Wall clock time and date at job start Tue Mar 31 2020 05:34:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46495 * 109.47247 * 2 1 4 4 C 1.46506 * 119.99753 * 84.99906 * 3 2 1 5 5 C 1.50703 * 109.47289 * 275.00143 * 4 3 2 6 6 H 1.07994 * 119.99399 * 0.02562 * 5 4 3 7 7 C 1.37874 * 119.99789 * 179.97438 * 5 4 3 8 8 N 1.31518 * 120.00144 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99733 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.46762 * 60.00562 * 9 7 5 11 11 H 1.48506 * 109.46725 * 180.02562 * 9 7 5 12 12 H 1.48494 * 109.47116 * 300.00217 * 9 7 5 13 13 S 1.65602 * 120.00241 * 265.00554 * 3 2 1 14 14 O 1.42097 * 106.40599 * 23.53509 * 13 3 2 15 15 O 1.42097 * 106.40158 * 156.46000 * 13 3 2 16 16 C 1.76208 * 107.21383 * 269.99567 * 13 3 2 17 17 C 1.38163 * 120.02554 * 115.00210 * 16 13 3 18 18 C 1.38244 * 120.05726 * 179.97438 * 17 16 13 19 19 C 1.38286 * 120.10978 * 0.02562 * 18 17 16 20 20 C 1.38125 * 120.05447 * 0.02562 * 19 18 17 21 21 C 1.38712 * 120.02777 * 294.72258 * 16 13 3 22 22 O 1.35897 * 120.05888 * 0.02562 * 21 16 13 23 23 H 1.09004 * 109.47465 * 59.99972 * 1 2 3 24 24 H 1.08999 * 109.47274 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47072 * 299.99950 * 1 2 3 26 26 H 1.09002 * 109.46951 * 240.00588 * 2 1 3 27 27 H 1.08998 * 109.46978 * 120.00530 * 2 1 3 28 28 H 1.09001 * 109.47060 * 35.00593 * 4 3 2 29 29 H 1.09004 * 109.47073 * 155.00082 * 4 3 2 30 30 H 0.96997 * 119.99752 * 179.97438 * 8 7 5 31 31 H 1.08004 * 119.97191 * 359.97438 * 17 16 13 32 32 H 1.08002 * 119.94268 * 179.97438 * 18 17 16 33 33 H 1.08003 * 119.97452 * 180.02562 * 19 18 17 34 34 H 1.08005 * 120.02564 * 179.97438 * 20 19 18 35 35 H 0.96702 * 114.00294 * 89.99444 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1582 2.1086 1.2640 5 6 0.8360 2.7288 1.6357 6 1 -0.0227 2.5941 0.9948 7 6 0.7224 3.4671 2.7945 8 7 1.7681 3.6306 3.5753 9 14 -0.9164 4.2364 3.2550 10 1 -1.9383 3.1698 3.4075 11 1 -0.7745 4.9736 4.5363 12 1 -1.3388 5.1776 2.1869 13 16 2.4121 2.1202 -1.4287 14 8 1.6868 1.4416 -2.4448 15 8 2.3056 3.5186 -1.1997 16 6 4.1170 1.7941 -1.7320 17 6 4.4918 1.0305 -2.8207 18 6 5.8292 0.7747 -3.0595 19 6 6.7950 1.2817 -2.2096 20 6 6.4254 2.0448 -1.1192 21 6 5.0842 2.3087 -0.8812 22 8 4.7184 3.0644 0.1874 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 2.4690 1.4182 2.0481 29 1 2.9080 2.8918 1.1514 30 1 1.6882 4.1504 4.3903 31 1 3.7393 0.6330 -3.4857 32 1 6.1200 0.1771 -3.9109 33 1 7.8392 1.0808 -2.3985 34 1 7.1801 2.4402 -0.4555 35 1 4.5620 2.5550 0.9944 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127819771.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:07 Heat of formation + Delta-G solvation = -107.631489 kcal Electronic energy + Delta-G solvation = -21477.212550 eV Core-core repulsion = 18180.934630 eV Total energy + Delta-G solvation = -3296.277920 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.087 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.78249 -38.45648 -37.91572 -37.37035 -36.78452 -34.60335 -32.31369 -31.42334 -30.82899 -28.64106 -24.69247 -24.34630 -23.77916 -23.29794 -20.15787 -19.65713 -18.80682 -18.28864 -18.00212 -17.28921 -16.65538 -16.63428 -16.16733 -15.70060 -15.30385 -15.02460 -14.67761 -14.61705 -13.97653 -13.77522 -13.63506 -13.36616 -13.12763 -13.07224 -12.93453 -12.86679 -12.81790 -12.70021 -12.41763 -12.19738 -12.04528 -11.65438 -11.54262 -11.28145 -10.51726 -10.43661 -9.87046 -9.73001 -8.14983 -6.21712 -0.53749 -0.23724 0.18443 1.40182 1.43932 1.50052 2.08663 2.43820 2.48684 2.83605 3.03142 3.19115 3.41015 3.87371 4.00346 4.04598 4.27857 4.36430 4.49398 4.53512 4.58382 4.73880 4.81589 4.99290 5.06375 5.17361 5.22211 5.25016 5.31045 5.49805 5.60676 5.74242 5.78114 5.98747 6.19434 6.50832 6.83098 7.44311 8.92408 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.022692 B = 0.006584 C = 0.005744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.639987 B = 4251.410506 C = 4873.534434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.123 3.877 3 N -0.988 5.988 4 C 0.253 3.747 5 C -0.538 4.538 6 H 0.052 0.948 7 C 0.015 3.985 8 N -0.920 5.920 9 Si 0.945 3.055 10 H -0.265 1.265 11 H -0.278 1.278 12 H -0.283 1.283 13 S 2.690 3.310 14 O -0.989 6.989 15 O -0.987 6.987 16 C -0.720 4.720 17 C -0.025 4.025 18 C -0.145 4.145 19 C -0.040 4.040 20 C -0.173 4.173 21 C 0.183 3.817 22 O -0.508 6.508 23 H 0.037 0.963 24 H 0.087 0.913 25 H 0.052 0.948 26 H 0.089 0.911 27 H 0.090 0.910 28 H 0.036 0.964 29 H 0.046 0.954 30 H 0.265 0.735 31 H 0.151 0.849 32 H 0.174 0.826 33 H 0.178 0.822 34 H 0.156 0.844 35 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.634 -10.640 -9.567 17.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.002 4.002 3 N -0.827 5.827 4 C 0.131 3.869 5 C -0.577 4.577 6 H 0.070 0.930 7 C -0.184 4.184 8 N -0.560 5.560 9 Si 0.771 3.229 10 H -0.190 1.190 11 H -0.203 1.203 12 H -0.209 1.209 13 S 2.783 3.217 14 O -0.979 6.979 15 O -0.977 6.977 16 C -0.809 4.809 17 C -0.044 4.044 18 C -0.164 4.164 19 C -0.058 4.058 20 C -0.192 4.192 21 C 0.136 3.864 22 O -0.325 6.325 23 H 0.056 0.944 24 H 0.106 0.894 25 H 0.071 0.929 26 H 0.107 0.893 27 H 0.109 0.891 28 H 0.054 0.946 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.169 0.831 32 H 0.191 0.809 33 H 0.195 0.805 34 H 0.174 0.826 35 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges 10.171 -9.632 -10.263 17.365 hybrid contribution -0.590 0.355 1.111 1.307 sum 9.581 -9.277 -9.152 16.175 Atomic orbital electron populations 1.22245 0.96628 1.02614 1.01593 1.21326 0.94770 0.80703 1.03431 1.57370 1.78946 1.24147 1.22271 1.19060 0.96660 0.91222 0.80001 1.21781 0.97335 1.32058 1.06558 0.93003 1.25589 0.99757 0.96592 0.96477 1.69950 1.30596 1.41441 1.14052 0.85805 0.80849 0.78911 0.77318 1.18955 1.20329 1.20912 1.01621 0.74606 0.72886 0.72536 1.93455 1.70974 1.75832 1.57683 1.93557 1.86725 1.32331 1.85131 1.31185 1.24755 1.15657 1.09303 1.21182 0.99213 0.91254 0.92767 1.21755 0.91401 1.01607 1.01631 1.21865 1.02023 0.91186 0.90716 1.21865 0.94327 1.01419 1.01612 1.18371 0.92686 0.87545 0.87750 1.85017 1.89935 1.36370 1.21164 0.94355 0.89389 0.92860 0.89319 0.89138 0.94566 0.93692 0.92591 0.83108 0.80894 0.80455 0.82639 0.72838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.90 9.83 71.98 0.71 -5.19 16 2 C 0.12 4.06 6.09 86.38 0.53 4.59 16 3 N -0.99 -40.46 2.80 -519.83 -1.45 -41.91 16 4 C 0.25 12.22 4.41 85.63 0.38 12.60 16 5 C -0.54 -29.86 8.41 25.60 0.22 -29.64 16 6 H 0.05 2.92 6.89 -2.91 -0.02 2.90 16 7 C 0.02 0.86 5.46 84.65 0.46 1.32 16 8 N -0.92 -52.67 13.29 21.45 0.28 -52.39 16 9 Si 0.95 44.88 29.54 68.60 2.03 46.90 16 10 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 11 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 12 H -0.28 -13.73 7.11 99.48 0.71 -13.03 16 13 S 2.69 113.16 5.20 -56.49 -0.29 112.86 16 14 O -0.99 -41.32 15.94 -128.00 -2.04 -43.36 16 15 O -0.99 -51.72 16.26 -122.84 -2.00 -53.72 16 16 C -0.72 -24.30 5.92 22.37 0.13 -24.17 16 17 C -0.02 -0.65 9.55 22.25 0.21 -0.44 16 18 C -0.15 -2.62 10.04 22.28 0.22 -2.40 16 19 C -0.04 -0.68 10.04 22.25 0.22 -0.45 16 20 C -0.17 -4.09 9.99 22.37 0.22 -3.87 16 21 C 0.18 5.99 6.65 22.51 0.15 6.14 16 22 O -0.51 -19.35 10.63 -82.80 -0.88 -20.23 16 23 H 0.04 1.40 8.14 -2.38 -0.02 1.39 16 24 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 25 H 0.05 2.09 6.59 -2.39 -0.02 2.08 16 26 H 0.09 2.46 7.61 -2.39 -0.02 2.44 16 27 H 0.09 2.65 8.00 -2.39 -0.02 2.63 16 28 H 0.04 1.72 8.00 -2.39 -0.02 1.70 16 29 H 0.05 2.29 4.33 -2.38 -0.01 2.28 16 30 H 0.27 14.46 8.31 -92.71 -0.77 13.69 16 31 H 0.15 3.60 7.33 -2.91 -0.02 3.58 16 32 H 0.17 1.68 8.06 -2.91 -0.02 1.66 16 33 H 0.18 1.39 8.06 -2.91 -0.02 1.36 16 34 H 0.16 2.97 8.06 -2.91 -0.02 2.95 16 35 H 0.41 13.90 6.99 -74.06 -0.52 13.38 16 Total: -1.00 -74.99 305.88 -0.30 -75.29 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: 0.60 Total: 18.08 kcal Atomic # 6 Polarization: -44.97 SS G_CDS: 3.45 Total: -41.52 kcal Atomic # 7 Polarization: -93.13 SS G_CDS: -1.17 Total: -94.30 kcal Atomic # 8 Polarization: -112.40 SS G_CDS: -4.92 Total: -117.32 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.90 kcal Atomic # 16 Polarization: 113.16 SS G_CDS: -0.29 Total: 112.86 kcal Total: -74.99 -0.30 -75.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127819771.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.339 kcal (2) G-P(sol) polarization free energy of solvation -74.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds