Wall clock time and date at job start Tue Mar 31 2020 05:39:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42894 * 114.00013 * 2 1 4 4 C 1.53008 * 109.46895 * 179.97438 * 3 2 1 5 5 S 1.81398 * 109.47113 * 179.97438 * 4 3 2 6 6 O 1.42107 * 110.54379 * 68.37286 * 5 4 3 7 7 O 1.42099 * 110.54289 * 291.62740 * 5 4 3 8 8 N 1.65599 * 104.45206 * 180.02562 * 5 4 3 9 9 C 1.38728 * 119.99640 * 59.87516 * 8 5 4 10 10 C 1.38750 * 120.29615 * 35.11195 * 9 8 5 11 11 C 1.38168 * 120.02668 * 180.27334 * 10 9 8 12 12 C 1.38907 * 120.62545 * 359.72128 * 11 10 9 13 13 C 1.36450 * 120.59731 * 359.97329 * 12 11 10 14 14 C 1.40725 * 119.94821 * 0.02635 * 13 12 11 15 15 C 1.41049 * 120.30359 * 180.02562 * 14 13 12 16 16 H 1.08004 * 119.99790 * 206.02939 * 15 14 13 17 17 C 1.39929 * 119.99955 * 26.03222 * 15 14 13 18 18 N 1.30877 * 120.00285 * 26.08152 * 17 15 14 19 19 Si 1.86799 * 119.99706 * 206.08504 * 17 15 14 20 20 H 1.48497 * 109.47329 * 179.97438 * 19 17 15 21 21 H 1.48501 * 109.47191 * 299.99782 * 19 17 15 22 22 H 1.48508 * 109.47168 * 59.99608 * 19 17 15 23 23 H 1.08992 * 109.46971 * 300.00217 * 1 2 3 24 24 H 1.09004 * 109.46670 * 60.00049 * 1 2 3 25 25 H 1.09002 * 109.47040 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47591 * 60.00199 * 3 2 1 27 27 H 1.09001 * 109.47221 * 299.99416 * 3 2 1 28 28 H 1.09000 * 109.46852 * 60.00337 * 4 3 2 29 29 H 1.08997 * 109.47344 * 300.00211 * 4 3 2 30 30 H 0.96995 * 120.00072 * 239.87901 * 8 5 4 31 31 H 1.08002 * 119.99055 * 359.97438 * 10 9 8 32 32 H 1.07999 * 119.69132 * 179.73955 * 11 10 9 33 33 H 1.07993 * 119.69838 * 179.97438 * 12 11 10 34 34 H 1.07991 * 120.02274 * 180.02562 * 13 12 11 35 35 H 0.97004 * 119.99290 * 6.02875 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 16 4.2734 2.8416 -0.0001 6 8 4.0278 3.4975 1.2364 7 8 4.0287 3.4959 -1.2376 8 7 5.9065 2.5669 -0.0001 9 6 6.4903 1.8567 -1.0389 10 6 6.0060 1.9841 -2.3329 11 6 6.5881 1.2699 -3.3625 12 6 7.6629 0.4246 -3.1180 13 6 8.1636 0.2848 -1.8564 14 6 7.5896 1.0006 -0.7894 15 6 8.1015 0.8621 0.5175 16 1 7.4626 1.0419 1.3696 17 6 9.4371 0.4919 0.7102 18 7 10.3294 0.7587 -0.2093 19 14 9.9465 -0.3834 2.2799 20 1 11.4039 -0.6649 2.2391 21 1 9.6412 0.4796 3.4492 22 1 9.1991 -1.6611 2.3991 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.6887 1.8464 0.8900 27 1 1.6887 1.8463 -0.8900 28 1 3.8575 0.6435 -0.8891 29 1 3.8568 0.6437 0.8908 30 1 6.4547 2.9024 0.7263 31 1 5.1706 2.6382 -2.5347 32 1 6.2041 1.3699 -4.3669 33 1 8.1062 -0.1269 -3.9338 34 1 8.9998 -0.3747 -1.6769 35 1 10.0841 1.2891 -0.9836 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193357873.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:18 Heat of formation + Delta-G solvation = -104.630057 kcal Electronic energy + Delta-G solvation = -20676.234222 eV Core-core repulsion = 17380.086454 eV Total energy + Delta-G solvation = -3296.147768 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.087 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -38.35349 -38.07030 -36.80403 -35.71111 -34.30192 -33.83205 -31.90514 -29.48889 -28.16043 -26.68788 -25.14136 -23.45148 -21.42598 -21.02611 -18.90397 -18.13325 -17.43700 -16.86977 -16.51984 -16.24969 -15.69194 -15.02069 -14.87824 -14.85138 -14.28411 -13.79567 -13.63317 -13.04769 -12.65974 -12.34635 -12.23790 -12.10078 -11.90683 -11.76764 -11.55371 -11.52602 -11.47886 -11.13211 -10.77023 -10.73004 -10.48565 -10.15885 -9.89764 -9.81495 -9.44888 -9.08192 -7.79160 -7.51366 -7.15569 -4.56887 0.47807 2.62404 2.66282 3.04239 3.09355 3.18668 3.28710 3.57218 3.91410 4.10970 4.41164 4.48231 4.61765 4.84180 5.02346 5.15539 5.15949 5.28072 5.46239 5.52063 5.82020 6.02001 6.10291 6.24230 6.60751 6.77404 6.86710 6.91489 7.19136 7.33364 7.59097 7.65976 7.77357 7.85701 7.98872 8.16400 8.57264 8.70554 9.90337 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.016447 B = 0.005674 C = 0.005213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.052295 B = 4933.629160 C = 5370.174616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.380 6.380 3 C 0.078 3.922 4 C -0.636 4.636 5 S 2.606 3.394 6 O -0.971 6.971 7 O -0.954 6.954 8 N -1.016 6.016 9 C 0.008 3.992 10 C -0.125 4.125 11 C -0.230 4.230 12 C -0.092 4.092 13 C -0.200 4.200 14 C 0.093 3.907 15 C -0.516 4.516 16 H 0.079 0.921 17 C 0.040 3.960 18 N -0.787 5.787 19 Si 1.062 2.938 20 H -0.273 1.273 21 H -0.275 1.275 22 H -0.274 1.274 23 H 0.043 0.957 24 H 0.044 0.956 25 H 0.088 0.912 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.144 0.856 29 H 0.140 0.860 30 H 0.420 0.580 31 H 0.133 0.867 32 H 0.096 0.904 33 H 0.092 0.908 34 H 0.109 0.891 35 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.949 -1.062 1.390 11.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.299 6.299 3 C 0.000 4.000 4 C -0.763 4.763 5 S 2.700 3.300 6 O -0.961 6.961 7 O -0.944 6.944 8 N -0.768 5.768 9 C -0.089 4.089 10 C -0.147 4.147 11 C -0.250 4.250 12 C -0.111 4.111 13 C -0.220 4.220 14 C 0.087 3.913 15 C -0.544 4.544 16 H 0.097 0.903 17 C -0.183 4.183 18 N -0.410 5.410 19 Si 0.886 3.114 20 H -0.198 1.198 21 H -0.200 1.200 22 H -0.199 1.199 23 H 0.062 0.938 24 H 0.062 0.938 25 H 0.107 0.893 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.162 0.838 29 H 0.158 0.842 30 H 0.258 0.742 31 H 0.150 0.850 32 H 0.114 0.886 33 H 0.110 0.890 34 H 0.127 0.873 35 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -10.111 -1.099 2.048 10.374 hybrid contribution -1.099 0.222 -0.541 1.244 sum -11.209 -0.877 1.508 11.344 Atomic orbital electron populations 1.22822 0.80920 1.03066 1.00258 1.87973 1.19733 1.26748 1.95423 1.22053 0.90344 0.86395 1.01246 1.30792 1.04308 1.27798 1.13367 1.05481 0.73800 0.76638 0.74112 1.93549 1.84547 1.72717 1.45308 1.93528 1.84731 1.71311 1.44793 1.52249 1.24025 1.67886 1.32656 1.17205 1.04963 1.01032 0.85682 1.21386 1.01811 1.00281 0.91183 1.20221 1.01822 1.05681 0.97268 1.20454 0.96215 0.98240 0.96194 1.20823 1.04434 1.04004 0.92786 1.17562 0.91700 0.88567 0.93514 1.20418 0.98229 1.42539 0.93241 0.90300 1.27027 0.92867 0.94654 1.03750 1.70479 1.37041 1.24145 1.09299 0.83663 0.77189 0.77077 0.73499 1.19776 1.19988 1.19917 0.93807 0.93753 0.89313 0.92009 0.91844 0.83780 0.84209 0.74199 0.84959 0.88572 0.88967 0.87339 0.88545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.36 16 2 O -0.38 -5.29 10.70 -35.23 -0.38 -5.67 16 3 C 0.08 1.05 5.95 37.16 0.22 1.27 16 4 C -0.64 -9.59 6.25 37.16 0.23 -9.36 16 5 S 2.61 44.88 5.22 -107.50 -0.56 44.32 16 6 O -0.97 -18.17 18.08 -57.54 -1.04 -19.21 16 7 O -0.95 -18.31 15.05 -57.54 -0.87 -19.18 16 8 N -1.02 -19.81 5.26 32.72 0.17 -19.64 16 9 C 0.01 0.19 6.14 -83.29 -0.51 -0.32 16 10 C -0.12 -2.71 9.24 -39.42 -0.36 -3.07 16 11 C -0.23 -4.86 10.04 -39.36 -0.39 -5.26 16 12 C -0.09 -1.99 9.97 -39.98 -0.40 -2.39 16 13 C -0.20 -4.75 7.92 -39.29 -0.31 -5.06 16 14 C 0.09 2.24 5.29 -106.63 -0.56 1.67 16 15 C -0.52 -12.39 8.33 -37.88 -0.32 -12.71 16 16 H 0.08 1.80 7.40 -52.48 -0.39 1.41 16 17 C 0.04 0.95 4.91 -17.33 -0.09 0.86 16 18 N -0.79 -19.58 12.34 55.55 0.69 -18.90 16 19 Si 1.06 20.26 30.00 -169.99 -5.10 15.16 16 20 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 21 H -0.27 -4.98 7.11 56.52 0.40 -4.58 16 22 H -0.27 -5.08 7.11 56.52 0.40 -4.68 16 23 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 24 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.14 2.26 8.14 -51.92 -0.42 1.83 16 29 H 0.14 2.00 8.14 -51.93 -0.42 1.57 16 30 H 0.42 7.91 8.04 -34.47 -0.28 7.64 16 31 H 0.13 2.76 5.17 -52.49 -0.27 2.49 16 32 H 0.10 1.80 8.06 -52.49 -0.42 1.38 16 33 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 34 H 0.11 2.64 6.56 -52.49 -0.34 2.30 16 35 H 0.30 7.69 6.79 -40.82 -0.28 7.42 16 LS Contribution 310.10 15.07 4.67 4.67 Total: -1.00 -29.40 310.10 -7.95 -37.36 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: -4.16 Total: 14.08 kcal Atomic # 6 Polarization: -31.62 SS G_CDS: -1.38 Total: -33.00 kcal Atomic # 7 Polarization: -39.39 SS G_CDS: 0.86 Total: -38.54 kcal Atomic # 8 Polarization: -41.77 SS G_CDS: -2.28 Total: -44.06 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.10 Total: 15.16 kcal Atomic # 16 Polarization: 44.88 SS G_CDS: -0.56 Total: 44.32 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -29.40 -7.95 -37.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193357873.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.275 kcal (2) G-P(sol) polarization free energy of solvation -29.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds