Wall clock time and date at job start Tue Mar 31 2020 05:37:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35899 * 116.99769 * 2 1 4 4 C 1.38749 * 120.05764 * 0.24762 * 3 2 1 5 5 C 1.38124 * 119.94616 * 180.32030 * 4 3 2 6 6 C 1.38294 * 120.04986 * 359.68533 * 5 4 3 7 7 C 1.38236 * 120.11395 * 0.02562 * 6 5 4 8 8 C 1.38159 * 120.05848 * 0.02562 * 7 6 5 9 9 C 1.50701 * 120.03133 * 179.97438 * 8 7 6 10 10 C 1.52997 * 109.47212 * 265.00010 * 9 8 7 11 11 N 1.46500 * 109.47473 * 179.97438 * 10 9 8 12 12 S 1.65601 * 120.00009 * 164.99896 * 11 10 9 13 13 O 1.42107 * 106.39878 * 178.54176 * 12 11 10 14 14 O 1.42099 * 106.40193 * 311.46062 * 12 11 10 15 15 C 1.76200 * 107.21950 * 65.00368 * 12 11 10 16 16 H 1.08001 * 119.99415 * 359.97438 * 15 12 11 17 17 C 1.37868 * 120.00302 * 179.97438 * 15 12 11 18 18 N 1.31509 * 120.00251 * 179.97438 * 17 15 12 19 19 Si 1.86807 * 119.99774 * 0.02562 * 17 15 12 20 20 H 1.48493 * 109.47222 * 90.00006 * 19 17 15 21 21 H 1.48503 * 109.46812 * 210.00180 * 19 17 15 22 22 H 1.48503 * 109.47077 * 329.99836 * 19 17 15 23 23 H 1.08998 * 109.47124 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47142 * 300.00353 * 1 2 3 25 25 H 1.09006 * 109.47170 * 60.00300 * 1 2 3 26 26 H 1.08002 * 120.03011 * 0.02562 * 4 3 2 27 27 H 1.07994 * 119.97736 * 179.70050 * 5 4 3 28 28 H 1.08004 * 119.94098 * 180.02562 * 6 5 4 29 29 H 1.08003 * 119.97210 * 180.02562 * 7 6 5 30 30 H 1.09002 * 109.47060 * 25.00065 * 9 8 7 31 31 H 1.09001 * 109.47380 * 145.00153 * 9 8 7 32 32 H 1.09002 * 109.47153 * 299.99998 * 10 9 8 33 33 H 1.08998 * 109.47533 * 59.99628 * 10 9 8 34 34 H 0.96999 * 119.99516 * 345.00722 * 11 10 9 35 35 H 0.97000 * 120.00062 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2914 2.3753 0.0052 5 6 1.9208 3.6048 -0.0015 6 6 3.3019 3.6757 -0.0068 7 6 4.0559 2.5171 -0.0060 8 6 3.4311 1.2849 -0.0003 9 6 4.2537 0.0222 0.0000 10 6 4.4215 -0.4776 -1.4362 11 7 5.2217 -1.7048 -1.4360 12 16 5.2578 -2.6699 -2.7812 13 8 6.1362 -3.7456 -2.4798 14 8 3.9060 -2.8579 -3.1767 15 6 6.0283 -1.7439 -4.0671 16 1 6.3694 -0.7369 -3.8773 17 6 6.1957 -2.3047 -5.3154 18 7 6.7703 -1.6133 -6.2752 19 14 5.6050 -4.0462 -5.6437 20 1 4.1996 -4.0104 -6.1216 21 1 6.4644 -4.6733 -6.6798 22 1 5.6817 -4.8394 -4.3906 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3634 0.5138 -0.8901 26 1 0.2128 2.3203 0.0097 27 1 1.3339 4.5113 -0.0024 28 1 3.7922 4.6381 -0.0116 29 1 5.1344 2.5752 -0.0097 30 1 5.2341 0.2273 0.4302 31 1 3.7489 -0.7402 0.5934 32 1 3.4412 -0.6828 -1.8664 33 1 4.9262 0.2847 -2.0297 34 1 5.7302 -1.9520 -0.6479 35 1 6.8884 -2.0081 -7.1534 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000221863028.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:59 Heat of formation + Delta-G solvation = -125.210411 kcal Electronic energy + Delta-G solvation = -20317.330228 eV Core-core repulsion = 17020.290029 eV Total energy + Delta-G solvation = -3297.040199 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.087 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.15746 -38.37619 -37.70479 -36.81306 -36.48909 -35.18819 -33.32653 -31.00141 -29.08483 -28.55601 -27.95357 -24.40047 -23.00329 -22.11177 -21.04062 -19.49404 -18.90005 -18.53128 -17.39001 -17.26488 -16.96072 -16.53669 -16.37560 -15.78045 -15.49446 -15.28251 -15.25334 -14.92363 -14.42146 -14.22354 -13.75361 -13.50232 -13.37198 -13.07836 -12.80227 -12.72027 -12.65062 -12.57303 -12.54104 -12.06704 -11.94751 -11.84050 -11.57479 -11.33563 -11.20975 -10.24055 -9.75775 -9.04626 -8.96341 -7.52282 0.13672 0.42729 0.54902 1.05065 1.14770 1.22210 1.89783 2.41794 2.45744 2.57313 2.85654 3.31801 3.82954 3.92221 4.09132 4.16104 4.18368 4.32256 4.36359 4.41246 4.50238 4.56469 4.62553 4.74923 4.75257 4.85415 4.96955 5.15048 5.26632 5.39310 5.46173 5.57491 5.65987 5.94012 6.01087 6.33870 6.52194 6.53814 8.21404 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.023674 B = 0.004606 C = 0.004374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.434134 B = 6078.194618 C = 6399.740464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.337 6.337 3 C 0.111 3.889 4 C -0.215 4.215 5 C -0.086 4.086 6 C -0.162 4.162 7 C -0.084 4.084 8 C -0.136 4.136 9 C -0.068 4.068 10 C 0.129 3.871 11 N -1.109 6.109 12 S 2.698 3.302 13 O -1.028 7.028 14 O -1.032 7.032 15 C -1.038 5.038 16 H 0.107 0.893 17 C 0.108 3.892 18 N -0.854 5.854 19 Si 0.826 3.174 20 H -0.240 1.240 21 H -0.218 1.218 22 H -0.229 1.229 23 H 0.109 0.891 24 H 0.072 0.928 25 H 0.061 0.939 26 H 0.146 0.854 27 H 0.150 0.850 28 H 0.147 0.853 29 H 0.144 0.856 30 H 0.099 0.901 31 H 0.079 0.921 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.421 0.579 35 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.360 10.104 14.273 20.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.251 6.251 3 C 0.066 3.934 4 C -0.234 4.234 5 C -0.104 4.104 6 C -0.180 4.180 7 C -0.102 4.102 8 C -0.137 4.137 9 C -0.106 4.106 10 C 0.003 3.997 11 N -0.870 5.870 12 S 2.798 3.202 13 O -1.018 7.018 14 O -1.021 7.021 15 C -1.171 5.171 16 H 0.125 0.875 17 C -0.109 4.109 18 N -0.484 5.484 19 Si 0.643 3.357 20 H -0.163 1.163 21 H -0.140 1.140 22 H -0.151 1.151 23 H 0.127 0.873 24 H 0.091 0.909 25 H 0.079 0.921 26 H 0.163 0.837 27 H 0.168 0.832 28 H 0.165 0.835 29 H 0.162 0.838 30 H 0.117 0.883 31 H 0.098 0.902 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.257 0.743 35 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -10.659 9.105 13.873 19.722 hybrid contribution 0.229 -0.008 -0.563 0.608 sum -10.430 9.097 13.310 19.201 Atomic orbital electron populations 1.23305 0.76850 1.05164 1.02260 1.86099 1.23177 1.27246 1.88549 1.19199 0.92250 0.85012 0.96982 1.21501 1.00999 0.92111 1.08784 1.21316 0.95038 0.97541 0.96484 1.21390 0.94255 0.98999 1.03318 1.21226 1.01095 0.90845 0.97033 1.19294 0.90854 0.96024 1.07545 1.20527 1.00666 0.94720 0.94718 1.21202 0.94368 0.85126 0.98986 1.54953 1.62701 1.38333 1.30993 1.00458 0.73101 0.72874 0.73782 1.93435 1.67587 1.55283 1.85543 1.93371 1.39019 1.86496 1.83233 1.30974 1.56352 1.16550 1.13177 0.87521 1.25172 0.90340 1.00612 0.94766 1.70010 1.35620 1.38863 1.03900 0.87482 0.82290 0.81391 0.84583 1.16320 1.13983 1.15139 0.87307 0.90926 0.92061 0.83652 0.83181 0.83536 0.83798 0.88300 0.90227 0.92441 0.92140 0.74345 0.89820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 9.81 113.37 1.11 1.45 16 2 O -0.34 -9.19 9.64 -92.42 -0.89 -10.08 16 3 C 0.11 2.90 6.66 22.51 0.15 3.05 16 4 C -0.22 -4.46 9.04 22.36 0.20 -4.26 16 5 C -0.09 -1.54 10.04 22.26 0.22 -1.31 16 6 C -0.16 -3.01 10.04 22.28 0.22 -2.79 16 7 C -0.08 -1.85 9.68 22.25 0.22 -1.63 16 8 C -0.14 -3.57 5.15 -19.77 -0.10 -3.67 16 9 C -0.07 -1.84 5.21 29.85 0.16 -1.69 16 10 C 0.13 4.62 6.20 86.38 0.54 5.16 16 11 N -1.11 -43.21 6.00 -187.49 -1.12 -44.34 16 12 S 2.70 138.04 4.24 -56.49 -0.24 137.80 16 13 O -1.03 -55.79 16.02 -128.00 -2.05 -57.84 16 14 O -1.03 -56.75 16.30 -128.00 -2.09 -58.83 16 15 C -1.04 -59.85 10.26 67.73 0.69 -59.16 16 16 H 0.11 6.26 8.06 -2.91 -0.02 6.24 16 17 C 0.11 6.32 5.47 84.65 0.46 6.79 16 18 N -0.85 -50.24 13.96 21.44 0.30 -49.94 16 19 Si 0.83 41.95 26.54 68.60 1.82 43.77 16 20 H -0.24 -11.84 7.11 99.48 0.71 -11.13 16 21 H -0.22 -9.69 7.11 99.48 0.71 -8.98 16 22 H -0.23 -11.95 5.61 99.48 0.56 -11.39 16 23 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 24 H 0.07 0.97 7.65 -2.39 -0.02 0.95 16 25 H 0.06 1.01 7.67 -2.38 -0.02 0.99 16 26 H 0.15 2.29 6.30 -2.91 -0.02 2.27 16 27 H 0.15 1.75 8.06 -2.91 -0.02 1.73 16 28 H 0.15 1.95 8.06 -2.91 -0.02 1.93 16 29 H 0.14 2.64 8.06 -2.91 -0.02 2.61 16 30 H 0.10 2.19 8.05 -2.39 -0.02 2.18 16 31 H 0.08 2.18 7.70 -2.39 -0.02 2.16 16 32 H 0.06 2.28 7.75 -2.39 -0.02 2.26 16 33 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 34 H 0.42 13.49 8.65 -96.74 -0.84 12.65 16 35 H 0.29 15.40 8.31 -92.71 -0.77 14.63 16 Total: -1.00 -74.34 310.67 -0.28 -74.62 By element: Atomic # 1 Polarization: 22.80 SS G_CDS: 0.12 Total: 22.92 kcal Atomic # 6 Polarization: -61.95 SS G_CDS: 3.87 Total: -58.07 kcal Atomic # 7 Polarization: -93.46 SS G_CDS: -0.83 Total: -94.28 kcal Atomic # 8 Polarization: -121.73 SS G_CDS: -5.03 Total: -126.76 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 1.82 Total: 43.77 kcal Atomic # 16 Polarization: 138.04 SS G_CDS: -0.24 Total: 137.80 kcal Total: -74.34 -0.28 -74.62 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221863028.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.593 kcal (2) G-P(sol) polarization free energy of solvation -74.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds