Wall clock time and date at job start Tue Mar 31 2020 05:38:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42906 * 113.99925 * 2 1 4 4 C 1.53001 * 109.46981 * 179.97438 * 3 2 1 5 5 H 1.08999 * 109.46809 * 185.00403 * 4 3 2 6 6 N 1.46504 * 109.46976 * 65.00757 * 4 3 2 7 7 C 1.34771 * 120.00432 * 84.99557 * 6 4 3 8 8 O 1.21280 * 119.99776 * 359.97438 * 7 6 4 9 9 C 1.50693 * 120.00242 * 180.02562 * 7 6 4 10 10 S 1.81000 * 109.47428 * 180.02562 * 9 7 6 11 11 C 1.76201 * 100.00204 * 179.97438 * 10 9 7 12 12 H 1.07998 * 119.99792 * 359.97438 * 11 10 9 13 13 C 1.38799 * 119.99945 * 179.97438 * 11 10 9 14 14 N 1.31631 * 120.00326 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 119.99941 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.46999 * 89.99948 * 15 13 11 17 17 H 1.48504 * 109.47287 * 210.00069 * 15 13 11 18 18 H 1.48497 * 109.47121 * 330.00371 * 15 13 11 19 19 C 1.50696 * 109.47388 * 305.00147 * 4 3 2 20 20 C 1.34512 * 125.79261 * 259.99868 * 19 4 3 21 21 C 1.41379 * 106.84086 * 180.02562 * 20 19 4 22 22 C 1.34512 * 106.84332 * 0.02562 * 21 20 19 23 23 O 1.34301 * 108.41872 * 359.97438 * 22 21 20 24 24 H 1.09000 * 109.47058 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47016 * 299.99665 * 1 2 3 26 26 H 1.08993 * 109.47244 * 59.99696 * 1 2 3 27 27 H 1.09001 * 109.46457 * 60.00151 * 3 2 1 28 28 H 1.08997 * 109.46975 * 300.00180 * 3 2 1 29 29 H 0.97005 * 119.99280 * 265.00152 * 6 4 3 30 30 H 1.09003 * 109.47065 * 300.00368 * 9 7 6 31 31 H 1.08999 * 109.47308 * 59.99914 * 9 7 6 32 32 H 0.96991 * 120.00595 * 180.02562 * 14 13 11 33 33 H 1.07996 * 126.57559 * 359.97438 * 20 19 4 34 34 H 1.08007 * 126.57604 * 180.02562 * 21 20 19 35 35 H 1.08004 * 125.79431 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 1 3.9784 2.1766 0.0903 6 7 3.9767 0.5641 -1.2510 7 6 4.1663 1.3224 -2.3489 8 8 3.9712 2.5184 -2.3010 9 6 4.6195 0.6839 -3.6365 10 16 4.7826 1.9544 -4.9153 11 6 5.3092 0.9589 -6.2704 12 1 5.4348 -0.1060 -6.1413 13 6 5.5627 1.5433 -7.5036 14 7 5.4102 2.8413 -7.6607 15 14 6.1217 0.4880 -8.9400 16 1 4.9350 0.0055 -9.6911 17 1 6.9836 1.2946 -9.8410 18 1 6.8910 -0.6752 -8.4297 19 6 3.9715 0.3328 1.1648 20 6 4.4493 0.7877 2.3370 21 6 4.7314 -0.3468 3.1322 22 6 4.4097 -1.4270 2.3981 23 8 3.9497 -1.0093 1.2075 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.6886 1.8463 0.8900 28 1 1.6886 1.8464 -0.8900 29 1 4.1323 -0.3926 -1.2894 30 1 5.5833 0.1988 -3.4819 31 1 3.8859 -0.0578 -3.9522 32 1 5.5870 3.2496 -8.5225 33 1 4.5911 1.8211 2.6167 34 1 5.1290 -0.3461 4.1364 35 1 4.5043 -2.4558 2.7131 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000173764562.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:45 Heat of formation + Delta-G solvation = -89.391070 kcal Electronic energy + Delta-G solvation = -19815.052434 eV Core-core repulsion = 16519.565478 eV Total energy + Delta-G solvation = -3295.486956 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.087 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.50130 -40.81888 -38.84188 -36.14320 -34.58361 -33.95411 -32.58505 -30.25872 -29.14612 -27.67318 -27.00634 -24.40267 -22.78211 -21.68962 -21.22151 -19.92617 -18.78043 -17.98844 -17.40836 -17.30887 -16.90295 -16.87679 -16.61532 -16.29713 -15.87649 -15.73646 -14.93982 -14.53884 -14.18583 -13.94229 -13.72570 -13.67939 -13.40857 -13.22360 -13.16622 -13.03544 -12.88520 -12.59808 -12.25004 -11.73576 -11.14088 -11.09094 -10.81611 -10.67696 -10.31060 -10.29181 -9.40889 -8.66268 -8.34648 -6.12467 0.75705 1.25904 1.42765 1.45629 1.52150 1.56691 1.72622 2.02435 2.23266 2.27860 2.75840 2.99554 3.30542 3.55378 3.84854 3.93593 4.16112 4.24137 4.26637 4.28646 4.40660 4.44746 4.50089 4.51497 4.56521 4.82222 4.89955 5.01452 5.17602 5.25173 5.42298 5.62609 6.09968 6.20078 6.24778 6.38002 7.06807 7.11500 8.74556 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.025107 B = 0.003501 C = 0.003369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.957677 B = 7994.855605 C = 8308.397192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.397 6.397 3 C 0.052 3.948 4 C 0.235 3.765 5 H 0.126 0.874 6 N -0.707 5.707 7 C 0.542 3.458 8 O -0.557 6.557 9 C -0.130 4.130 10 S -0.142 6.142 11 C -0.549 4.549 12 H 0.081 0.919 13 C 0.015 3.985 14 N -0.910 5.910 15 Si 0.998 3.002 16 H -0.268 1.268 17 H -0.277 1.277 18 H -0.259 1.259 19 C -0.028 4.028 20 C -0.204 4.204 21 C -0.226 4.226 22 C -0.036 4.036 23 O -0.177 6.177 24 H 0.098 0.902 25 H 0.054 0.946 26 H 0.039 0.961 27 H 0.082 0.918 28 H 0.050 0.950 29 H 0.415 0.585 30 H 0.108 0.892 31 H 0.107 0.893 32 H 0.272 0.728 33 H 0.161 0.839 34 H 0.171 0.829 35 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.459 -10.053 21.965 24.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.316 6.316 3 C -0.026 4.026 4 C 0.130 3.870 5 H 0.143 0.857 6 N -0.360 5.360 7 C 0.328 3.672 8 O -0.434 6.434 9 C -0.282 4.282 10 S 0.086 5.914 11 C -0.697 4.697 12 H 0.099 0.901 13 C -0.190 4.190 14 N -0.547 5.547 15 Si 0.820 3.180 16 H -0.193 1.193 17 H -0.202 1.202 18 H -0.183 1.183 19 C -0.079 4.079 20 C -0.224 4.224 21 C -0.245 4.245 22 C -0.103 4.103 23 O -0.073 6.073 24 H 0.116 0.884 25 H 0.072 0.928 26 H 0.057 0.943 27 H 0.100 0.900 28 H 0.068 0.932 29 H 0.251 0.749 30 H 0.127 0.873 31 H 0.126 0.874 32 H 0.081 0.919 33 H 0.179 0.821 34 H 0.188 0.812 35 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -5.768 -8.273 21.709 23.937 hybrid contribution 0.379 -1.600 -0.848 1.850 sum -5.389 -9.874 20.861 23.701 Atomic orbital electron populations 1.22892 0.79743 1.03759 1.00518 1.87890 1.21109 1.27051 1.95526 1.22995 0.92179 0.85751 1.01686 1.19569 0.93104 0.95565 0.78741 0.85676 1.45761 1.69154 1.12207 1.08920 1.20016 0.75931 0.86540 0.84724 1.90686 1.51811 1.16191 1.84748 1.23361 1.05624 1.03544 0.95630 1.85475 1.88759 1.12944 1.04272 1.23216 1.52830 0.96376 0.97261 0.90051 1.26103 0.94741 0.96683 1.01452 1.70169 1.47078 1.11688 1.25740 0.84964 0.78426 0.77939 0.76716 1.19299 1.20202 1.18301 1.21998 1.06583 0.81493 0.97829 1.21896 1.04958 1.01690 0.93857 1.22136 1.07908 0.91531 1.02927 1.24841 1.00901 1.01766 0.82837 1.84022 1.65535 1.21635 1.36074 0.88373 0.92780 0.94275 0.90002 0.93214 0.74853 0.87335 0.87435 0.91944 0.82097 0.81197 0.74794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 113.37 1.25 1.74 16 2 O -0.40 -9.61 10.02 -148.98 -1.49 -11.10 16 3 C 0.05 1.24 5.73 71.98 0.41 1.65 16 4 C 0.24 5.91 2.83 44.24 0.13 6.04 16 5 H 0.13 3.23 7.57 -2.39 -0.02 3.21 16 6 N -0.71 -20.19 5.02 -446.11 -2.24 -22.43 16 7 C 0.54 20.33 7.81 87.66 0.68 21.01 16 8 O -0.56 -25.00 15.52 -3.03 -0.05 -25.04 16 9 C -0.13 -5.31 6.16 71.23 0.44 -4.87 16 10 S -0.14 -7.88 20.57 -56.49 -1.16 -9.04 16 11 C -0.55 -31.58 9.50 67.95 0.65 -30.94 16 12 H 0.08 4.37 7.80 -2.91 -0.02 4.35 16 13 C 0.02 0.86 5.49 84.86 0.47 1.33 16 14 N -0.91 -55.90 13.22 21.65 0.29 -55.61 16 15 Si 1.00 43.78 29.55 68.60 2.03 45.80 16 16 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 17 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 18 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 19 C -0.03 -0.64 5.67 24.83 0.14 -0.50 16 20 C -0.20 -3.98 10.80 22.19 0.24 -3.74 16 21 C -0.23 -3.65 10.91 22.19 0.24 -3.41 16 22 C -0.04 -0.57 12.09 66.97 0.81 0.24 16 23 O -0.18 -3.91 10.18 -2.47 -0.03 -3.94 16 24 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 25 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 26 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.42 10.43 8.32 -92.70 -0.77 9.66 16 30 H 0.11 4.03 8.14 -2.39 -0.02 4.01 16 31 H 0.11 4.02 8.14 -2.40 -0.02 4.00 16 32 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 33 H 0.16 2.58 8.06 -2.91 -0.02 2.56 16 34 H 0.17 1.84 8.06 -2.91 -0.02 1.82 16 35 H 0.24 1.72 8.06 -2.91 -0.02 1.70 16 Total: -1.00 -75.79 326.59 3.13 -72.66 By element: Atomic # 1 Polarization: 19.84 SS G_CDS: 0.33 Total: 20.17 kcal Atomic # 6 Polarization: -16.91 SS G_CDS: 5.45 Total: -11.46 kcal Atomic # 7 Polarization: -76.09 SS G_CDS: -1.95 Total: -78.04 kcal Atomic # 8 Polarization: -38.52 SS G_CDS: -1.57 Total: -40.08 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.80 kcal Atomic # 16 Polarization: -7.88 SS G_CDS: -1.16 Total: -9.04 kcal Total: -75.79 3.13 -72.66 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173764562.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.736 kcal (2) G-P(sol) polarization free energy of solvation -75.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds