Wall clock time and date at job start Tue Mar 31 2020 05:29:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.46992 * 2 1 4 4 O 1.42899 * 109.46767 * 184.99730 * 3 2 1 5 5 N 1.46499 * 109.47233 * 239.99779 * 2 1 3 6 6 S 1.65603 * 119.99691 * 58.73934 * 5 2 1 7 7 O 1.42098 * 106.40048 * 178.54053 * 6 5 2 8 8 O 1.42097 * 106.40319 * 311.45982 * 6 5 2 9 9 C 1.76202 * 107.21869 * 64.99916 * 6 5 2 10 10 H 1.07996 * 120.00006 * 0.02562 * 9 6 5 11 11 C 1.37877 * 119.99950 * 179.97438 * 9 6 5 12 12 N 1.31511 * 120.00030 * 359.97438 * 11 9 6 13 13 Si 1.86803 * 119.99861 * 179.97438 * 11 9 6 14 14 H 1.48502 * 109.46946 * 90.00265 * 13 11 9 15 15 H 1.48499 * 109.47088 * 209.99890 * 13 11 9 16 16 H 1.48498 * 109.47186 * 330.00117 * 13 11 9 17 17 C 1.50698 * 109.46983 * 119.99931 * 2 1 3 18 18 C 1.38238 * 120.00003 * 324.44078 * 17 2 1 19 19 C 1.38240 * 119.99746 * 179.78629 * 18 17 2 20 20 C 1.38232 * 120.00248 * 0.44201 * 19 18 17 21 21 C 1.38234 * 119.99777 * 359.81504 * 20 19 18 22 22 C 1.38236 * 119.99989 * 144.71542 * 17 2 1 23 23 H 1.08998 * 109.47030 * 59.99791 * 1 2 3 24 24 H 1.09002 * 109.47080 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47376 * 299.99850 * 1 2 3 26 26 H 1.09003 * 109.46710 * 64.99924 * 3 2 1 27 27 H 1.08998 * 109.46750 * 304.99874 * 3 2 1 28 28 H 0.96704 * 113.99614 * 180.02562 * 4 3 2 29 29 H 0.96998 * 120.00018 * 238.74102 * 5 2 1 30 30 H 0.97002 * 120.00264 * 180.02562 * 12 11 9 31 31 H 1.07996 * 119.99924 * 0.02562 * 18 17 2 32 32 H 1.08005 * 119.99687 * 180.27743 * 19 18 17 33 33 H 1.07996 * 120.00138 * 179.82936 * 20 19 18 34 34 H 1.07995 * 120.00087 * 179.97438 * 21 20 19 35 35 H 1.07998 * 120.00062 * 359.97438 * 22 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4642 1.4442 -0.1174 5 7 2.0184 -0.6906 -1.1961 6 16 1.5927 -0.1433 -2.7000 7 8 2.2443 -0.9919 -3.6351 8 8 0.1849 0.0482 -2.6737 9 6 2.3086 1.4548 -2.8954 10 1 2.8978 1.8837 -2.0983 11 6 2.1174 2.1574 -4.0662 12 7 1.4012 1.6345 -5.0374 13 14 2.8758 3.8520 -4.2730 14 1 4.2309 3.7188 -4.8657 15 1 2.0214 4.6705 -5.1704 16 1 2.9780 4.5137 -2.9475 17 6 2.0323 -0.7104 1.2305 18 6 1.3445 -0.5956 2.4241 19 6 1.8029 -1.2508 3.5517 20 6 2.9540 -2.0134 3.4880 21 6 3.6448 -2.1239 2.2957 22 6 3.1841 -1.4722 1.1670 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.7516 1.9298 0.9314 27 1 1.6054 1.9815 -0.8418 28 1 3.8572 2.3277 -0.1236 29 1 2.5910 -1.4685 -1.1072 30 1 1.2670 2.1286 -5.8612 31 1 0.4469 0.0029 2.4746 32 1 1.2629 -1.1648 4.4831 33 1 3.3136 -2.5231 4.3696 34 1 4.5444 -2.7194 2.2460 35 1 3.7237 -1.5587 0.2355 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000125587945.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:48 Heat of formation + Delta-G solvation = -102.830351 kcal Electronic energy + Delta-G solvation = -21597.479547 eV Core-core repulsion = 18301.409820 eV Total energy + Delta-G solvation = -3296.069727 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.087 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.67541 -37.07848 -35.25039 -34.65459 -33.91805 -33.03674 -31.20005 -30.26493 -28.79417 -26.38168 -25.41841 -22.99086 -22.17768 -19.82667 -18.83325 -17.58034 -17.14231 -16.80638 -15.96004 -15.39775 -15.10035 -14.74528 -14.52196 -13.97332 -13.80144 -13.48365 -13.30570 -13.14413 -12.72394 -12.28163 -11.95592 -11.81574 -11.73382 -11.40321 -11.22536 -10.99585 -10.85320 -10.60098 -10.45133 -10.27864 -10.23786 -9.64713 -9.48009 -9.17444 -9.00581 -8.75216 -8.56798 -8.36692 -6.66962 -5.24839 1.50944 1.57033 2.41179 3.06146 3.13857 3.16794 3.94691 4.06474 4.60498 4.62970 4.67891 4.92148 5.06421 5.11232 5.26664 5.49921 5.63973 5.70047 5.74528 5.82413 5.86901 6.01986 6.13377 6.20396 6.29168 6.35083 6.53373 6.59428 6.65984 6.75680 6.91380 7.11460 7.21670 7.38143 7.94843 8.07848 8.14272 8.93263 10.27299 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.026257 B = 0.006218 C = 0.005819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.122788 B = 4501.774684 C = 4810.711834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.234 3.766 3 C 0.047 3.953 4 O -0.553 6.553 5 N -1.120 6.120 6 S 2.715 3.285 7 O -1.011 7.011 8 O -1.005 7.005 9 C -1.021 5.021 10 H 0.120 0.880 11 C 0.132 3.868 12 N -0.847 5.847 13 Si 0.919 3.081 14 H -0.268 1.268 15 H -0.277 1.277 16 H -0.264 1.264 17 C -0.061 4.061 18 C -0.118 4.118 19 C -0.124 4.124 20 C -0.130 4.130 21 C -0.122 4.122 22 C -0.099 4.099 23 H 0.114 0.886 24 H 0.064 0.936 25 H 0.059 0.941 26 H 0.045 0.955 27 H 0.089 0.911 28 H 0.372 0.628 29 H 0.402 0.598 30 H 0.289 0.711 31 H 0.125 0.875 32 H 0.118 0.882 33 H 0.116 0.884 34 H 0.119 0.881 35 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.787 -0.871 14.732 14.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.144 3.856 3 C -0.032 4.032 4 O -0.357 6.357 5 N -0.875 5.875 6 S 2.815 3.185 7 O -1.001 7.001 8 O -0.995 6.995 9 C -1.154 5.154 10 H 0.138 0.862 11 C -0.085 4.085 12 N -0.477 5.477 13 Si 0.743 3.257 14 H -0.194 1.194 15 H -0.202 1.202 16 H -0.188 1.188 17 C -0.062 4.062 18 C -0.136 4.136 19 C -0.142 4.142 20 C -0.148 4.148 21 C -0.140 4.140 22 C -0.117 4.117 23 H 0.133 0.867 24 H 0.084 0.916 25 H 0.078 0.922 26 H 0.063 0.937 27 H 0.107 0.893 28 H 0.218 0.782 29 H 0.235 0.765 30 H 0.099 0.901 31 H 0.142 0.858 32 H 0.136 0.864 33 H 0.134 0.866 34 H 0.137 0.863 35 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 0.937 -1.872 13.889 14.046 hybrid contribution 1.179 1.623 0.162 2.013 sum 2.115 -0.249 14.051 14.212 Atomic orbital electron populations 1.22778 0.92595 1.03973 1.05047 1.18797 0.93561 0.89895 0.83367 1.23033 0.82642 0.96127 1.01434 1.86500 1.19428 1.32899 1.96912 1.56025 1.66787 1.42280 1.22374 1.00361 0.73557 0.75595 0.68964 1.93363 1.77129 1.70222 1.59416 1.93287 1.33112 1.87920 1.85151 1.30909 1.48616 1.25965 1.09904 0.86214 1.24762 0.91055 0.99398 0.93313 1.69913 1.32933 1.38964 1.05870 0.86204 0.79518 0.81059 0.78904 1.19352 1.20235 1.18842 1.19911 0.95099 0.96804 0.94435 1.21066 0.99998 1.00248 0.92288 1.21047 0.96881 0.98163 0.98096 1.21072 0.96115 0.99933 0.97713 1.21122 0.99883 0.99963 0.93004 1.21049 0.95653 0.96252 0.98778 0.86750 0.91645 0.92222 0.93684 0.89309 0.78177 0.76525 0.90059 0.85756 0.86414 0.86618 0.86329 0.85475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.20 7.51 37.16 0.28 -2.92 16 2 C 0.23 4.15 0.76 -132.97 -0.10 4.05 16 3 C 0.05 0.80 4.95 37.16 0.18 0.98 16 4 O -0.55 -9.36 11.45 -35.23 -0.40 -9.76 16 5 N -1.12 -22.98 5.12 -0.40 0.00 -22.99 16 6 S 2.71 71.03 4.89 -107.50 -0.53 70.50 16 7 O -1.01 -30.12 18.02 -57.17 -1.03 -31.15 16 8 O -1.00 -27.80 14.57 -57.17 -0.83 -28.63 16 9 C -1.02 -26.74 7.66 30.60 0.23 -26.51 16 10 H 0.12 2.81 4.40 -52.49 -0.23 2.58 16 11 C 0.13 3.57 5.46 -17.82 -0.10 3.47 16 12 N -0.85 -24.44 13.19 55.43 0.73 -23.71 16 13 Si 0.92 19.90 29.54 -169.99 -5.02 14.88 16 14 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 15 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 16 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 17 C -0.06 -0.95 4.58 -104.62 -0.48 -1.43 16 18 C -0.12 -1.57 9.15 -39.58 -0.36 -1.93 16 19 C -0.12 -1.46 10.05 -39.58 -0.40 -1.85 16 20 C -0.13 -1.52 10.05 -39.58 -0.40 -1.91 16 21 C -0.12 -1.56 10.05 -39.58 -0.40 -1.95 16 22 C -0.10 -1.49 8.99 -39.58 -0.36 -1.85 16 23 H 0.11 2.32 5.35 -51.93 -0.28 2.05 16 24 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 25 H 0.06 0.81 6.52 -51.93 -0.34 0.47 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.09 1.70 5.55 -51.93 -0.29 1.42 16 28 H 0.37 4.87 9.11 45.56 0.41 5.28 16 29 H 0.40 7.56 6.46 -34.47 -0.22 7.33 16 30 H 0.29 7.54 8.31 -40.82 -0.34 7.21 16 31 H 0.12 1.45 6.34 -52.49 -0.33 1.11 16 32 H 0.12 1.08 8.06 -52.48 -0.42 0.66 16 33 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 34 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 35 H 0.13 1.96 6.37 -52.49 -0.33 1.63 16 LS Contribution 296.17 15.07 4.46 4.46 Total: -1.00 -34.52 296.17 -7.37 -41.90 By element: Atomic # 1 Polarization: 19.22 SS G_CDS: -2.86 Total: 16.36 kcal Atomic # 6 Polarization: -29.97 SS G_CDS: -1.89 Total: -31.86 kcal Atomic # 7 Polarization: -47.42 SS G_CDS: 0.73 Total: -46.69 kcal Atomic # 8 Polarization: -67.27 SS G_CDS: -2.27 Total: -69.54 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.88 kcal Atomic # 16 Polarization: 71.03 SS G_CDS: -0.53 Total: 70.50 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -34.52 -7.37 -41.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125587945.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.934 kcal (2) G-P(sol) polarization free energy of solvation -34.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds