Wall clock time and date at job start Tue Mar 31 2020 05:46:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31574 * 1 3 3 Si 1.86801 * 119.99815 * 2 1 4 4 H 1.48495 * 109.47227 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47084 * 300.00176 * 3 2 1 6 6 H 1.48499 * 109.47145 * 60.00105 * 3 2 1 7 7 C 1.38629 * 120.00198 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99902 * 179.97438 * 7 2 1 9 9 O 1.34812 * 120.00168 * 359.97438 * 7 2 1 10 10 C 1.35772 * 117.00383 * 174.96432 * 9 7 2 11 11 C 1.38920 * 119.99356 * 5.34950 * 10 9 7 12 12 C 1.37994 * 120.00237 * 180.02562 * 11 10 9 13 13 C 1.38944 * 119.99746 * 359.97438 * 12 11 10 14 14 N 1.39917 * 120.00279 * 180.02562 * 13 12 11 15 15 C 1.34768 * 119.99935 * 35.13442 * 14 13 12 16 16 O 1.21566 * 120.00524 * 355.48702 * 15 14 13 17 17 C 1.47810 * 119.99902 * 175.48352 * 15 14 13 18 18 C 1.39962 * 120.93832 * 179.97438 * 17 15 14 19 19 N 1.32146 * 118.91854 * 179.97438 * 18 17 15 20 20 C 1.31878 * 120.96715 * 0.02562 * 19 18 17 21 21 N 1.31864 * 122.10077 * 0.02562 * 20 19 18 22 22 C 1.32145 * 120.97113 * 359.97438 * 21 20 19 23 23 C 1.38940 * 119.99459 * 0.27808 * 13 12 11 24 24 C 1.38005 * 119.99255 * 359.46680 * 23 13 12 25 25 H 0.96994 * 120.00503 * 359.97438 * 1 2 3 26 26 H 1.07995 * 119.99974 * 359.97438 * 11 10 9 27 27 H 1.07997 * 120.00301 * 179.97438 * 12 11 10 28 28 H 0.97005 * 119.99578 * 215.13274 * 14 13 12 29 29 H 1.07996 * 120.54454 * 359.96078 * 18 17 15 30 30 H 1.08001 * 118.94320 * 179.72335 * 20 19 18 31 31 H 1.07999 * 120.54110 * 179.97438 * 22 21 20 32 32 H 1.07998 * 120.00456 * 179.72564 * 23 13 12 33 33 H 1.07999 * 119.99695 * 180.23257 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 3.7097 1.3465 -0.0006 5 1 1.8909 2.3965 -1.2125 6 1 1.8909 2.3965 1.2125 7 6 2.0089 -1.2005 -0.0005 8 1 3.0890 -1.2005 -0.0010 9 8 1.3349 -2.3681 -0.0005 10 6 2.0703 -3.5044 -0.1073 11 6 3.4579 -3.4371 -0.0981 12 6 4.2054 -4.5918 -0.2071 13 6 3.5704 -5.8220 -0.3255 14 7 4.3283 -6.9929 -0.4354 15 6 5.4943 -7.1060 0.2308 16 8 5.9282 -6.1615 0.8613 17 6 6.2455 -8.3784 0.1951 18 6 7.4585 -8.5173 0.8794 19 7 8.0966 -9.6730 0.8207 20 6 7.6065 -10.6845 0.1308 21 7 6.4681 -10.5966 -0.5289 22 6 5.7643 -9.4781 -0.5247 23 6 2.1826 -5.8887 -0.3399 24 6 1.4353 -4.7342 -0.2256 25 1 -0.4850 0.8400 0.0004 26 1 3.9515 -2.4809 -0.0065 27 1 5.2841 -4.5395 -0.2004 28 1 4.0144 -7.7234 -0.9912 29 1 7.8666 -7.6934 1.4459 30 1 8.1574 -11.6129 0.1014 31 1 4.8331 -9.4136 -1.0678 32 1 1.6889 -6.8443 -0.4363 33 1 0.3565 -4.7863 -0.2330 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230872717.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:45 Heat of formation + Delta-G solvation = 25.049520 kcal Electronic energy + Delta-G solvation = -20476.507151 eV Core-core repulsion = 17082.831512 eV Total energy + Delta-G solvation = -3393.675640 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.090 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.57651 -40.01154 -38.68259 -36.61287 -34.57619 -33.91761 -32.65601 -32.14198 -30.28104 -28.18153 -25.74487 -25.18007 -24.84482 -22.56973 -21.78066 -20.47682 -18.72109 -18.10215 -18.01117 -17.69516 -16.86662 -16.28490 -15.60527 -14.94625 -14.77782 -14.52796 -14.20619 -14.07044 -13.88257 -13.67713 -13.63094 -12.96225 -12.66619 -11.98797 -11.84178 -11.65562 -11.59114 -11.33355 -11.08662 -10.81067 -10.45077 -10.14054 -9.98498 -9.80876 -9.74412 -9.26537 -8.76724 -8.28504 -7.03481 -6.49482 -4.06951 0.02381 0.58687 2.02155 2.14809 2.71910 2.97096 3.11515 3.13014 3.18597 3.45296 3.59267 3.72537 3.94032 4.01533 4.31920 4.47160 4.62038 4.87128 5.04983 5.19304 5.29177 5.59080 5.66554 5.82062 6.00729 6.08697 6.23841 6.39244 6.62941 6.76189 6.90715 6.99663 7.23588 7.37006 7.47733 7.54815 7.67717 7.95543 8.10255 8.96303 9.64480 10.68265 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.040244 B = 0.003015 C = 0.002834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.583381 B = 9285.428092 C = 9877.922857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.039 3.961 3 Si 0.941 3.059 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.275 1.275 7 C -0.391 4.391 8 H 0.094 0.906 9 O -0.174 6.174 10 C 0.149 3.851 11 C -0.221 4.221 12 C -0.061 4.061 13 C 0.026 3.974 14 N -0.649 5.649 15 C 0.558 3.442 16 O -0.514 6.514 17 C -0.234 4.234 18 C 0.208 3.792 19 N -0.521 5.521 20 C 0.310 3.690 21 N -0.522 5.522 22 C 0.181 3.819 23 C -0.088 4.088 24 C -0.178 4.178 25 H 0.270 0.730 26 H 0.132 0.868 27 H 0.126 0.874 28 H 0.400 0.600 29 H 0.183 0.817 30 H 0.202 0.798 31 H 0.172 0.828 32 H 0.116 0.884 33 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.662 -17.429 -1.924 20.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.190 1.190 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.467 4.467 8 H 0.111 0.889 9 O -0.077 6.077 10 C 0.095 3.905 11 C -0.241 4.241 12 C -0.080 4.080 13 C -0.066 4.066 14 N -0.293 5.293 15 C 0.343 3.657 16 O -0.391 6.391 17 C -0.241 4.241 18 C 0.041 3.959 19 N -0.234 5.234 20 C 0.023 3.977 21 N -0.235 5.235 22 C 0.014 3.986 23 C -0.109 4.109 24 C -0.198 4.198 25 H 0.080 0.920 26 H 0.149 0.851 27 H 0.144 0.856 28 H 0.236 0.764 29 H 0.200 0.800 30 H 0.218 0.782 31 H 0.189 0.811 32 H 0.134 0.866 33 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 11.059 -17.414 -1.459 20.681 hybrid contribution -0.182 1.130 -0.262 1.175 sum 10.878 -16.283 -1.721 19.658 Atomic orbital electron populations 1.70050 1.05977 1.27687 1.45849 1.25303 0.95860 0.98900 0.96447 0.85634 0.79230 0.80246 0.78282 1.18994 1.20108 1.20093 1.21406 0.91927 0.80739 1.52616 0.88863 1.83971 1.34374 1.11477 1.77898 1.19430 0.90281 0.88140 0.92694 1.21111 0.93559 0.98807 1.10641 1.20846 0.99821 0.90266 0.97111 1.17193 0.89862 0.84903 1.14655 1.43007 1.21270 1.17874 1.47130 1.17773 0.81386 0.86731 0.79769 1.90819 1.67389 1.38734 1.42108 1.21869 1.00119 0.97212 1.04935 1.23572 0.88012 0.94609 0.89678 1.68598 1.34608 1.00800 1.19432 1.25282 0.88818 0.97372 0.86181 1.68470 1.08135 1.26297 1.20606 1.23502 0.97486 0.86850 0.90779 1.20351 0.91275 0.97565 1.01665 1.19998 0.99560 0.89802 1.10436 0.91992 0.85076 0.85648 0.76424 0.79964 0.78165 0.81078 0.86612 0.85924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.90 13.67 55.48 0.76 -24.15 16 2 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 3 Si 0.94 20.36 29.55 -169.99 -5.02 15.34 16 4 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 5 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 6 H -0.28 -5.85 7.11 56.52 0.40 -5.44 16 7 C -0.39 -10.78 9.48 30.88 0.29 -10.49 16 8 H 0.09 2.40 5.20 -52.48 -0.27 2.12 16 9 O -0.17 -4.87 9.75 0.03 0.00 -4.87 16 10 C 0.15 3.51 6.65 -39.08 -0.26 3.25 16 11 C -0.22 -4.83 9.16 -39.42 -0.36 -5.19 16 12 C -0.06 -1.17 8.69 -39.41 -0.34 -1.51 16 13 C 0.03 0.43 6.30 -83.65 -0.53 -0.10 16 14 N -0.65 -8.05 5.29 -10.69 -0.06 -8.11 16 15 C 0.56 7.35 7.63 -12.35 -0.09 7.26 16 16 O -0.51 -8.71 13.88 5.31 0.07 -8.63 16 17 C -0.23 -2.38 5.91 -104.69 -0.62 -3.00 16 18 C 0.21 2.11 10.88 -16.77 -0.18 1.92 16 19 N -0.52 -5.06 10.42 -14.24 -0.15 -5.21 16 20 C 0.31 2.51 12.27 -92.02 -1.13 1.38 16 21 N -0.52 -4.60 10.42 -14.24 -0.15 -4.75 16 22 C 0.18 1.49 10.81 -16.77 -0.18 1.31 16 23 C -0.09 -1.45 9.96 -39.41 -0.39 -1.84 16 24 C -0.18 -3.55 9.98 -39.42 -0.39 -3.95 16 25 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 26 H 0.13 2.89 5.63 -52.49 -0.30 2.60 16 27 H 0.13 2.37 6.22 -52.49 -0.33 2.04 16 28 H 0.40 3.34 6.97 -40.82 -0.28 3.05 16 29 H 0.18 1.72 7.74 -52.49 -0.41 1.31 16 30 H 0.20 0.91 8.06 -52.49 -0.42 0.48 16 31 H 0.17 0.87 6.55 -52.49 -0.34 0.53 16 32 H 0.12 1.46 8.06 -52.49 -0.42 1.03 16 33 H 0.12 2.32 8.06 -52.49 -0.42 1.90 16 LS Contribution 298.31 15.07 4.50 4.50 Total: -1.00 -33.30 298.31 -6.67 -39.97 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -2.33 Total: 5.88 kcal Atomic # 6 Polarization: -5.69 SS G_CDS: -4.29 Total: -9.97 kcal Atomic # 7 Polarization: -42.62 SS G_CDS: 0.41 Total: -42.21 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: 0.07 Total: -13.50 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -33.30 -6.67 -39.97 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230872717.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.018 kcal (2) G-P(sol) polarization free energy of solvation -33.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds