Wall clock time and date at job start Tue Mar 31 2020 05:38:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35905 * 116.99604 * 2 1 4 4 C 1.38745 * 120.05685 * 359.72933 * 3 2 1 5 5 C 1.38130 * 119.94480 * 179.69913 * 4 3 2 6 6 C 1.38291 * 120.05012 * 0.59399 * 5 4 3 7 7 C 1.38246 * 120.11190 * 359.67962 * 6 5 4 8 8 C 1.50703 * 119.97077 * 179.97438 * 7 6 5 9 9 C 1.52997 * 109.46906 * 270.02263 * 8 7 6 10 10 N 1.46510 * 109.46850 * 179.97438 * 9 8 7 11 11 S 1.65607 * 119.99714 * 164.99872 * 10 9 8 12 12 O 1.42100 * 106.39648 * 178.54009 * 11 10 9 13 13 O 1.42104 * 106.40225 * 311.46024 * 11 10 9 14 14 C 1.76190 * 107.21731 * 65.00126 * 11 10 9 15 15 H 1.08009 * 120.00688 * 359.97438 * 14 11 10 16 16 C 1.37877 * 120.00052 * 179.97438 * 14 11 10 17 17 N 1.31510 * 120.00015 * 359.97438 * 16 14 11 18 18 Si 1.86805 * 120.00302 * 180.02562 * 16 14 11 19 19 H 1.48492 * 109.47337 * 89.99633 * 18 16 14 20 20 H 1.48505 * 109.47164 * 210.00032 * 18 16 14 21 21 H 1.48504 * 109.46651 * 329.99673 * 18 16 14 22 22 C 1.38159 * 120.05555 * 0.02562 * 7 6 5 23 23 H 1.08996 * 109.47352 * 299.99771 * 1 2 3 24 24 H 1.08999 * 109.47144 * 59.99795 * 1 2 3 25 25 H 1.08995 * 109.47253 * 179.97438 * 1 2 3 26 26 H 1.07997 * 120.03176 * 359.97124 * 4 3 2 27 27 H 1.07997 * 119.97739 * 180.29791 * 5 4 3 28 28 H 1.08001 * 119.94552 * 179.70178 * 6 5 4 29 29 H 1.09002 * 109.47303 * 30.02167 * 8 7 6 30 30 H 1.09000 * 109.47206 * 150.02292 * 8 7 6 31 31 H 1.08995 * 109.47455 * 299.99525 * 9 8 7 32 32 H 1.08993 * 109.47459 * 60.00249 * 9 8 7 33 33 H 0.96992 * 119.99710 * 345.00049 * 10 9 8 34 34 H 0.97004 * 120.00180 * 179.97438 * 17 16 14 35 35 H 1.08006 * 120.02917 * 180.02562 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2914 2.3753 -0.0057 5 6 1.9207 3.6048 0.0006 6 6 3.3018 3.6759 0.0002 7 6 4.0559 2.5172 0.0001 8 6 5.5607 2.5983 -0.0010 9 6 6.0689 2.6257 -1.4438 10 7 7.5318 2.7052 -1.4449 11 16 8.3777 2.3792 -2.8308 12 8 9.7502 2.5739 -2.5182 13 8 7.8619 1.1558 -3.3374 14 6 7.9536 3.6223 -4.0052 15 1 7.2534 4.4003 -3.7391 16 6 8.5157 3.6018 -5.2640 17 7 9.3687 2.6548 -5.5880 18 14 8.0666 4.9201 -6.5090 19 1 9.0052 6.0635 -6.3796 20 1 8.1579 4.3576 -7.8804 21 1 6.6797 5.3872 -6.2568 22 6 3.4311 1.2849 -0.0001 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 0.2128 2.3203 -0.0106 27 1 1.3339 4.5114 0.0011 28 1 3.7922 4.6381 0.0002 29 1 5.8760 3.5065 0.5126 30 1 5.9718 1.7291 0.5125 31 1 5.7537 1.7175 -1.9574 32 1 5.6579 3.4948 -1.9574 33 1 8.0048 2.9487 -0.6339 34 1 9.7639 2.6402 -6.4738 35 1 4.0206 0.3800 0.0003 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229784119.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:02 Heat of formation + Delta-G solvation = -114.785517 kcal Electronic energy + Delta-G solvation = -19804.688857 eV Core-core repulsion = 16508.100715 eV Total energy + Delta-G solvation = -3296.588142 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.087 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.22419 -37.89923 -35.38856 -34.98350 -33.89990 -33.05515 -31.93576 -30.53495 -27.84582 -27.18804 -26.09537 -23.10263 -22.52506 -20.87826 -18.96742 -17.91886 -17.23172 -16.38158 -16.09143 -16.04529 -15.88554 -15.40294 -14.86681 -14.58040 -14.03093 -13.88875 -13.43537 -13.36413 -13.13335 -12.81448 -12.15503 -12.00044 -11.82459 -11.66443 -11.29987 -11.21157 -11.18904 -11.04580 -10.85614 -10.57606 -10.27333 -10.24038 -10.13931 -9.21647 -8.98480 -8.85125 -8.43274 -8.25636 -6.66734 -5.28323 1.24993 1.40604 2.39686 3.09025 3.13399 3.15789 3.22268 3.70118 4.09319 4.62011 4.67790 4.68562 4.88886 4.90439 4.93127 5.06412 5.21538 5.24372 5.31409 5.39807 5.45025 5.60777 5.79934 5.85473 5.99419 6.20696 6.22552 6.29672 6.36901 6.55674 6.61825 6.72538 6.88268 7.30173 7.35545 7.94227 8.01997 8.92506 10.27485 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.021341 B = 0.003895 C = 0.003707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.705343 B = 7186.372641 C = 7550.991644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.318 6.318 3 C 0.126 3.874 4 C -0.215 4.215 5 C -0.080 4.080 6 C -0.151 4.151 7 C -0.036 4.036 8 C -0.090 4.090 9 C 0.132 3.868 10 N -1.139 6.139 11 S 2.716 3.284 12 O -1.008 7.008 13 O -1.007 7.007 14 C -1.021 5.021 15 H 0.102 0.898 16 C 0.133 3.867 17 N -0.846 5.846 18 Si 0.920 3.080 19 H -0.267 1.267 20 H -0.275 1.275 21 H -0.263 1.263 22 C -0.145 4.145 23 H 0.053 0.947 24 H 0.055 0.945 25 H 0.098 0.902 26 H 0.124 0.876 27 H 0.123 0.877 28 H 0.126 0.874 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.061 0.939 33 H 0.401 0.599 34 H 0.290 0.710 35 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.794 1.046 11.528 20.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.231 6.231 3 C 0.081 3.919 4 C -0.234 4.234 5 C -0.099 4.099 6 C -0.169 4.169 7 C -0.037 4.037 8 C -0.129 4.129 9 C 0.005 3.995 10 N -0.893 5.893 11 S 2.816 3.184 12 O -0.998 6.998 13 O -0.997 6.997 14 C -1.154 5.154 15 H 0.120 0.880 16 C -0.085 4.085 17 N -0.475 5.475 18 Si 0.744 3.256 19 H -0.192 1.192 20 H -0.200 1.200 21 H -0.187 1.187 22 C -0.164 4.164 23 H 0.072 0.928 24 H 0.073 0.927 25 H 0.116 0.884 26 H 0.142 0.858 27 H 0.141 0.859 28 H 0.144 0.856 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.095 0.905 32 H 0.080 0.920 33 H 0.232 0.768 34 H 0.101 0.899 35 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -16.102 -0.052 11.123 19.570 hybrid contribution -0.703 1.503 -0.556 1.750 sum -16.806 1.451 10.566 19.904 Atomic orbital electron populations 1.23026 0.78627 1.03799 1.01220 1.86086 1.21189 1.27062 1.88798 1.19000 0.92302 0.84075 0.96552 1.21183 0.99787 0.92509 1.09905 1.20899 0.94594 0.96859 0.97510 1.21023 0.93680 0.98239 1.03978 1.19627 0.95542 0.92194 0.96292 1.20884 0.90254 1.03755 0.97996 1.21003 0.80557 1.02378 0.95527 1.55993 1.14546 1.89236 1.29556 1.00359 0.71739 0.74860 0.71489 1.93372 1.33988 1.87877 1.84553 1.93358 1.80697 1.46717 1.78904 1.30566 1.39747 1.31644 1.13477 0.87996 1.24742 0.90787 0.95167 0.97812 1.69898 1.24037 1.30525 1.23071 0.86176 0.79870 0.80669 0.78905 1.19219 1.19986 1.18682 1.20385 0.91299 0.98542 1.06179 0.92829 0.92673 0.88362 0.85783 0.85882 0.85615 0.90098 0.90064 0.90523 0.92029 0.76795 0.89919 0.84898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.32 -3.79 10.50 -19.44 -0.20 -3.99 16 3 C 0.13 1.58 6.69 -39.22 -0.26 1.32 16 4 C -0.22 -2.32 9.04 -39.43 -0.36 -2.68 16 5 C -0.08 -0.85 10.04 -39.60 -0.40 -1.25 16 6 C -0.15 -1.75 9.70 -39.56 -0.38 -2.13 16 7 C -0.04 -0.46 5.13 -104.65 -0.54 -0.99 16 8 C -0.09 -1.17 5.48 -27.88 -0.15 -1.32 16 9 C 0.13 2.26 6.20 -4.04 -0.03 2.23 16 10 N -1.14 -22.32 6.00 -10.61 -0.06 -22.39 16 11 S 2.72 72.37 5.02 -107.50 -0.54 71.83 16 12 O -1.01 -29.64 18.02 -57.17 -1.03 -30.67 16 13 O -1.01 -29.71 17.49 -57.17 -1.00 -30.71 16 14 C -1.02 -28.30 9.72 30.60 0.30 -28.00 16 15 H 0.10 2.58 7.81 -52.48 -0.41 2.17 16 16 C 0.13 3.74 5.46 -17.82 -0.10 3.64 16 17 N -0.85 -25.13 13.19 55.43 0.73 -24.40 16 18 Si 0.92 20.74 29.54 -169.99 -5.02 15.72 16 19 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 20 H -0.27 -5.95 7.11 56.52 0.40 -5.54 16 21 H -0.26 -5.71 7.11 56.52 0.40 -5.30 16 22 C -0.15 -1.93 9.64 -39.44 -0.38 -2.31 16 23 H 0.05 0.33 7.67 -51.93 -0.40 -0.07 16 24 H 0.05 0.37 7.65 -51.93 -0.40 -0.03 16 25 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.12 1.03 6.30 -52.49 -0.33 0.70 16 27 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 28 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 29 H 0.08 0.90 8.09 -51.93 -0.42 0.48 16 30 H 0.08 0.99 8.08 -51.93 -0.42 0.57 16 31 H 0.08 1.41 7.75 -51.93 -0.40 1.01 16 32 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.40 6.66 8.65 -34.48 -0.30 6.36 16 34 H 0.29 7.74 8.31 -40.82 -0.34 7.41 16 35 H 0.13 1.71 8.06 -52.48 -0.42 1.29 16 LS Contribution 318.77 15.07 4.80 4.80 Total: -1.00 -36.39 318.77 -7.95 -44.35 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -4.33 Total: 5.75 kcal Atomic # 6 Polarization: -28.99 SS G_CDS: -1.30 Total: -30.29 kcal Atomic # 7 Polarization: -47.45 SS G_CDS: 0.67 Total: -46.78 kcal Atomic # 8 Polarization: -63.14 SS G_CDS: -2.23 Total: -65.37 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Atomic # 16 Polarization: 72.37 SS G_CDS: -0.54 Total: 71.83 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -36.39 -7.95 -44.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229784119.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.440 kcal (2) G-P(sol) polarization free energy of solvation -36.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds