Wall clock time and date at job start Tue Mar 31 2020 05:36:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.39939 * 120.00007 * 2 1 4 4 C 1.38869 * 120.01551 * 155.27569 * 3 2 1 5 5 C 1.38107 * 119.97712 * 180.28230 * 4 3 2 6 6 C 1.38708 * 120.01978 * 359.44465 * 5 4 3 7 7 O 1.35999 * 119.98081 * 180.30371 * 6 5 4 8 8 C 1.42895 * 116.99908 * 180.02562 * 7 6 5 9 9 C 1.50702 * 109.47346 * 179.97438 * 8 7 6 10 10 H 1.08006 * 119.99850 * 359.97438 * 9 8 7 11 11 C 1.37872 * 120.00354 * 179.97438 * 9 8 7 12 12 N 1.31516 * 120.00051 * 179.97438 * 11 9 8 13 13 Si 1.86799 * 120.00061 * 0.02562 * 11 9 8 14 14 H 1.48500 * 109.47511 * 89.99189 * 13 11 9 15 15 H 1.48494 * 109.47465 * 209.99876 * 13 11 9 16 16 H 1.48513 * 109.47004 * 329.99398 * 13 11 9 17 17 C 1.38703 * 120.03548 * 0.27995 * 6 5 4 18 18 C 1.38112 * 120.02059 * 359.97438 * 17 6 5 19 19 S 1.65601 * 119.99823 * 180.02562 * 2 1 3 20 20 C 1.81399 * 104.45142 * 269.99849 * 19 2 1 21 21 O 1.42101 * 104.27960 * 26.07029 * 19 2 1 22 22 O 1.42108 * 104.27579 * 153.92777 * 19 2 1 23 23 H 1.09004 * 109.47047 * 89.99863 * 1 2 3 24 24 H 1.09006 * 109.46943 * 209.99463 * 1 2 3 25 25 H 1.08993 * 109.46734 * 329.99411 * 1 2 3 26 26 H 1.07998 * 120.00986 * 0.02562 * 4 3 2 27 27 H 1.08002 * 119.99286 * 179.72912 * 5 4 3 28 28 H 1.09003 * 109.47134 * 299.99744 * 8 7 6 29 29 H 1.08996 * 109.47717 * 59.99736 * 8 7 6 30 30 H 0.97002 * 119.99781 * 180.02562 * 12 11 9 31 31 H 1.07997 * 119.98646 * 180.02562 * 17 6 5 32 32 H 1.08000 * 120.00547 * 180.02562 * 18 17 6 33 33 H 1.08992 * 109.46926 * 59.99854 * 20 19 2 34 34 H 1.08995 * 109.47149 * 180.02562 * 20 19 2 35 35 H 1.09003 * 109.46921 * 299.99906 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1647 1.2119 0.0000 4 6 3.4580 1.2674 0.5029 5 6 4.1456 2.4651 0.5079 6 6 3.5492 3.6098 0.0002 7 8 4.2294 4.7875 -0.0002 8 6 3.5542 5.9264 -0.5376 9 6 4.4562 7.1308 -0.4542 10 1 5.4460 7.0361 -0.0324 11 6 4.0180 8.3537 -0.9162 12 7 4.8050 9.4048 -0.8429 13 14 2.3059 8.5179 -1.6450 14 1 1.3403 8.8572 -0.5691 15 1 2.3047 9.5936 -2.6687 16 1 1.9116 7.2330 -2.2768 17 6 2.2597 3.5540 -0.5075 18 6 1.5686 2.3582 -0.5085 19 16 2.2930 -1.4342 -0.0006 20 6 2.5194 -1.8270 1.7558 21 8 1.3969 -2.3559 -0.6063 22 8 3.5395 -1.1189 -0.6058 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 -0.8901 0.5138 25 1 -0.3632 0.8899 0.5139 26 1 3.9242 0.3751 0.8938 27 1 5.1498 2.5094 0.9030 28 1 3.2956 5.7373 -1.5795 29 1 2.6453 6.1134 0.0341 30 1 4.4965 10.2653 -1.1676 31 1 1.7962 4.4457 -0.9030 32 1 0.5646 2.3150 -0.9043 33 1 1.5452 -1.9197 2.2358 34 1 3.0626 -2.7671 1.8507 35 1 3.0867 -1.0298 2.2362 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000124282764.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:55 Heat of formation + Delta-G solvation = -67.759517 kcal Electronic energy + Delta-G solvation = -20191.906832 eV Core-core repulsion = 16897.357890 eV Total energy + Delta-G solvation = -3294.548941 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.087 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.85152 -37.88320 -37.45632 -36.24592 -35.10066 -32.81160 -31.01022 -29.85869 -29.48193 -28.04799 -26.20292 -23.47072 -21.85478 -21.46720 -19.32772 -18.13942 -17.71941 -17.08812 -16.82428 -16.31860 -15.60427 -15.32699 -14.89574 -14.46804 -14.36701 -14.12005 -13.71286 -13.63453 -13.28442 -13.04873 -12.99127 -12.55972 -12.51425 -12.36183 -12.29357 -12.10950 -11.58482 -11.43756 -11.22475 -11.11619 -10.72415 -10.54357 -10.00995 -9.66252 -9.36386 -8.84051 -8.74532 -7.35424 -6.25329 -4.27327 -0.15114 1.51624 1.68246 2.20602 3.15563 3.22288 3.23476 3.50861 3.76740 3.98693 4.13833 4.22853 4.27064 4.46958 4.53266 4.95294 4.98827 5.05260 5.14689 5.24206 5.32796 5.46500 5.50404 5.60609 5.79029 6.00679 6.22374 6.30498 6.57749 6.59641 6.70532 6.72536 7.04688 7.37226 7.97910 8.50234 8.84550 9.30591 10.87061 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.038885 B = 0.003633 C = 0.003426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.901038 B = 7706.301719 C = 8169.998236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.939 5.939 3 C 0.106 3.894 4 C -0.115 4.115 5 C -0.129 4.129 6 C 0.133 3.867 7 O -0.302 6.302 8 C 0.167 3.833 9 C -0.529 4.529 10 H 0.087 0.913 11 C 0.078 3.922 12 N -0.888 5.888 13 Si 0.874 3.126 14 H -0.271 1.271 15 H -0.279 1.279 16 H -0.265 1.265 17 C -0.189 4.189 18 C -0.100 4.100 19 S 2.604 3.396 20 C -0.674 4.674 21 O -0.952 6.952 22 O -0.937 6.937 23 H 0.066 0.934 24 H 0.075 0.925 25 H 0.080 0.920 26 H 0.125 0.875 27 H 0.136 0.864 28 H 0.019 0.981 29 H 0.014 0.986 30 H 0.269 0.731 31 H 0.133 0.867 32 H 0.125 0.875 33 H 0.129 0.871 34 H 0.130 0.870 35 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.932 -21.604 5.192 24.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.767 5.767 3 C 0.012 3.988 4 C -0.136 4.136 5 C -0.149 4.149 6 C 0.085 3.915 7 O -0.214 6.214 8 C 0.094 3.906 9 C -0.567 4.567 10 H 0.105 0.895 11 C -0.125 4.125 12 N -0.525 5.525 13 Si 0.699 3.301 14 H -0.196 1.196 15 H -0.204 1.204 16 H -0.189 1.189 17 C -0.208 4.208 18 C -0.122 4.122 19 S 2.698 3.302 20 C -0.824 4.824 21 O -0.942 6.942 22 O -0.927 6.927 23 H 0.084 0.916 24 H 0.094 0.906 25 H 0.099 0.901 26 H 0.142 0.858 27 H 0.154 0.846 28 H 0.037 0.963 29 H 0.032 0.968 30 H 0.080 0.920 31 H 0.151 0.849 32 H 0.143 0.857 33 H 0.147 0.853 34 H 0.149 0.851 35 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -9.501 -21.876 4.458 24.263 hybrid contribution -1.246 0.450 0.193 1.339 sum -10.748 -21.426 4.650 24.418 Atomic orbital electron populations 1.21627 0.77465 1.03512 1.03176 1.55279 1.15331 1.19695 1.86405 1.17188 0.92713 0.85481 1.03376 1.20619 0.93177 0.98074 1.01745 1.20184 1.01030 0.89732 1.03914 1.19251 0.90633 0.87640 0.94017 1.86190 1.42780 1.15185 1.77263 1.21004 0.93969 0.82596 0.93071 1.20780 1.03051 0.90269 1.42563 0.89539 1.24705 0.97581 0.95165 0.95078 1.69854 1.36404 1.00252 1.46020 0.86888 0.84687 0.78710 0.79766 1.19643 1.20437 1.18927 1.21263 0.95180 0.98924 1.05445 1.20557 1.00247 0.91204 1.00228 1.05245 0.74250 0.72892 0.77847 1.30610 1.12015 1.12458 1.27346 1.93613 1.64940 1.62057 1.73629 1.93682 1.43309 1.82248 1.73466 0.91577 0.90609 0.90109 0.85752 0.84639 0.96315 0.96815 0.92040 0.84886 0.85710 0.85274 0.85129 0.84852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.66 9.20 59.85 0.55 1.21 16 2 N -0.94 -9.72 3.33 -65.34 -0.22 -9.94 16 3 C 0.11 1.41 6.05 -83.70 -0.51 0.91 16 4 C -0.12 -1.60 8.42 -39.40 -0.33 -1.93 16 5 C -0.13 -2.10 9.98 -39.46 -0.39 -2.49 16 6 C 0.13 2.53 6.69 -39.24 -0.26 2.26 16 7 O -0.30 -6.95 10.12 -19.74 -0.20 -7.15 16 8 C 0.17 4.06 3.56 36.01 0.13 4.19 16 9 C -0.53 -15.16 9.99 -34.44 -0.34 -15.50 16 10 H 0.09 2.71 8.06 -52.48 -0.42 2.29 16 11 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 12 N -0.89 -26.54 13.96 55.43 0.77 -25.76 16 13 Si 0.87 20.39 27.47 -169.99 -4.67 15.72 16 14 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 15 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 16 H -0.26 -5.85 6.54 56.52 0.37 -5.48 16 17 C -0.19 -3.20 9.03 -39.46 -0.36 -3.56 16 18 C -0.10 -1.41 9.13 -39.40 -0.36 -1.77 16 19 S 2.60 25.45 5.38 -107.50 -0.58 24.87 16 20 C -0.67 -3.65 10.86 101.05 1.10 -2.55 16 21 O -0.95 -11.47 17.09 -57.54 -0.98 -12.45 16 22 O -0.94 -12.71 15.15 -57.54 -0.87 -13.58 16 23 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 24 H 0.08 0.40 7.79 -51.93 -0.40 0.00 16 25 H 0.08 0.52 7.47 -51.93 -0.39 0.14 16 26 H 0.12 1.40 5.13 -52.49 -0.27 1.13 16 27 H 0.14 2.01 8.06 -52.49 -0.42 1.58 16 28 H 0.02 0.45 6.71 -51.93 -0.35 0.10 16 29 H 0.01 0.33 7.09 -51.93 -0.37 -0.04 16 30 H 0.27 7.43 8.31 -40.82 -0.34 7.10 16 31 H 0.13 2.26 6.29 -52.49 -0.33 1.93 16 32 H 0.13 1.41 7.13 -52.49 -0.37 1.04 16 33 H 0.13 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.13 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.13 0.65 7.20 -51.92 -0.37 0.28 16 LS Contribution 305.29 15.07 4.60 4.60 Total: -1.00 -35.16 305.29 -7.16 -42.32 By element: Atomic # 1 Polarization: 2.63 SS G_CDS: -4.14 Total: -1.51 kcal Atomic # 6 Polarization: -16.25 SS G_CDS: -0.88 Total: -17.12 kcal Atomic # 7 Polarization: -36.25 SS G_CDS: 0.56 Total: -35.70 kcal Atomic # 8 Polarization: -31.12 SS G_CDS: -2.05 Total: -33.18 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -4.67 Total: 15.72 kcal Atomic # 16 Polarization: 25.45 SS G_CDS: -0.58 Total: 24.87 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -35.16 -7.16 -42.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124282764.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.444 kcal (2) G-P(sol) polarization free energy of solvation -35.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds