Wall clock time and date at job start Tue Mar 31 2020 05:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35899 * 116.99769 * 2 1 4 4 C 1.38749 * 120.05764 * 0.24762 * 3 2 1 5 5 C 1.38124 * 119.94616 * 180.32030 * 4 3 2 6 6 C 1.38294 * 120.04986 * 359.68533 * 5 4 3 7 7 C 1.38236 * 120.11395 * 0.02562 * 6 5 4 8 8 C 1.38159 * 120.05848 * 0.02562 * 7 6 5 9 9 C 1.50701 * 120.03133 * 179.97438 * 8 7 6 10 10 C 1.52997 * 109.47212 * 265.00010 * 9 8 7 11 11 N 1.46500 * 109.47473 * 179.97438 * 10 9 8 12 12 S 1.65601 * 120.00009 * 164.99896 * 11 10 9 13 13 O 1.42107 * 106.39878 * 178.54176 * 12 11 10 14 14 O 1.42099 * 106.40193 * 311.46062 * 12 11 10 15 15 C 1.76200 * 107.21950 * 65.00368 * 12 11 10 16 16 H 1.08001 * 119.99415 * 359.97438 * 15 12 11 17 17 C 1.37868 * 120.00302 * 179.97438 * 15 12 11 18 18 N 1.31509 * 120.00251 * 179.97438 * 17 15 12 19 19 Si 1.86807 * 119.99774 * 0.02562 * 17 15 12 20 20 H 1.48493 * 109.47222 * 90.00006 * 19 17 15 21 21 H 1.48503 * 109.46812 * 210.00180 * 19 17 15 22 22 H 1.48503 * 109.47077 * 329.99836 * 19 17 15 23 23 H 1.08998 * 109.47124 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47142 * 300.00353 * 1 2 3 25 25 H 1.09006 * 109.47170 * 60.00300 * 1 2 3 26 26 H 1.08002 * 120.03011 * 0.02562 * 4 3 2 27 27 H 1.07994 * 119.97736 * 179.70050 * 5 4 3 28 28 H 1.08004 * 119.94098 * 180.02562 * 6 5 4 29 29 H 1.08003 * 119.97210 * 180.02562 * 7 6 5 30 30 H 1.09002 * 109.47060 * 25.00065 * 9 8 7 31 31 H 1.09001 * 109.47380 * 145.00153 * 9 8 7 32 32 H 1.09002 * 109.47153 * 299.99998 * 10 9 8 33 33 H 1.08998 * 109.47533 * 59.99628 * 10 9 8 34 34 H 0.96999 * 119.99516 * 345.00722 * 11 10 9 35 35 H 0.97000 * 120.00062 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2914 2.3753 0.0052 5 6 1.9208 3.6048 -0.0015 6 6 3.3019 3.6757 -0.0068 7 6 4.0559 2.5171 -0.0060 8 6 3.4311 1.2849 -0.0003 9 6 4.2537 0.0222 0.0000 10 6 4.4215 -0.4776 -1.4362 11 7 5.2217 -1.7048 -1.4360 12 16 5.2578 -2.6699 -2.7812 13 8 6.1362 -3.7456 -2.4798 14 8 3.9060 -2.8579 -3.1767 15 6 6.0283 -1.7439 -4.0671 16 1 6.3694 -0.7369 -3.8773 17 6 6.1957 -2.3047 -5.3154 18 7 6.7703 -1.6133 -6.2752 19 14 5.6050 -4.0462 -5.6437 20 1 4.1996 -4.0104 -6.1216 21 1 6.4644 -4.6733 -6.6798 22 1 5.6817 -4.8394 -4.3906 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3634 0.5138 -0.8901 26 1 0.2128 2.3203 0.0097 27 1 1.3339 4.5113 -0.0024 28 1 3.7922 4.6381 -0.0116 29 1 5.1344 2.5752 -0.0097 30 1 5.2341 0.2273 0.4302 31 1 3.7489 -0.7402 0.5934 32 1 3.4412 -0.6828 -1.8664 33 1 4.9262 0.2847 -2.0297 34 1 5.7302 -1.9520 -0.6479 35 1 6.8884 -2.0081 -7.1534 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000221863028.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:00 Heat of formation + Delta-G solvation = -98.588823 kcal Electronic energy + Delta-G solvation = -20316.175830 eV Core-core repulsion = 17020.290029 eV Total energy + Delta-G solvation = -3295.885800 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.087 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.27923 -37.48242 -35.70550 -35.29948 -34.34554 -32.98288 -32.16582 -30.16121 -28.00365 -27.09617 -26.34750 -23.16177 -22.16302 -21.06593 -19.03562 -18.01256 -17.41680 -16.56324 -16.33895 -15.89437 -15.59644 -15.40697 -14.88182 -14.46456 -14.27678 -13.76007 -13.48065 -13.25393 -13.07701 -12.79060 -12.78345 -12.09818 -11.86157 -11.67412 -11.40529 -11.29461 -11.17889 -10.94289 -10.82894 -10.63427 -10.53644 -10.41768 -9.78536 -9.16262 -9.14326 -8.88745 -8.48042 -8.14607 -6.75439 -5.28404 1.26449 1.40864 2.17929 3.11156 3.22101 3.26632 3.31490 3.71261 4.00116 4.39208 4.64998 4.72481 4.75687 5.00013 5.01148 5.08814 5.24934 5.30452 5.38747 5.43766 5.46745 5.53036 5.59243 5.80677 6.05543 6.12202 6.23265 6.29375 6.35212 6.45571 6.57166 6.71678 6.77052 7.37045 7.52867 7.84002 8.26465 8.76069 10.37040 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.023674 B = 0.004606 C = 0.004374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.434134 B = 6078.194618 C = 6399.740464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.308 6.308 3 C 0.132 3.868 4 C -0.210 4.210 5 C -0.087 4.087 6 C -0.158 4.158 7 C -0.076 4.076 8 C -0.108 4.108 9 C -0.079 4.079 10 C 0.133 3.867 11 N -1.125 6.125 12 S 2.677 3.323 13 O -1.011 7.011 14 O -1.012 7.012 15 C -1.015 5.015 16 H 0.121 0.879 17 C 0.153 3.847 18 N -0.825 5.825 19 Si 0.802 3.198 20 H -0.247 1.247 21 H -0.256 1.256 22 H -0.220 1.220 23 H 0.100 0.900 24 H 0.052 0.948 25 H 0.056 0.944 26 H 0.126 0.874 27 H 0.121 0.879 28 H 0.122 0.878 29 H 0.131 0.869 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.062 0.938 34 H 0.404 0.596 35 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.708 9.268 13.409 18.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.221 6.221 3 C 0.087 3.913 4 C -0.228 4.228 5 C -0.105 4.105 6 C -0.176 4.176 7 C -0.094 4.094 8 C -0.110 4.110 9 C -0.118 4.118 10 C 0.006 3.994 11 N -0.881 5.881 12 S 2.778 3.222 13 O -1.001 7.001 14 O -1.002 7.002 15 C -1.150 5.150 16 H 0.139 0.861 17 C -0.066 4.066 18 N -0.454 5.454 19 Si 0.623 3.377 20 H -0.170 1.170 21 H -0.180 1.180 22 H -0.142 1.142 23 H 0.119 0.881 24 H 0.070 0.930 25 H 0.074 0.926 26 H 0.144 0.856 27 H 0.139 0.861 28 H 0.140 0.860 29 H 0.149 0.851 30 H 0.095 0.905 31 H 0.100 0.900 32 H 0.096 0.904 33 H 0.081 0.919 34 H 0.236 0.764 35 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -10.026 8.266 13.027 18.400 hybrid contribution 0.071 0.120 -0.356 0.382 sum -9.956 8.386 12.671 18.166 Atomic orbital electron populations 1.23066 0.78572 1.04116 1.01034 1.86152 1.21157 1.26511 1.88273 1.18909 0.91873 0.84384 0.96154 1.21204 0.99915 0.92403 1.09312 1.20897 0.94727 0.96809 0.98057 1.21030 0.93895 0.98367 1.04286 1.20966 1.00143 0.90954 0.97369 1.19197 0.90508 0.95836 1.05455 1.20650 0.99194 0.94263 0.97691 1.21049 0.95932 0.86280 0.96092 1.55446 1.62324 1.38175 1.32134 1.01269 0.74101 0.73160 0.73630 1.93470 1.67172 1.54267 1.85183 1.93400 1.38396 1.86092 1.82263 1.30490 1.56194 1.16555 1.11716 0.86118 1.24431 0.90029 0.97625 0.94558 1.69993 1.34951 1.37386 1.03111 0.87851 0.81422 0.84579 0.83897 1.17048 1.17974 1.14175 0.88125 0.92957 0.92565 0.85604 0.86070 0.85969 0.85114 0.90508 0.90036 0.90443 0.91946 0.76420 0.90981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.81 101.05 0.99 1.25 16 2 O -0.31 -4.23 9.64 -19.42 -0.19 -4.42 16 3 C 0.13 1.78 6.66 -39.22 -0.26 1.52 16 4 C -0.21 -2.36 9.04 -39.43 -0.36 -2.71 16 5 C -0.09 -0.89 10.04 -39.60 -0.40 -1.29 16 6 C -0.16 -1.66 10.04 -39.56 -0.40 -2.06 16 7 C -0.08 -0.90 9.68 -39.61 -0.38 -1.28 16 8 C -0.11 -1.47 5.15 -104.47 -0.54 -2.00 16 9 C -0.08 -1.11 5.21 -27.88 -0.15 -1.25 16 10 C 0.13 2.38 6.20 -4.04 -0.03 2.35 16 11 N -1.12 -22.14 6.00 -10.61 -0.06 -22.20 16 12 S 2.68 68.53 4.24 -107.50 -0.46 68.07 16 13 O -1.01 -27.64 16.02 -57.17 -0.92 -28.55 16 14 O -1.01 -27.79 16.30 -57.17 -0.93 -28.72 16 15 C -1.02 -28.94 10.26 30.60 0.31 -28.62 16 16 H 0.12 3.46 8.06 -52.49 -0.42 3.04 16 17 C 0.15 4.48 5.47 -17.83 -0.10 4.38 16 18 N -0.83 -24.24 13.96 55.43 0.77 -23.47 16 19 Si 0.80 21.01 26.54 -169.99 -4.51 16.50 16 20 H -0.25 -6.31 7.11 56.52 0.40 -5.90 16 21 H -0.26 -6.13 7.11 56.52 0.40 -5.72 16 22 H -0.22 -5.85 5.61 56.52 0.32 -5.54 16 23 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 24 H 0.05 0.39 7.65 -51.93 -0.40 -0.01 16 25 H 0.06 0.49 7.67 -51.93 -0.40 0.09 16 26 H 0.13 1.13 6.30 -52.49 -0.33 0.80 16 27 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 28 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 29 H 0.13 1.31 8.06 -52.48 -0.42 0.89 16 30 H 0.08 0.91 8.05 -51.93 -0.42 0.49 16 31 H 0.08 1.13 7.70 -51.93 -0.40 0.73 16 32 H 0.08 1.50 7.75 -51.93 -0.40 1.10 16 33 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 34 H 0.40 6.69 8.65 -34.48 -0.30 6.39 16 35 H 0.28 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 310.67 15.07 4.68 4.68 Total: -1.00 -34.88 310.67 -7.31 -42.18 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -4.40 Total: 5.65 kcal Atomic # 6 Polarization: -28.43 SS G_CDS: -1.30 Total: -29.72 kcal Atomic # 7 Polarization: -46.38 SS G_CDS: 0.71 Total: -45.67 kcal Atomic # 8 Polarization: -59.65 SS G_CDS: -2.04 Total: -61.69 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.51 Total: 16.50 kcal Atomic # 16 Polarization: 68.53 SS G_CDS: -0.46 Total: 68.07 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -34.88 -7.31 -42.18 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221863028.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.404 kcal (2) G-P(sol) polarization free energy of solvation -34.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds