Wall clock time and date at job start Tue Mar 31 2020 05:34:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46495 * 109.47247 * 2 1 4 4 C 1.46506 * 119.99753 * 84.99906 * 3 2 1 5 5 C 1.50703 * 109.47289 * 275.00143 * 4 3 2 6 6 H 1.07994 * 119.99399 * 0.02562 * 5 4 3 7 7 C 1.37874 * 119.99789 * 179.97438 * 5 4 3 8 8 N 1.31518 * 120.00144 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99733 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.46762 * 60.00562 * 9 7 5 11 11 H 1.48506 * 109.46725 * 180.02562 * 9 7 5 12 12 H 1.48494 * 109.47116 * 300.00217 * 9 7 5 13 13 S 1.65602 * 120.00241 * 265.00554 * 3 2 1 14 14 O 1.42097 * 106.40599 * 23.53509 * 13 3 2 15 15 O 1.42097 * 106.40158 * 156.46000 * 13 3 2 16 16 C 1.76208 * 107.21383 * 269.99567 * 13 3 2 17 17 C 1.38163 * 120.02554 * 115.00210 * 16 13 3 18 18 C 1.38244 * 120.05726 * 179.97438 * 17 16 13 19 19 C 1.38286 * 120.10978 * 0.02562 * 18 17 16 20 20 C 1.38125 * 120.05447 * 0.02562 * 19 18 17 21 21 C 1.38712 * 120.02777 * 294.72258 * 16 13 3 22 22 O 1.35897 * 120.05888 * 0.02562 * 21 16 13 23 23 H 1.09004 * 109.47465 * 59.99972 * 1 2 3 24 24 H 1.08999 * 109.47274 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47072 * 299.99950 * 1 2 3 26 26 H 1.09002 * 109.46951 * 240.00588 * 2 1 3 27 27 H 1.08998 * 109.46978 * 120.00530 * 2 1 3 28 28 H 1.09001 * 109.47060 * 35.00593 * 4 3 2 29 29 H 1.09004 * 109.47073 * 155.00082 * 4 3 2 30 30 H 0.96997 * 119.99752 * 179.97438 * 8 7 5 31 31 H 1.08004 * 119.97191 * 359.97438 * 17 16 13 32 32 H 1.08002 * 119.94268 * 179.97438 * 18 17 16 33 33 H 1.08003 * 119.97452 * 180.02562 * 19 18 17 34 34 H 1.08005 * 120.02564 * 179.97438 * 20 19 18 35 35 H 0.96702 * 114.00294 * 89.99444 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1582 2.1086 1.2640 5 6 0.8360 2.7288 1.6357 6 1 -0.0227 2.5941 0.9948 7 6 0.7224 3.4671 2.7945 8 7 1.7681 3.6306 3.5753 9 14 -0.9164 4.2364 3.2550 10 1 -1.9383 3.1698 3.4075 11 1 -0.7745 4.9736 4.5363 12 1 -1.3388 5.1776 2.1869 13 16 2.4121 2.1202 -1.4287 14 8 1.6868 1.4416 -2.4448 15 8 2.3056 3.5186 -1.1997 16 6 4.1170 1.7941 -1.7320 17 6 4.4918 1.0305 -2.8207 18 6 5.8292 0.7747 -3.0595 19 6 6.7950 1.2817 -2.2096 20 6 6.4254 2.0448 -1.1192 21 6 5.0842 2.3087 -0.8812 22 8 4.7184 3.0644 0.1874 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 2.4690 1.4182 2.0481 29 1 2.9080 2.8918 1.1514 30 1 1.6882 4.1504 4.3903 31 1 3.7393 0.6330 -3.4857 32 1 6.1200 0.1771 -3.9109 33 1 7.8392 1.0808 -2.3985 34 1 7.1801 2.4402 -0.4555 35 1 4.5620 2.5550 0.9944 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127819771.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:07 Heat of formation + Delta-G solvation = -82.892304 kcal Electronic energy + Delta-G solvation = -21476.139778 eV Core-core repulsion = 18180.934630 eV Total energy + Delta-G solvation = -3295.205148 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.087 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.65125 -37.02126 -36.38204 -35.87809 -35.08180 -32.59831 -31.24611 -29.85785 -29.73268 -26.76313 -23.24211 -22.84401 -22.64890 -21.82131 -18.82146 -18.24971 -17.11802 -16.77729 -16.30109 -15.86681 -15.44105 -15.09358 -14.61023 -14.35729 -13.94621 -13.71429 -13.08209 -13.01434 -12.58487 -12.43953 -12.19601 -11.98698 -11.69459 -11.48152 -11.36878 -11.17113 -11.05066 -10.98585 -10.95755 -10.45067 -10.35917 -10.14215 -9.91155 -9.58488 -9.37538 -8.76261 -8.41228 -8.11392 -6.06848 -4.08349 0.77071 1.10154 1.22097 3.34801 3.34989 3.38764 3.43920 3.75981 4.18643 4.35551 4.45908 4.69362 4.85467 5.05065 5.21958 5.28099 5.41458 5.47529 5.63221 5.81761 5.84967 5.94682 6.06667 6.12638 6.19520 6.26711 6.39218 6.68447 6.71593 6.98709 7.11120 7.37700 7.57740 7.72173 7.91442 8.20317 8.92037 9.55867 11.02200 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.022692 B = 0.006584 C = 0.005744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.639987 B = 4251.410506 C = 4873.534434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.133 3.867 3 N -0.985 5.985 4 C 0.241 3.759 5 C -0.523 4.523 6 H 0.063 0.937 7 C 0.063 3.937 8 N -0.897 5.897 9 Si 0.895 3.105 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.275 1.275 13 S 2.687 3.313 14 O -0.978 6.978 15 O -0.928 6.928 16 C -0.707 4.707 17 C -0.012 4.012 18 C -0.160 4.160 19 C -0.058 4.058 20 C -0.172 4.172 21 C 0.215 3.785 22 O -0.485 6.485 23 H 0.054 0.946 24 H 0.051 0.949 25 H 0.079 0.921 26 H 0.062 0.938 27 H 0.072 0.928 28 H 0.035 0.965 29 H 0.056 0.944 30 H 0.264 0.736 31 H 0.143 0.857 32 H 0.130 0.870 33 H 0.130 0.870 34 H 0.136 0.864 35 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.674 -8.712 -8.326 14.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.007 3.993 3 N -0.825 5.825 4 C 0.120 3.880 5 C -0.562 4.562 6 H 0.081 0.919 7 C -0.139 4.139 8 N -0.536 5.536 9 Si 0.723 3.277 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.200 1.200 13 S 2.773 3.227 14 O -0.968 6.968 15 O -0.918 6.918 16 C -0.791 4.791 17 C -0.031 4.031 18 C -0.178 4.178 19 C -0.076 4.076 20 C -0.192 4.192 21 C 0.168 3.832 22 O -0.301 6.301 23 H 0.073 0.927 24 H 0.070 0.930 25 H 0.098 0.902 26 H 0.080 0.920 27 H 0.090 0.910 28 H 0.053 0.947 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.161 0.839 32 H 0.148 0.852 33 H 0.148 0.852 34 H 0.154 0.846 35 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges 8.279 -7.691 -9.026 14.462 hybrid contribution -0.122 -0.144 0.854 0.875 sum 8.157 -7.835 -8.171 13.953 Atomic orbital electron populations 1.22261 0.96169 1.00919 1.03811 1.21005 0.95035 0.82033 1.01239 1.57550 1.78039 1.23210 1.23740 1.19399 0.98585 0.91282 0.78718 1.21422 0.96146 1.31927 1.06716 0.91863 1.24898 0.96876 0.95930 0.96225 1.69873 1.29290 1.40713 1.13724 0.86601 0.83847 0.79568 0.77717 1.20235 1.21255 1.20001 1.02297 0.73352 0.74156 0.72852 1.93489 1.69508 1.76182 1.57617 1.93634 1.85037 1.28770 1.84391 1.31838 1.27755 1.12565 1.06934 1.20896 0.97131 0.91532 0.93541 1.21245 0.92990 1.02722 1.00876 1.21275 0.99679 0.93854 0.92779 1.21559 0.95726 1.01476 1.00400 1.18009 0.91111 0.86141 0.87932 1.85042 1.89531 1.35138 1.20373 0.92694 0.93023 0.90200 0.91968 0.90985 0.94700 0.92696 0.92661 0.83894 0.85187 0.85216 0.84638 0.72981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.97 9.83 37.16 0.37 -2.61 16 2 C 0.13 2.24 6.09 -4.05 -0.02 2.21 16 3 N -0.98 -19.69 2.80 -115.66 -0.32 -20.01 16 4 C 0.24 5.61 4.41 -5.19 -0.02 5.59 16 5 C -0.52 -14.02 8.41 -34.44 -0.29 -14.31 16 6 H 0.06 1.71 6.89 -52.49 -0.36 1.34 16 7 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 8 N -0.90 -25.12 13.29 55.43 0.74 -24.38 16 9 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 13 S 2.69 54.83 5.20 -107.50 -0.56 54.27 16 14 O -0.98 -20.13 15.94 -57.17 -0.91 -21.04 16 15 O -0.93 -23.02 16.26 -62.57 -1.02 -24.04 16 16 C -0.71 -12.09 5.92 -39.43 -0.23 -12.32 16 17 C -0.01 -0.17 9.55 -39.61 -0.38 -0.55 16 18 C -0.16 -1.83 10.04 -39.56 -0.40 -2.23 16 19 C -0.06 -0.64 10.04 -39.61 -0.40 -1.03 16 20 C -0.17 -2.28 9.99 -39.43 -0.39 -2.67 16 21 C 0.21 3.56 6.65 -39.22 -0.26 3.30 16 22 O -0.48 -8.86 10.63 -29.44 -0.31 -9.18 16 23 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 24 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.08 1.54 6.59 -51.93 -0.34 1.20 16 26 H 0.06 0.91 7.61 -51.93 -0.40 0.51 16 27 H 0.07 1.09 8.00 -51.93 -0.42 0.68 16 28 H 0.04 0.80 8.00 -51.93 -0.42 0.39 16 29 H 0.06 1.33 4.33 -51.93 -0.22 1.10 16 30 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 31 H 0.14 1.86 7.33 -52.48 -0.38 1.47 16 32 H 0.13 1.07 8.06 -52.49 -0.42 0.64 16 33 H 0.13 0.98 8.06 -52.48 -0.42 0.56 16 34 H 0.14 1.50 8.06 -52.48 -0.42 1.07 16 35 H 0.41 6.48 6.99 45.56 0.32 6.80 16 LS Contribution 305.88 15.07 4.61 4.61 Total: -1.00 -33.24 305.88 -8.40 -41.64 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -3.47 Total: 4.64 kcal Atomic # 6 Polarization: -20.85 SS G_CDS: -2.13 Total: -22.98 kcal Atomic # 7 Polarization: -44.81 SS G_CDS: 0.41 Total: -44.40 kcal Atomic # 8 Polarization: -52.01 SS G_CDS: -2.24 Total: -54.25 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: 54.83 SS G_CDS: -0.56 Total: 54.27 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -33.24 -8.40 -41.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127819771.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.249 kcal (2) G-P(sol) polarization free energy of solvation -33.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds