Wall clock time and date at job start Tue Mar 31 2020 05:36:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.39939 * 120.00007 * 2 1 4 4 C 1.38869 * 120.01551 * 155.27569 * 3 2 1 5 5 C 1.38107 * 119.97712 * 180.28230 * 4 3 2 6 6 C 1.38708 * 120.01978 * 359.44465 * 5 4 3 7 7 O 1.35999 * 119.98081 * 180.30371 * 6 5 4 8 8 C 1.42895 * 116.99908 * 180.02562 * 7 6 5 9 9 C 1.50702 * 109.47346 * 179.97438 * 8 7 6 10 10 H 1.08006 * 119.99850 * 359.97438 * 9 8 7 11 11 C 1.37872 * 120.00354 * 179.97438 * 9 8 7 12 12 N 1.31516 * 120.00051 * 179.97438 * 11 9 8 13 13 Si 1.86799 * 120.00061 * 0.02562 * 11 9 8 14 14 H 1.48500 * 109.47511 * 89.99189 * 13 11 9 15 15 H 1.48494 * 109.47465 * 209.99876 * 13 11 9 16 16 H 1.48513 * 109.47004 * 329.99398 * 13 11 9 17 17 C 1.38703 * 120.03548 * 0.27995 * 6 5 4 18 18 C 1.38112 * 120.02059 * 359.97438 * 17 6 5 19 19 S 1.65601 * 119.99823 * 180.02562 * 2 1 3 20 20 C 1.81399 * 104.45142 * 269.99849 * 19 2 1 21 21 O 1.42101 * 104.27960 * 26.07029 * 19 2 1 22 22 O 1.42108 * 104.27579 * 153.92777 * 19 2 1 23 23 H 1.09004 * 109.47047 * 89.99863 * 1 2 3 24 24 H 1.09006 * 109.46943 * 209.99463 * 1 2 3 25 25 H 1.08993 * 109.46734 * 329.99411 * 1 2 3 26 26 H 1.07998 * 120.00986 * 0.02562 * 4 3 2 27 27 H 1.08002 * 119.99286 * 179.72912 * 5 4 3 28 28 H 1.09003 * 109.47134 * 299.99744 * 8 7 6 29 29 H 1.08996 * 109.47717 * 59.99736 * 8 7 6 30 30 H 0.97002 * 119.99781 * 180.02562 * 12 11 9 31 31 H 1.07997 * 119.98646 * 180.02562 * 17 6 5 32 32 H 1.08000 * 120.00547 * 180.02562 * 18 17 6 33 33 H 1.08992 * 109.46926 * 59.99854 * 20 19 2 34 34 H 1.08995 * 109.47149 * 180.02562 * 20 19 2 35 35 H 1.09003 * 109.46921 * 299.99906 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1647 1.2119 0.0000 4 6 3.4580 1.2674 0.5029 5 6 4.1456 2.4651 0.5079 6 6 3.5492 3.6098 0.0002 7 8 4.2294 4.7875 -0.0002 8 6 3.5542 5.9264 -0.5376 9 6 4.4562 7.1308 -0.4542 10 1 5.4460 7.0361 -0.0324 11 6 4.0180 8.3537 -0.9162 12 7 4.8050 9.4048 -0.8429 13 14 2.3059 8.5179 -1.6450 14 1 1.3403 8.8572 -0.5691 15 1 2.3047 9.5936 -2.6687 16 1 1.9116 7.2330 -2.2768 17 6 2.2597 3.5540 -0.5075 18 6 1.5686 2.3582 -0.5085 19 16 2.2930 -1.4342 -0.0006 20 6 2.5194 -1.8270 1.7558 21 8 1.3969 -2.3559 -0.6063 22 8 3.5395 -1.1189 -0.6058 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 -0.8901 0.5138 25 1 -0.3632 0.8899 0.5139 26 1 3.9242 0.3751 0.8938 27 1 5.1498 2.5094 0.9030 28 1 3.2956 5.7373 -1.5795 29 1 2.6453 6.1134 0.0341 30 1 4.4965 10.2653 -1.1676 31 1 1.7962 4.4457 -0.9030 32 1 0.5646 2.3150 -0.9043 33 1 1.5452 -1.9197 2.2358 34 1 3.0626 -2.7671 1.8507 35 1 3.0867 -1.0298 2.2362 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000124282764.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:55 Heat of formation + Delta-G solvation = -94.505691 kcal Electronic energy + Delta-G solvation = -20193.066633 eV Core-core repulsion = 16897.357890 eV Total energy + Delta-G solvation = -3295.708743 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.087 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.11391 -39.19942 -38.31390 -37.10988 -36.21430 -34.91883 -32.18663 -31.01439 -30.34826 -29.57065 -27.05225 -25.11715 -23.10859 -22.86917 -20.22976 -19.54514 -18.84097 -18.65570 -17.64203 -17.51189 -16.90142 -16.54632 -16.45651 -15.95030 -15.37845 -15.18176 -14.78901 -14.55730 -14.22988 -14.00119 -13.91155 -13.82788 -13.70982 -13.39980 -13.25057 -13.15818 -13.05360 -12.85858 -12.57531 -12.19284 -11.98053 -11.96905 -11.81986 -11.37447 -10.94761 -10.72890 -10.00477 -8.58971 -8.42472 -6.53286 -0.85702 0.32788 0.46555 1.32381 1.35748 1.44373 1.45889 2.25750 2.60892 2.69085 2.89648 2.93007 3.04983 3.49499 3.87016 3.91623 4.06628 4.09566 4.24815 4.38854 4.52968 4.55292 4.61669 4.75219 4.80783 4.88703 4.94107 4.97515 5.06183 5.23989 5.43923 5.48642 5.53383 5.84561 6.04224 6.51383 6.79313 7.11079 8.74184 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.038885 B = 0.003633 C = 0.003426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.901038 B = 7706.301719 C = 8169.998236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.941 5.941 3 C 0.125 3.875 4 C -0.118 4.118 5 C -0.135 4.135 6 C 0.087 3.913 7 O -0.334 6.334 8 C 0.181 3.819 9 C -0.555 4.555 10 H 0.034 0.966 11 C 0.019 3.981 12 N -0.936 5.936 13 Si 0.952 3.048 14 H -0.254 1.254 15 H -0.272 1.272 16 H -0.242 1.242 17 C -0.194 4.194 18 C -0.101 4.101 19 S 2.599 3.401 20 C -0.648 4.648 21 O -0.980 6.980 22 O -0.984 6.984 23 H 0.064 0.936 24 H 0.102 0.898 25 H 0.094 0.906 26 H 0.152 0.848 27 H 0.139 0.861 28 H 0.025 0.975 29 H 0.029 0.971 30 H 0.276 0.724 31 H 0.131 0.869 32 H 0.156 0.844 33 H 0.157 0.843 34 H 0.154 0.846 35 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.050 -24.053 5.801 27.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.767 5.767 3 C 0.029 3.971 4 C -0.139 4.139 5 C -0.154 4.154 6 C 0.040 3.960 7 O -0.248 6.248 8 C 0.107 3.893 9 C -0.593 4.593 10 H 0.053 0.947 11 C -0.180 4.180 12 N -0.575 5.575 13 Si 0.772 3.228 14 H -0.178 1.178 15 H -0.197 1.197 16 H -0.166 1.166 17 C -0.213 4.213 18 C -0.123 4.123 19 S 2.698 3.302 20 C -0.803 4.803 21 O -0.970 6.970 22 O -0.974 6.974 23 H 0.083 0.917 24 H 0.120 0.880 25 H 0.113 0.887 26 H 0.169 0.831 27 H 0.157 0.843 28 H 0.043 0.957 29 H 0.046 0.954 30 H 0.085 0.915 31 H 0.148 0.852 32 H 0.173 0.827 33 H 0.176 0.824 34 H 0.172 0.828 35 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -12.638 -24.362 5.033 27.903 hybrid contribution -0.228 0.985 0.118 1.018 sum -12.867 -23.377 5.151 27.177 Atomic orbital electron populations 1.21949 0.75679 1.05593 1.03865 1.55326 1.16561 1.18445 1.86343 1.17314 0.92450 0.86408 1.00894 1.20927 0.93549 0.97983 1.01415 1.20372 1.01505 0.89839 1.03678 1.19585 0.92106 0.86824 0.97485 1.86098 1.43994 1.16279 1.78443 1.20642 0.93134 0.81841 0.93642 1.21048 1.02036 0.93094 1.43120 0.94728 1.25786 1.02972 0.94189 0.95023 1.70010 1.39204 1.01155 1.47113 0.85666 0.78039 0.79762 0.79335 1.17839 1.19682 1.16564 1.21330 0.94524 1.00098 1.05383 1.20836 1.01400 0.90302 0.99755 1.05204 0.72900 0.72211 0.79858 1.30384 1.14389 1.14007 1.21475 1.93578 1.65291 1.62273 1.75888 1.93629 1.44904 1.82739 1.76138 0.91697 0.87990 0.88698 0.83066 0.84297 0.95699 0.95362 0.91491 0.85152 0.82681 0.82440 0.82794 0.83603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.83 9.20 127.77 1.18 2.01 16 2 N -0.94 -16.47 3.33 -360.65 -1.20 -17.67 16 3 C 0.12 3.01 6.05 38.15 0.23 3.24 16 4 C -0.12 -3.07 8.42 22.39 0.19 -2.88 16 5 C -0.13 -4.37 9.98 22.35 0.22 -4.15 16 6 C 0.09 3.34 6.69 22.49 0.15 3.49 16 7 O -0.33 -16.09 10.12 -93.54 -0.95 -17.03 16 8 C 0.18 9.02 3.56 71.24 0.25 9.27 16 9 C -0.56 -33.43 9.99 25.60 0.26 -33.17 16 10 H 0.03 2.35 8.06 -2.91 -0.02 2.32 16 11 C 0.02 1.12 5.47 84.65 0.46 1.59 16 12 N -0.94 -57.94 13.96 21.45 0.30 -57.64 16 13 Si 0.95 41.79 27.47 68.60 1.88 43.67 16 14 H -0.25 -10.45 7.11 99.48 0.71 -9.74 16 15 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 16 H -0.24 -9.71 6.54 99.48 0.65 -9.06 16 17 C -0.19 -6.41 9.03 22.35 0.20 -6.21 16 18 C -0.10 -2.60 9.13 22.39 0.20 -2.40 16 19 S 2.60 43.61 5.38 -56.49 -0.30 43.31 16 20 C -0.65 -3.82 10.86 113.37 1.23 -2.59 16 21 O -0.98 -21.35 17.09 -127.65 -2.18 -23.53 16 22 O -0.98 -25.19 15.15 -127.65 -1.93 -27.12 16 23 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 24 H 0.10 0.65 7.79 -2.38 -0.02 0.63 16 25 H 0.09 0.84 7.47 -2.39 -0.02 0.82 16 26 H 0.15 3.02 5.13 -2.91 -0.01 3.00 16 27 H 0.14 4.23 8.06 -2.91 -0.02 4.20 16 28 H 0.03 1.20 6.71 -2.39 -0.02 1.18 16 29 H 0.03 1.31 7.09 -2.39 -0.02 1.30 16 30 H 0.28 15.59 8.31 -92.71 -0.77 14.82 16 31 H 0.13 4.29 6.29 -2.91 -0.02 4.27 16 32 H 0.16 2.97 7.13 -2.91 -0.02 2.95 16 33 H 0.16 0.19 8.14 -2.39 -0.02 0.17 16 34 H 0.15 0.37 8.14 -2.39 -0.02 0.35 16 35 H 0.15 0.68 7.20 -2.39 -0.02 0.66 16 Total: -1.00 -81.29 305.29 1.24 -80.04 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: 1.05 Total: 7.78 kcal Atomic # 6 Polarization: -36.39 SS G_CDS: 4.58 Total: -31.81 kcal Atomic # 7 Polarization: -74.41 SS G_CDS: -0.90 Total: -75.31 kcal Atomic # 8 Polarization: -62.62 SS G_CDS: -5.06 Total: -67.68 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 1.88 Total: 43.67 kcal Atomic # 16 Polarization: 43.61 SS G_CDS: -0.30 Total: 43.31 kcal Total: -81.29 1.24 -80.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124282764.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.462 kcal (2) G-P(sol) polarization free energy of solvation -81.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds