Wall clock time and date at job start Tue Mar 31 2020 05:21:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50703 * 120.00307 * 2 1 4 4 N 1.46494 * 109.47623 * 124.99691 * 3 2 1 5 5 C 1.38990 * 120.00184 * 179.97438 * 4 3 2 6 6 N 1.29581 * 125.40388 * 359.97438 * 5 4 3 7 7 N 1.37766 * 115.62306 * 179.75558 * 6 5 4 8 8 C 1.29646 * 115.60885 * 0.50362 * 7 6 5 9 9 S 1.76193 * 125.41277 * 179.79900 * 8 7 6 10 10 C 1.81391 * 103.00267 * 359.68884 * 9 8 7 11 11 C 1.53006 * 109.47235 * 180.02562 * 10 9 8 12 12 C 1.52997 * 109.47127 * 180.02562 * 11 10 9 13 13 C 1.50696 * 109.47055 * 179.97438 * 12 11 10 14 14 H 1.08000 * 120.00290 * 0.02562 * 13 12 11 15 15 C 1.37887 * 120.00079 * 179.97438 * 13 12 11 16 16 N 1.31514 * 119.99907 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 119.99654 * 0.02562 * 15 13 12 18 18 H 1.48499 * 109.47022 * 89.99986 * 17 15 13 19 19 H 1.48502 * 109.46769 * 209.99494 * 17 15 13 20 20 H 1.48495 * 109.47280 * 329.99669 * 17 15 13 21 21 S 1.76044 * 125.40522 * 179.97438 * 5 4 3 22 22 H 1.08001 * 119.99968 * 359.97438 * 1 2 3 23 23 H 1.07996 * 119.99833 * 180.02562 * 1 2 3 24 24 H 1.07996 * 120.00229 * 179.97438 * 2 1 3 25 25 H 1.09003 * 109.46531 * 4.99577 * 3 2 1 26 26 H 1.08998 * 109.47022 * 245.00273 * 3 2 1 27 27 H 0.97002 * 119.99803 * 0.02562 * 4 3 2 28 28 H 1.09001 * 109.47423 * 60.00502 * 10 9 8 29 29 H 1.09001 * 109.47260 * 300.00365 * 10 9 8 30 30 H 1.09001 * 109.47002 * 299.99604 * 11 10 9 31 31 H 1.08993 * 109.46955 * 60.00042 * 11 10 9 32 32 H 1.09001 * 109.47289 * 299.99953 * 12 11 10 33 33 H 1.09004 * 109.47261 * 59.99697 * 12 11 10 34 34 H 0.96999 * 119.99682 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9938 1.3320 1.1314 5 6 3.8036 2.4423 1.3391 6 7 3.8222 3.5067 0.6002 7 7 4.7023 4.4905 0.9947 8 6 5.4071 4.2219 2.0491 9 16 6.6087 5.2881 2.7728 10 6 6.5720 6.7408 1.6872 11 6 7.5785 7.7781 2.1890 12 6 7.5470 9.0037 1.2737 13 6 8.5380 10.0256 1.7683 14 1 9.1313 9.8213 2.6473 15 6 8.6880 11.2212 1.0980 16 7 9.5532 12.1128 1.5294 17 14 7.6624 11.5744 -0.4228 18 1 6.3980 12.2427 -0.0229 19 1 8.4236 12.4624 -1.3379 20 1 7.3503 10.2991 -1.1165 21 16 4.9668 2.6259 2.6477 22 1 -0.5400 0.9353 0.0004 23 1 -0.5400 -0.9353 0.0004 24 1 1.8500 -0.9352 0.0004 25 1 1.3586 2.1316 0.0895 26 1 2.6213 1.4026 -0.9314 27 1 3.0451 0.5745 1.7352 28 1 5.5713 7.1730 1.6923 29 1 6.8337 6.4425 0.6720 30 1 7.3171 8.0766 3.2042 31 1 8.5790 7.3458 2.1835 32 1 7.8081 8.7057 0.2582 33 1 6.5464 9.4359 1.2795 34 1 9.6585 12.9541 1.0580 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126608805.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:48 Heat of formation + Delta-G solvation = 72.770734 kcal Electronic energy + Delta-G solvation = -16324.258965 eV Core-core repulsion = 13510.849495 eV Total energy + Delta-G solvation = -2813.409470 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 285.066 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.54961 -37.22206 -34.66691 -33.94392 -32.11461 -30.70151 -28.08080 -26.91909 -24.68740 -23.27599 -21.25195 -20.74933 -20.28888 -19.36834 -17.32084 -17.01141 -16.62402 -15.96902 -15.52902 -15.01638 -14.69518 -14.42186 -13.94914 -13.90906 -13.40307 -13.24352 -12.61335 -12.27231 -12.19708 -11.73289 -11.58686 -11.46506 -10.98906 -10.87545 -10.59249 -10.28946 -10.07955 -9.98888 -9.78492 -9.70262 -9.64771 -9.23061 -8.86627 -8.54672 -7.66795 -6.05210 -4.04076 0.21644 0.68585 0.93221 1.27857 1.57655 2.21064 2.29853 2.84873 3.32300 3.39880 3.44060 4.17988 4.45232 4.47250 4.51019 4.98644 5.01890 5.20980 5.25732 5.27658 5.35615 5.40518 5.93735 5.94336 6.02110 6.29488 6.31600 6.42445 6.71089 6.75202 7.21585 7.34310 7.75301 7.90825 8.50909 8.98877 9.56574 11.07899 Molecular weight = 285.07amu Principal moments of inertia in cm(-1) A = 0.030546 B = 0.002732 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.415606 B =10245.469107 C =11094.925185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.180 4.180 3 C 0.160 3.840 4 N -0.687 5.687 5 C 0.311 3.689 6 N -0.355 5.355 7 N -0.261 5.261 8 C 0.027 3.973 9 S -0.001 6.001 10 C -0.097 4.097 11 C -0.089 4.089 12 C -0.006 4.006 13 C -0.522 4.522 14 H 0.074 0.926 15 C 0.067 3.933 16 N -0.902 5.902 17 Si 0.879 3.121 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.264 1.264 21 S 0.057 5.943 22 H 0.102 0.898 23 H 0.105 0.895 24 H 0.117 0.883 25 H 0.074 0.926 26 H 0.078 0.922 27 H 0.416 0.584 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.020 0.980 33 H 0.016 0.984 34 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.553 -26.884 0.579 31.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.199 4.199 3 C 0.035 3.965 4 N -0.330 5.330 5 C -0.072 4.072 6 N -0.192 5.192 7 N -0.089 5.089 8 C -0.373 4.373 9 S 0.228 5.772 10 C -0.247 4.247 11 C -0.129 4.129 12 C -0.045 4.045 13 C -0.560 4.560 14 H 0.092 0.908 15 C -0.134 4.134 16 N -0.540 5.540 17 Si 0.706 3.294 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.189 1.189 21 S 0.290 5.710 22 H 0.120 0.880 23 H 0.123 0.877 24 H 0.135 0.865 25 H 0.092 0.908 26 H 0.096 0.904 27 H 0.254 0.746 28 H 0.111 0.889 29 H 0.111 0.889 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.038 0.962 33 H 0.034 0.966 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -15.085 -26.593 0.949 30.588 hybrid contribution -1.286 0.071 -1.675 2.113 sum -16.371 -26.522 -0.726 31.176 Atomic orbital electron populations 1.24037 0.95731 1.02667 0.97205 1.22957 0.96229 0.97918 1.02757 1.20524 0.91185 0.95894 0.88851 1.43831 1.41178 1.15430 1.32584 1.25935 0.94507 0.92732 0.94045 1.75117 1.20130 0.98608 1.25327 1.75479 1.03992 1.19187 1.10262 1.30488 1.06169 1.00239 1.00383 1.85737 1.40605 1.13328 1.37489 1.24055 1.05695 0.94074 1.00892 1.21358 0.96452 0.94192 1.00895 1.19564 0.97406 0.92484 0.95091 1.21079 1.21454 0.99824 1.13666 0.90838 1.25017 0.95055 0.96013 0.97333 1.69909 1.35482 1.08063 1.40582 0.86790 0.80491 0.78654 0.83467 1.20231 1.21346 1.18882 1.85508 1.38632 1.15247 1.31588 0.87967 0.87659 0.86509 0.90780 0.90353 0.74636 0.88860 0.88864 0.91444 0.91416 0.96176 0.96613 0.92678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.66 14.32 29.01 0.42 -0.25 16 2 C -0.18 -0.85 9.63 -36.02 -0.35 -1.19 16 3 C 0.16 1.14 6.42 -5.20 -0.03 1.11 16 4 N -0.69 -5.44 5.72 -62.01 -0.35 -5.79 16 5 C 0.31 3.66 8.42 -87.39 -0.74 2.92 16 6 N -0.35 -5.43 11.68 30.85 0.36 -5.07 16 7 N -0.26 -4.36 11.62 31.11 0.36 -4.00 16 8 C 0.03 0.40 7.82 51.84 0.41 0.81 16 9 S 0.00 -0.02 22.16 -107.50 -2.38 -2.40 16 10 C -0.10 -1.61 5.54 37.16 0.21 -1.40 16 11 C -0.09 -1.70 5.16 -26.73 -0.14 -1.84 16 12 C -0.01 -0.14 4.04 -27.89 -0.11 -0.25 16 13 C -0.52 -14.75 9.66 -34.44 -0.33 -15.09 16 14 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 15 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 16 N -0.90 -27.77 13.96 55.43 0.77 -26.99 16 17 Si 0.88 21.80 27.47 -169.99 -4.67 17.13 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 20 H -0.26 -6.32 6.54 56.52 0.37 -5.95 16 21 S 0.06 0.64 23.39 -107.50 -2.51 -1.88 16 22 H 0.10 0.43 7.84 -52.49 -0.41 0.02 16 23 H 0.11 0.30 8.06 -52.49 -0.42 -0.12 16 24 H 0.12 0.41 8.06 -52.49 -0.42 -0.01 16 25 H 0.07 0.59 7.79 -51.93 -0.40 0.19 16 26 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.42 2.16 8.59 -40.82 -0.35 1.81 16 28 H 0.09 1.55 8.14 -51.92 -0.42 1.12 16 29 H 0.09 1.55 8.14 -51.92 -0.42 1.13 16 30 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 31 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 32 H 0.02 0.47 7.20 -51.93 -0.37 0.10 16 33 H 0.02 0.36 7.57 -51.93 -0.39 -0.03 16 34 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 325.36 15.07 4.90 4.90 Total: -1.00 -32.45 325.36 -8.77 -41.22 By element: Atomic # 1 Polarization: 0.67 SS G_CDS: -4.48 Total: -3.81 kcal Atomic # 6 Polarization: -12.55 SS G_CDS: -0.77 Total: -13.32 kcal Atomic # 7 Polarization: -42.99 SS G_CDS: 1.14 Total: -41.85 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.67 Total: 17.13 kcal Atomic # 16 Polarization: 0.62 SS G_CDS: -4.90 Total: -4.28 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -32.45 -8.77 -41.22 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126608805.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.994 kcal (2) G-P(sol) polarization free energy of solvation -32.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds