Wall clock time and date at job start Tue Mar 31 2020 05:29:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.46954 * 2 1 4 4 O 1.42899 * 109.46917 * 179.97438 * 3 2 1 5 5 N 1.46495 * 109.47027 * 120.00042 * 2 1 3 6 6 S 1.65595 * 120.00243 * 307.03555 * 5 2 1 7 7 O 1.42101 * 106.40548 * 178.26697 * 6 5 2 8 8 O 1.42104 * 106.40113 * 311.18537 * 6 5 2 9 9 C 1.76197 * 107.21989 * 64.72278 * 6 5 2 10 10 H 1.07998 * 120.00155 * 0.02562 * 9 6 5 11 11 C 1.37875 * 120.00288 * 180.02562 * 9 6 5 12 12 N 1.31519 * 119.99746 * 0.02562 * 11 9 6 13 13 Si 1.86800 * 120.00298 * 180.02562 * 11 9 6 14 14 H 1.48496 * 109.47043 * 59.99887 * 13 11 9 15 15 H 1.48499 * 109.47277 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47010 * 300.00002 * 13 11 9 17 17 C 1.50700 * 109.46954 * 240.00130 * 2 1 3 18 18 C 1.38234 * 119.99941 * 215.73111 * 17 2 1 19 19 C 1.38233 * 119.99945 * 179.76831 * 18 17 2 20 20 C 1.38235 * 120.00346 * 0.50450 * 19 18 17 21 21 C 1.38238 * 119.99657 * 359.74960 * 20 19 18 22 22 C 1.38238 * 120.00003 * 359.97438 * 21 20 19 23 23 H 1.08999 * 109.47433 * 299.99945 * 1 2 3 24 24 H 1.09001 * 109.47080 * 60.00043 * 1 2 3 25 25 H 1.09001 * 109.47169 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47192 * 299.99889 * 3 2 1 27 27 H 1.08998 * 109.47447 * 60.00095 * 3 2 1 28 28 H 0.96700 * 113.99847 * 180.02562 * 4 3 2 29 29 H 0.97004 * 119.99886 * 126.75933 * 5 2 1 30 30 H 0.97003 * 119.99870 * 179.97438 * 12 11 9 31 31 H 1.07997 * 119.99670 * 359.97438 * 18 17 2 32 32 H 1.08006 * 119.99829 * 180.23032 * 19 18 17 33 33 H 1.07995 * 120.00562 * 179.72716 * 20 19 18 34 34 H 1.07992 * 119.99961 * 179.97438 * 21 20 19 35 35 H 1.07996 * 120.00217 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4689 1.4425 0.0006 5 7 2.0183 -0.6906 1.1961 6 16 1.4800 -0.2335 2.6939 7 8 2.0987 -1.1086 3.6271 8 8 1.6076 1.1806 2.7519 9 6 -0.2465 -0.5801 2.7558 10 1 -0.7412 -1.0140 1.8995 11 6 -0.9659 -0.2974 3.8975 12 7 -0.3636 0.2315 4.9402 13 14 -2.7961 -0.6655 3.9634 14 1 -3.0167 -2.1185 3.7510 15 1 -3.3328 -0.2717 5.2909 16 1 -3.4939 0.1017 2.9005 17 6 2.0323 -0.7104 -1.2305 18 6 3.1789 -1.4797 -1.1648 19 6 3.6370 -2.1352 -2.2923 20 6 2.9543 -2.0130 -3.4881 21 6 1.8106 -1.2394 -3.5551 22 6 1.3493 -0.5885 -2.4262 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.6766 1.9563 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 3.8622 2.3259 0.0010 29 1 2.6540 -1.4183 1.1105 30 1 -0.8698 0.4307 5.7433 31 1 3.7149 -1.5713 -0.2317 32 1 4.5308 -2.7393 -2.2400 33 1 3.3147 -2.5215 -4.3701 34 1 1.2775 -1.1436 -4.4894 35 1 0.4561 0.0162 -2.4786 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000125588188.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:51 Heat of formation + Delta-G solvation = -104.934700 kcal Electronic energy + Delta-G solvation = -21489.325185 eV Core-core repulsion = 18193.164207 eV Total energy + Delta-G solvation = -3296.160978 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.087 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.67123 -37.04133 -35.14597 -34.76616 -33.92297 -33.14288 -31.19569 -30.26773 -28.91859 -26.56404 -25.26222 -22.99421 -22.17718 -19.85599 -18.82057 -17.62548 -17.13648 -16.81948 -15.90355 -15.49658 -14.93582 -14.83066 -14.39460 -14.04993 -13.78455 -13.72815 -13.30159 -13.11756 -12.67605 -12.20542 -12.07436 -11.96275 -11.73387 -11.43450 -11.20120 -10.93543 -10.76448 -10.59752 -10.51558 -10.27967 -10.23703 -10.14849 -9.24917 -9.16119 -9.01303 -8.74055 -8.62326 -8.38037 -6.70253 -5.30000 1.52429 1.57912 2.37564 3.07236 3.12616 3.17802 3.95322 4.05956 4.58601 4.59733 4.66101 4.92405 5.06360 5.11456 5.26319 5.49149 5.62887 5.70306 5.73831 5.78477 5.89163 5.96715 6.13178 6.20746 6.29057 6.38754 6.56413 6.60368 6.66339 6.77926 6.82382 7.04740 7.17957 7.32996 7.91976 7.99673 8.08887 8.88492 10.23796 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.023254 B = 0.006263 C = 0.005692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.805069 B = 4469.699433 C = 4918.129224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.234 3.766 3 C 0.050 3.950 4 O -0.563 6.563 5 N -1.122 6.122 6 S 2.718 3.282 7 O -1.010 7.010 8 O -1.004 7.004 9 C -1.026 5.026 10 H 0.112 0.888 11 C 0.134 3.866 12 N -0.844 5.844 13 Si 0.917 3.083 14 H -0.264 1.264 15 H -0.277 1.277 16 H -0.263 1.263 17 C -0.059 4.059 18 C -0.098 4.098 19 C -0.121 4.121 20 C -0.130 4.130 21 C -0.123 4.123 22 C -0.118 4.118 23 H 0.105 0.895 24 H 0.064 0.936 25 H 0.074 0.926 26 H 0.042 0.958 27 H 0.097 0.903 28 H 0.372 0.628 29 H 0.402 0.598 30 H 0.291 0.709 31 H 0.125 0.875 32 H 0.119 0.881 33 H 0.116 0.884 34 H 0.118 0.882 35 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.144 -0.503 -14.574 14.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.144 3.856 3 C -0.029 4.029 4 O -0.367 6.367 5 N -0.877 5.877 6 S 2.818 3.182 7 O -1.000 7.000 8 O -0.994 6.994 9 C -1.159 5.159 10 H 0.130 0.870 11 C -0.084 4.084 12 N -0.474 5.474 13 Si 0.741 3.259 14 H -0.189 1.189 15 H -0.202 1.202 16 H -0.188 1.188 17 C -0.060 4.060 18 C -0.117 4.117 19 C -0.139 4.139 20 C -0.148 4.148 21 C -0.141 4.141 22 C -0.136 4.136 23 H 0.124 0.876 24 H 0.083 0.917 25 H 0.093 0.907 26 H 0.060 0.940 27 H 0.115 0.885 28 H 0.217 0.783 29 H 0.235 0.765 30 H 0.101 0.899 31 H 0.143 0.857 32 H 0.137 0.863 33 H 0.134 0.866 34 H 0.136 0.864 35 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 2.490 -0.550 -13.671 13.907 hybrid contribution -1.121 -0.179 -0.283 1.170 sum 1.369 -0.730 -13.954 14.040 Atomic orbital electron populations 1.22886 0.92743 1.04233 1.04837 1.18782 0.93483 0.89964 0.83409 1.23135 0.81688 0.95984 1.02105 1.86439 1.19579 1.32834 1.97828 1.56083 1.59848 1.48843 1.22886 1.00326 0.75890 0.72978 0.69021 1.93365 1.79378 1.67835 1.59465 1.93287 1.88634 1.32561 1.84898 1.30903 1.19853 1.56873 1.08275 0.86993 1.24740 1.01116 0.89551 0.93037 1.69901 1.38820 1.34548 1.04116 0.86251 0.81583 0.79827 0.78228 1.18906 1.20214 1.18800 1.19877 0.95068 0.96637 0.94408 1.20984 0.95736 0.96323 0.98638 1.21108 0.99921 0.99915 0.92988 1.21066 0.96236 0.99879 0.97667 1.21043 0.96884 0.98108 0.98078 1.21055 0.99986 1.00309 0.92254 0.87631 0.91716 0.90687 0.94019 0.88508 0.78289 0.76460 0.89887 0.85748 0.86337 0.86610 0.86408 0.85768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.23 6.45 37.16 0.24 -2.99 16 2 C 0.23 4.18 0.76 -132.98 -0.10 4.08 16 3 C 0.05 0.87 5.68 37.16 0.21 1.08 16 4 O -0.56 -9.48 13.03 -35.23 -0.46 -9.94 16 5 N -1.12 -23.13 5.28 -0.41 0.00 -23.13 16 6 S 2.72 71.19 4.71 -107.50 -0.51 70.68 16 7 O -1.01 -30.06 18.02 -57.17 -1.03 -31.09 16 8 O -1.00 -27.88 15.02 -57.17 -0.86 -28.74 16 9 C -1.03 -26.96 7.35 30.60 0.23 -26.74 16 10 H 0.11 2.63 5.41 -52.49 -0.28 2.35 16 11 C 0.13 3.61 5.46 -17.82 -0.10 3.51 16 12 N -0.84 -24.33 13.19 55.43 0.73 -23.60 16 13 Si 0.92 19.99 29.54 -169.99 -5.02 14.96 16 14 H -0.26 -5.64 7.11 56.52 0.40 -5.24 16 15 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 16 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 17 C -0.06 -0.92 4.48 -104.62 -0.47 -1.39 16 18 C -0.10 -1.50 8.95 -39.58 -0.35 -1.85 16 19 C -0.12 -1.56 10.05 -39.58 -0.40 -1.96 16 20 C -0.13 -1.53 10.05 -39.58 -0.40 -1.93 16 21 C -0.12 -1.46 10.05 -39.58 -0.40 -1.86 16 22 C -0.12 -1.59 9.15 -39.58 -0.36 -1.95 16 23 H 0.11 2.07 5.40 -51.93 -0.28 1.79 16 24 H 0.06 0.87 6.52 -51.93 -0.34 0.53 16 25 H 0.07 1.25 7.35 -51.93 -0.38 0.87 16 26 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.10 1.95 5.54 -51.93 -0.29 1.66 16 28 H 0.37 4.61 9.12 45.56 0.42 5.03 16 29 H 0.40 7.61 6.32 -34.47 -0.22 7.39 16 30 H 0.29 7.58 8.31 -40.82 -0.34 7.24 16 31 H 0.12 1.92 6.25 -52.49 -0.33 1.59 16 32 H 0.12 1.26 8.06 -52.48 -0.42 0.84 16 33 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 34 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 35 H 0.12 1.46 6.36 -52.49 -0.33 1.12 16 LS Contribution 297.44 15.07 4.48 4.48 Total: -1.00 -34.78 297.44 -7.43 -42.21 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: -2.86 Total: 16.16 kcal Atomic # 6 Polarization: -30.10 SS G_CDS: -1.90 Total: -32.00 kcal Atomic # 7 Polarization: -47.46 SS G_CDS: 0.73 Total: -46.73 kcal Atomic # 8 Polarization: -67.42 SS G_CDS: -2.35 Total: -69.77 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.96 kcal Atomic # 16 Polarization: 71.19 SS G_CDS: -0.51 Total: 70.68 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -34.78 -7.43 -42.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125588188.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.726 kcal (2) G-P(sol) polarization free energy of solvation -34.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds