -0.413 4.413 15 H 0.100 0.900 16 C -0.021 4.021 17 N -0.919 5.919 18 Si 1.016 2.984 19 H -0.265 1.265 20 H -0.271 1.271 21 H -0.254 1.254 22 C -0.180 4.180 23 H 0.101 0.899 24 H 0.070 0.930 25 H 0.075 0.925 26 H 0.157 0.843 27 H 0.151 0.849 28 H 0.420 0.580 29 H 0.102 0.898 30 H 0.098 0.902 31 H 0.142 0.858 32 H 0.143 0.857 33 H 0.117 0.883 34 H 0.272 0.728 35 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.023 3.654 -5.412 17.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.746 4.746 3 S 2.716 3.284 4 O -0.989 6.989 5 O -0.981 6.981 6 N -0.875 5.875 7 C 0.034 3.966 8 C -0.055 4.055 9 C -0.197 4.197 10 C -0.092 4.092 11 C -0.259 4.259 12 C 0.060 3.940 13 O -0.137 6.137 14 C -0.490 4.490 15 H 0.118 0.882 16 C -0.219 4.219 17 N -0.557 5.557 18 Si 0.835 3.165 19 H -0.190 1.190 20 H -0.196 1.196 21 H -0.177 1.177 22 C -0.200 4.200 23 H 0.120 0.880 24 H 0.090 0.910 25 H 0.094 0.906 26 H 0.175 0.825 27 H 0.170 0.830 28 H 0.254 0.746 29 H 0.120 0.880 30 H 0.116 0.884 31 H 0.160 0.840 32 H 0.160 0.840 33 H 0.135 0.865 34 H 0.081 0.919 35 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -16.582 4.046 -5.354 17.888 hybrid contribution 1.574 -0.548 0.600 1.772 sum -15.007 3.498 -4.754 16.126 Atomic orbital electron populations 1.21685 0.90061 1.06411 1.03709 1.30334 1.07511 1.22655 1.14076 1.04579 0.72577 0.78507 0.72715 1.93552 1.83620 1.75262 1.46470 1.93545 1.83789 1.74211 1.46520 1.55501 1.25512 1.78405 1.28087 1.20330 0.87763 0.99397 0.89070 1.19537 0.94751 0.94282 0.96957 1.21060 0.95343 0.98507 1.04777 1.21133 0.93408 0.98366 0.96341 1.21349 1.01095 0.97193 1.06264 1.19919 0.91701 0.90504 0.91891 1.83935 1.17771 1.48032 1.63968 1.21789 0.79054 1.08619 1.39499 0.88225 1.26521 1.05276 0.94523 0.95536 1.70166 1.36968 1.11928 1.36639 0.84622 0.73859 0.78305 0.79668 1.18955 1.19620 1.17749 1.20316 0.90140 1.02776 1.06747 0.88029 0.91049 0.90610 0.82523 0.83040 0.74583 0.88020 0.88406 0.83984 0.83962 0.86496 0.91863 0.85999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.67 9.92 71.98 0.71 -0.96 16 2 C -0.61 -6.81 6.79 71.98 0.49 -6.32 16 3 S 2.62 51.41 5.46 -56.49 -0.31 51.11 16 4 O -1.00 -27.09 18.08 -127.65 -2.31 -29.40 16 5 O -0.99 -25.30 17.50 -127.65 -2.23 -27.53 16 6 N -1.12 -22.98 5.88 -190.77 -1.12 -24.10 16 7 C 0.16 3.35 6.25 85.63 0.54 3.88 16 8 C -0.05 -1.61 5.27 -19.88 -0.10 -1.71 16 9 C -0.18 -5.26 9.70 22.30 0.22 -5.04 16 10 C -0.07 -2.45 10.04 22.25 0.22 -2.23 16 11 C -0.24 -10.04 9.17 22.39 0.21 -9.84 16 12 C 0.11 5.21 6.65 22.58 0.15 5.36 16 13 O -0.23 -13.39 9.76 -22.74 -0.22 -13.61 16 14 C -0.41 -23.54 9.49 67.92 0.64 -22.90 16 15 H 0.10 5.22 5.21 -2.91 -0.02 5.21 16 16 C -0.02 -1.16 5.49 84.83 0.47 -0.70 16 17 N -0.92 -55.21 13.67 21.61 0.30 -54.92 16 18 Si 1.02 42.10 29.55 68.60 2.03 44.13 16 19 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 20 H -0.27 -10.83 7.11 99.48 0.71 -10.13 16 21 H -0.25 -9.78 7.11 99.48 0.71 -9.08 16 22 C -0.18 -6.92 9.65 22.39 0.22 -6.71 16 23 H 0.10 0.71 8.14 -2.38 -0.02 0.69 16 24 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 25 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.16 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.15 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.42 9.20 8.61 -96.75 -0.83 8.37 16 29 H 0.10 1.86 7.64 -2.38 -0.02 1.84 16 30 H 0.10 1.53 8.08 -2.39 -0.02 1.51 16 31 H 0.14 3.39 8.06 -2.91 -0.02 3.36 16 32 H 0.14 3.73 8.06 -2.91 -0.02 3.70 16 33 H 0.12 5.04 5.64 -2.91 -0.02 5.02 16 34 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 35 H 0.12 4.50 8.06 -2.91 -0.02 4.48 16 Total: -1.00 -78.43 318.00 0.17 -78.26 By element: Atomic # 1 Polarization: 22.95 SS G_CDS: 0.28 Total: 23.23 kcal Atomic # 6 Polarization: -50.92 SS G_CDS: 3.76 Total: -47.16 kcal Atomic # 7 Polarization: -78.19 SS G_CDS: -0.83 Total: -79.02 kcal Atomic # 8 Polarization: -65.78 SS G_CDS: -4.76 Total: -70.54 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 2.03 Total: 44.13 kcal Atomic # 16 Polarization: 51.41 SS G_CDS: -0.31 Total: 51.11 kcal Total: -78.43 0.17 -78.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113303800.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.412 kcal (2) G-P(sol) polarization free energy of solvation -78.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds