Wall clock time and date at job start Tue Mar 31 2020 05:33:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00159 * 2 1 3 5 5 C 1.50703 * 109.47148 * 184.99915 * 4 2 1 6 6 H 1.08004 * 119.99894 * 0.02562 * 5 4 2 7 7 C 1.37874 * 120.00136 * 179.97438 * 5 4 2 8 8 N 1.31512 * 119.99679 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00188 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47086 * 89.99749 * 9 7 5 11 11 H 1.48500 * 109.47223 * 209.99861 * 9 7 5 12 12 H 1.48499 * 109.46912 * 330.00223 * 9 7 5 13 13 S 1.81405 * 109.47264 * 239.99608 * 2 1 3 14 14 C 1.76205 * 102.99585 * 65.00262 * 13 2 1 15 15 N 1.29643 * 125.41317 * 0.02562 * 14 13 2 16 16 N 1.37768 * 115.60660 * 179.97438 * 15 14 13 17 17 C 1.29580 * 115.62184 * 0.02562 * 16 15 14 18 18 N 1.39002 * 125.40268 * 180.02562 * 17 16 15 19 19 C 1.46505 * 119.99663 * 359.97438 * 18 17 16 20 20 C 1.53001 * 117.49495 * 223.74379 * 19 18 17 21 21 C 1.52998 * 117.49712 * 155.08683 * 19 18 17 22 22 S 1.76040 * 109.19405 * 359.77158 * 17 16 15 23 23 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 24 24 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 25 25 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.46945 * 304.99450 * 4 2 1 27 27 H 1.09000 * 109.47314 * 64.99572 * 4 2 1 28 28 H 0.97002 * 119.99753 * 180.02562 * 8 7 5 29 29 H 0.96996 * 119.99787 * 179.97438 * 18 17 16 30 30 H 1.08994 * 115.54876 * 9.40931 * 19 18 17 31 31 H 1.09006 * 117.50032 * 359.97438 * 20 19 18 32 32 H 1.08999 * 117.49530 * 145.01955 * 20 19 18 33 33 H 1.09002 * 117.49713 * 214.97593 * 21 19 18 34 34 H 1.09007 * 117.49664 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5419 -0.6150 1.3127 6 1 4.0790 -0.0855 0.5396 7 6 4.2304 -1.1927 2.3583 8 7 3.5763 -1.8361 3.3005 9 14 6.0921 -1.0616 2.4366 10 1 6.4709 0.1613 3.1892 11 1 6.6441 -2.2566 3.1239 12 1 6.6412 -0.9849 1.0590 13 16 2.1347 -0.8552 -1.4811 14 6 1.5828 0.1846 -2.7922 15 7 0.9100 1.2832 -2.6473 16 7 0.5824 1.9391 -3.8137 17 6 0.9879 1.3741 -4.9071 18 7 0.7715 1.8584 -6.1919 19 6 0.0294 3.1061 -6.3891 20 6 -1.0201 3.1355 -7.5019 21 6 0.2989 3.8930 -7.6732 22 16 1.8627 -0.1002 -4.5068 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.6055 -0.2618 2.1370 27 1 1.7516 -1.7716 1.2057 28 1 4.0606 -2.2423 4.0363 29 1 1.1118 1.3702 -6.9579 30 1 -0.1805 3.6762 -5.4841 31 1 -1.1582 2.2266 -8.0877 32 1 -1.9203 3.7253 -7.3292 33 1 0.2660 4.9808 -7.6132 34 1 1.0287 3.4824 -8.3712 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188265347.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:00 Heat of formation + Delta-G solvation = 81.296608 kcal Electronic energy + Delta-G solvation = -17030.225305 eV Core-core repulsion = 14217.185544 eV Total energy + Delta-G solvation = -2813.039761 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 285.066 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.36176 -37.99329 -34.63825 -34.07704 -32.09390 -30.11234 -27.45840 -24.86659 -23.33627 -22.94902 -22.78019 -20.82804 -20.39338 -19.25894 -17.27900 -16.52951 -16.36579 -15.78103 -15.09988 -14.98144 -14.59168 -14.26643 -13.27380 -13.15687 -12.90679 -12.84309 -12.43023 -11.97225 -11.82442 -11.65386 -11.28592 -10.98429 -10.89232 -10.76025 -10.71569 -10.60883 -10.41902 -9.94076 -9.51256 -9.48999 -9.39918 -9.18069 -8.50560 -8.42188 -7.15365 -6.07167 -4.09892 0.54036 0.98139 1.23884 1.79641 2.47111 2.82248 2.89399 3.31310 3.37726 3.42273 3.51280 4.31134 4.42708 4.54496 4.55677 4.71821 5.22318 5.30410 5.31370 5.44060 5.56539 5.66783 5.69254 5.81434 6.09773 6.49329 6.54834 6.58325 6.73273 6.88535 7.46815 7.51599 7.89695 8.20204 8.25033 8.94966 9.54914 11.03779 Molecular weight = 285.07amu Principal moments of inertia in cm(-1) A = 0.033342 B = 0.003452 C = 0.003324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.577564 B = 8109.115893 C = 8421.336007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.058 4.058 3 H 0.091 0.909 4 C 0.038 3.962 5 C -0.525 4.525 6 H 0.064 0.936 7 C 0.061 3.939 8 N -0.893 5.893 9 Si 0.892 3.108 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.271 1.271 13 S 0.037 5.963 14 C 0.030 3.970 15 N -0.269 5.269 16 N -0.355 5.355 17 C 0.307 3.693 18 N -0.665 5.665 19 C 0.100 3.900 20 C -0.196 4.196 21 C -0.191 4.191 22 S 0.045 5.955 23 H 0.059 0.941 24 H 0.064 0.936 25 H 0.058 0.942 26 H 0.042 0.958 27 H 0.029 0.971 28 H 0.262 0.738 29 H 0.414 0.586 30 H 0.140 0.860 31 H 0.097 0.903 32 H 0.103 0.897 33 H 0.105 0.895 34 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.665 5.899 -20.762 22.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.189 4.189 3 H 0.109 0.891 4 C -0.001 4.001 5 C -0.564 4.564 6 H 0.082 0.918 7 C -0.141 4.141 8 N -0.532 5.532 9 Si 0.720 3.280 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.196 1.196 13 S 0.267 5.733 14 C -0.369 4.369 15 N -0.099 5.099 16 N -0.190 5.190 17 C -0.076 4.076 18 N -0.305 5.305 19 C -0.009 4.009 20 C -0.235 4.235 21 C -0.230 4.230 22 S 0.278 5.722 23 H 0.078 0.922 24 H 0.083 0.917 25 H 0.077 0.923 26 H 0.060 0.940 27 H 0.047 0.953 28 H 0.072 0.928 29 H 0.252 0.748 30 H 0.158 0.842 31 H 0.115 0.885 32 H 0.122 0.878 33 H 0.123 0.877 34 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -6.323 5.277 -20.334 21.939 hybrid contribution 0.525 0.972 -0.260 1.135 sum -5.797 6.249 -20.594 22.289 Atomic orbital electron populations 1.22099 0.94111 1.02111 1.02344 1.23824 0.97551 1.02790 0.94690 0.89055 1.19110 0.96573 0.95724 0.88710 1.21260 0.91446 1.35015 1.08640 0.91799 1.24981 0.98598 0.95000 0.95492 1.69951 1.35750 1.35551 1.11918 0.86577 0.85500 0.77555 0.78402 1.20621 1.21198 1.19556 1.86210 1.66165 1.27351 0.93596 1.31037 1.03260 1.01884 1.00707 1.75477 1.14121 1.04589 1.15670 1.75023 1.25735 1.25771 0.92466 1.25777 0.96765 0.93909 0.91168 1.43111 1.60641 1.25375 1.01399 1.21661 0.97388 0.86869 0.94950 1.23506 0.93995 1.02876 1.03118 1.23445 0.99566 0.99840 1.00105 1.85470 1.59738 1.25254 1.01739 0.92157 0.91746 0.92327 0.93966 0.95311 0.92819 0.74825 0.84232 0.88473 0.87815 0.87667 0.88435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.68 9.06 37.16 0.34 -2.34 16 2 C -0.06 -1.21 2.47 -26.73 -0.07 -1.27 16 3 H 0.09 1.97 8.14 -51.93 -0.42 1.55 16 4 C 0.04 0.93 4.45 -27.88 -0.12 0.81 16 5 C -0.53 -14.21 8.53 -34.44 -0.29 -14.50 16 6 H 0.06 1.71 7.60 -52.48 -0.40 1.31 16 7 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 8 N -0.89 -25.97 13.29 55.43 0.74 -25.24 16 9 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 13 S 0.04 0.72 20.90 -107.50 -2.25 -1.53 16 14 C 0.03 0.53 7.58 51.84 0.39 0.93 16 15 N -0.27 -5.09 9.95 31.12 0.31 -4.78 16 16 N -0.35 -6.08 11.35 30.86 0.35 -5.73 16 17 C 0.31 4.27 8.42 -87.38 -0.74 3.53 16 18 N -0.66 -6.58 5.74 -54.34 -0.31 -6.89 16 19 C 0.10 0.88 6.55 -67.93 -0.45 0.44 16 20 C -0.20 -1.29 10.46 -26.69 -0.28 -1.57 16 21 C -0.19 -1.19 10.46 -26.70 -0.28 -1.47 16 22 S 0.04 0.63 23.39 -107.50 -2.51 -1.89 16 23 H 0.06 1.09 6.23 -51.93 -0.32 0.77 16 24 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 25 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.04 1.10 8.14 -51.93 -0.42 0.67 16 27 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 29 H 0.41 2.96 8.95 -40.82 -0.37 2.60 16 30 H 0.14 1.47 7.63 -51.93 -0.40 1.07 16 31 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.10 0.52 8.14 -51.92 -0.42 0.10 16 LS Contribution 320.92 15.07 4.84 4.84 Total: -1.00 -30.41 320.92 -9.88 -40.29 By element: Atomic # 1 Polarization: 2.90 SS G_CDS: -4.42 Total: -1.53 kcal Atomic # 6 Polarization: -12.25 SS G_CDS: -1.59 Total: -13.84 kcal Atomic # 7 Polarization: -43.72 SS G_CDS: 1.08 Total: -42.64 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: 1.34 SS G_CDS: -4.76 Total: -3.42 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.41 -9.88 -40.29 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188265347.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.588 kcal (2) G-P(sol) polarization free energy of solvation -30.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds