Wall clock time and date at job start Tue Mar 31 2020 05:34:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.42899 * 109.46882 * 2 1 4 4 C 1.35907 * 116.99483 * 180.02562 * 3 2 1 5 5 C 1.38749 * 120.05768 * 359.97438 * 4 3 2 6 6 C 1.38128 * 119.94285 * 180.02562 * 5 4 3 7 7 C 1.38290 * 120.05430 * 359.97438 * 6 5 4 8 8 S 1.76200 * 119.94040 * 180.02562 * 7 6 5 9 9 O 1.42100 * 106.40178 * 358.33182 * 8 7 6 10 10 O 1.42095 * 106.39845 * 131.25166 * 8 7 6 11 11 N 1.65598 * 107.21551 * 244.79061 * 8 7 6 12 12 C 1.36938 * 120.00215 * 64.51951 * 11 8 7 13 13 H 1.07999 * 119.99841 * 4.89880 * 12 11 8 14 14 C 1.38814 * 119.99793 * 184.90108 * 12 11 8 15 15 N 1.31625 * 119.99338 * 180.02562 * 14 12 11 16 16 Si 1.86799 * 120.00323 * 359.97438 * 14 12 11 17 17 H 1.48496 * 109.46908 * 89.99983 * 16 14 12 18 18 H 1.48500 * 109.46901 * 210.00051 * 16 14 12 19 19 H 1.48504 * 109.46862 * 330.00314 * 16 14 12 20 20 C 1.38236 * 120.11204 * 0.02562 * 7 6 5 21 21 C 1.50699 * 119.97294 * 180.02562 * 20 7 6 22 22 C 1.38171 * 120.05833 * 359.76405 * 20 7 6 23 23 H 1.08994 * 109.47138 * 300.00168 * 1 2 3 24 24 H 1.09003 * 109.46633 * 60.00352 * 1 2 3 25 25 H 1.08999 * 109.46602 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46893 * 120.00132 * 2 1 3 27 27 H 1.09004 * 109.47213 * 239.99686 * 2 1 3 28 28 H 1.07996 * 120.02592 * 0.02943 * 5 4 3 29 29 H 1.07996 * 119.96986 * 179.97438 * 6 5 4 30 30 H 0.97008 * 119.99945 * 244.51480 * 11 8 7 31 31 H 0.97004 * 119.99396 * 180.02562 * 15 14 12 32 32 H 1.08994 * 109.47315 * 84.26460 * 21 20 7 33 33 H 1.08999 * 109.47413 * 204.26606 * 21 20 7 34 34 H 1.09004 * 109.46879 * 324.26479 * 21 20 7 35 35 H 1.08004 * 120.03250 * 180.25304 * 22 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3537 1.5253 -0.0005 5 6 4.2000 0.4258 -0.0005 6 6 5.5690 0.6094 -0.0005 7 6 6.0963 1.8879 -0.0011 8 16 7.8431 2.1187 -0.0018 9 8 8.4194 0.8204 0.0380 10 8 8.1227 3.0620 -1.0270 11 7 8.2412 2.8512 1.4290 12 6 8.0414 2.1940 2.6136 13 1 7.6989 1.1697 2.6117 14 6 8.2791 2.8443 3.8167 15 7 8.0874 2.2123 4.9553 16 14 8.8721 4.6156 3.8199 17 1 7.7017 5.5293 3.8427 18 1 9.7104 4.8548 5.0221 19 1 9.6755 4.8708 2.5973 20 6 5.2552 2.9849 -0.0011 21 6 5.8332 4.3767 -0.0023 22 6 3.8851 2.8066 -0.0055 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3632 -1.0277 -0.0005 26 1 1.8934 -0.5139 0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 3.7886 -0.5728 -0.0006 29 1 6.2281 -0.2461 -0.0001 30 1 8.6161 3.7459 1.4279 31 1 8.2531 2.6668 5.7961 32 1 6.0667 4.6723 -1.0251 33 1 5.1077 5.0718 0.4201 34 1 6.7434 4.3926 0.5972 35 1 3.2284 3.6640 -0.0096 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178127967.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:18 Heat of formation + Delta-G solvation = -88.628950 kcal Electronic energy + Delta-G solvation = -20752.959737 eV Core-core repulsion = 17457.505829 eV Total energy + Delta-G solvation = -3295.453908 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.087 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.06171 -37.64475 -36.24067 -34.83565 -34.77884 -32.39243 -32.06997 -31.46459 -29.59971 -26.85609 -24.20322 -23.67761 -22.67281 -20.93927 -18.90086 -18.28914 -17.79345 -17.05049 -16.32260 -16.19636 -15.90938 -14.90713 -14.34707 -14.11030 -13.76255 -13.72264 -13.23551 -13.09050 -12.99070 -12.90098 -12.66725 -12.52924 -11.93719 -11.74306 -11.64587 -11.41477 -11.13407 -11.07413 -10.95786 -10.77904 -10.70259 -10.46503 -10.36529 -10.06138 -9.89783 -8.56928 -8.45792 -8.23398 -6.40256 -3.91505 1.25693 1.53156 1.59639 3.10471 3.11376 3.12707 3.18041 3.74333 4.10385 4.21680 4.68780 4.74364 4.75233 4.95373 5.01362 5.06715 5.08148 5.27100 5.32005 5.42840 5.51990 5.58029 5.75547 5.83396 5.92751 5.95986 6.11667 6.19736 6.45387 6.48003 6.63917 6.87972 6.93926 7.46125 7.62118 8.30664 8.92299 9.05950 10.70793 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.018815 B = 0.005710 C = 0.005232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.809027 B = 4902.381020 C = 5350.114732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.051 3.949 3 O -0.317 6.317 4 C 0.169 3.831 5 C -0.239 4.239 6 C 0.020 3.980 7 C -0.693 4.693 8 S 2.636 3.364 9 O -0.969 6.969 10 O -0.998 6.998 11 N -0.981 5.981 12 C -0.280 4.280 13 H 0.121 0.879 14 C 0.049 3.951 15 N -0.872 5.872 16 Si 0.880 3.120 17 H -0.269 1.269 18 H -0.276 1.276 19 H -0.264 1.264 20 C 0.057 3.943 21 C -0.141 4.141 22 C -0.179 4.179 23 H 0.066 0.934 24 H 0.065 0.935 25 H 0.077 0.923 26 H 0.065 0.935 27 H 0.063 0.937 28 H 0.129 0.871 29 H 0.141 0.859 30 H 0.391 0.609 31 H 0.275 0.725 32 H 0.094 0.906 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.230 -0.272 -7.682 13.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.024 4.024 3 O -0.230 6.230 4 C 0.123 3.877 5 C -0.258 4.258 6 C 0.001 3.999 7 C -0.776 4.776 8 S 2.728 3.272 9 O -0.960 6.960 10 O -0.987 6.987 11 N -0.734 5.734 12 C -0.418 4.418 13 H 0.138 0.862 14 C -0.158 4.158 15 N -0.513 5.513 16 Si 0.706 3.294 17 H -0.194 1.194 18 H -0.201 1.201 19 H -0.190 1.190 20 C 0.055 3.945 21 C -0.198 4.198 22 C -0.198 4.198 23 H 0.085 0.915 24 H 0.084 0.916 25 H 0.096 0.904 26 H 0.083 0.917 27 H 0.081 0.919 28 H 0.147 0.853 29 H 0.159 0.841 30 H 0.226 0.774 31 H 0.085 0.915 32 H 0.112 0.888 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -10.951 -0.561 -8.294 13.749 hybrid contribution -0.404 0.934 0.629 1.196 sum -11.356 0.373 -7.665 13.706 Atomic orbital electron populations 1.21772 0.92793 1.02781 1.03458 1.22816 0.95760 0.82061 1.01743 1.86052 1.19361 1.29427 1.88189 1.19081 0.81774 0.94357 0.92487 1.21245 0.94550 0.97815 1.12194 1.20726 0.94524 0.96027 0.88668 1.31442 1.29617 0.98343 1.18154 1.05355 0.74824 0.73742 0.73245 1.93467 1.75649 1.39903 1.86931 1.93442 1.85205 1.62720 1.57378 1.52118 1.70081 1.28766 1.22407 1.19022 1.43654 0.97546 0.81595 0.86158 1.25113 0.97354 0.98536 0.94825 1.69728 1.46530 1.37614 0.97461 0.86604 0.79668 0.84481 0.78620 1.19405 1.20138 1.18962 1.19205 0.91995 0.94492 0.88789 1.21217 1.01938 0.92494 1.04147 1.20288 0.94623 0.94727 1.10193 0.91478 0.91625 0.90396 0.91689 0.91924 0.85330 0.84116 0.77393 0.91471 0.88761 0.90497 0.90685 0.85065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 10.28 37.16 0.38 -0.82 16 2 C 0.05 0.54 5.46 37.16 0.20 0.74 16 3 O -0.32 -4.52 10.14 -19.45 -0.20 -4.72 16 4 C 0.17 2.75 6.69 -39.22 -0.26 2.49 16 5 C -0.24 -3.86 9.04 -39.43 -0.36 -4.21 16 6 C 0.02 0.37 9.54 -39.60 -0.38 -0.01 16 7 C -0.69 -13.83 5.81 -39.56 -0.23 -14.06 16 8 S 2.64 57.41 4.91 -107.50 -0.53 56.88 16 9 O -0.97 -23.39 16.66 -57.17 -0.95 -24.34 16 10 O -1.00 -22.05 16.47 -57.17 -0.94 -23.00 16 11 N -0.98 -22.31 4.34 31.50 0.14 -22.17 16 12 C -0.28 -7.20 10.12 -15.06 -0.15 -7.36 16 13 H 0.12 3.31 8.03 -52.49 -0.42 2.89 16 14 C 0.05 1.28 5.50 -17.43 -0.10 1.18 16 15 N -0.87 -24.05 13.97 55.49 0.78 -23.28 16 16 Si 0.88 19.15 27.78 -169.99 -4.72 14.43 16 17 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 18 H -0.28 -6.01 7.11 56.52 0.40 -5.60 16 19 H -0.26 -5.40 6.45 56.52 0.36 -5.03 16 20 C 0.06 1.04 5.87 -104.65 -0.61 0.42 16 21 C -0.14 -2.31 8.60 36.01 0.31 -2.00 16 22 C -0.18 -3.00 9.62 -39.43 -0.38 -3.38 16 23 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 24 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.66 7.66 -51.93 -0.40 0.26 16 27 H 0.06 0.59 7.66 -51.93 -0.40 0.19 16 28 H 0.13 1.67 6.30 -52.49 -0.33 1.33 16 29 H 0.14 2.48 7.33 -52.49 -0.38 2.09 16 30 H 0.39 8.25 5.48 -34.47 -0.19 8.06 16 31 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 32 H 0.09 1.44 8.00 -51.93 -0.42 1.02 16 33 H 0.08 1.04 8.05 -51.93 -0.42 0.62 16 34 H 0.07 1.31 5.43 -51.93 -0.28 1.03 16 35 H 0.13 1.88 8.06 -52.48 -0.42 1.46 16 LS Contribution 306.22 15.07 4.61 4.61 Total: -1.00 -31.10 306.22 -7.49 -38.59 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: -4.10 Total: 10.00 kcal Atomic # 6 Polarization: -25.43 SS G_CDS: -1.57 Total: -27.01 kcal Atomic # 7 Polarization: -46.36 SS G_CDS: 0.91 Total: -45.45 kcal Atomic # 8 Polarization: -49.97 SS G_CDS: -2.09 Total: -52.06 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -4.72 Total: 14.43 kcal Atomic # 16 Polarization: 57.41 SS G_CDS: -0.53 Total: 56.88 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -31.10 -7.49 -38.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178127967.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.042 kcal (2) G-P(sol) polarization free energy of solvation -31.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds