Wall clock time and date at job start Tue Mar 31 2020 05:38:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35905 * 116.99604 * 2 1 4 4 C 1.38745 * 120.05685 * 359.72933 * 3 2 1 5 5 C 1.38130 * 119.94480 * 179.69913 * 4 3 2 6 6 C 1.38291 * 120.05012 * 0.59399 * 5 4 3 7 7 C 1.38246 * 120.11190 * 359.67962 * 6 5 4 8 8 C 1.50703 * 119.97077 * 179.97438 * 7 6 5 9 9 S 1.81404 * 109.47233 * 270.02290 * 8 7 6 10 10 O 1.42101 * 110.54195 * 291.62556 * 9 8 7 11 11 O 1.42099 * 110.54169 * 68.37436 * 9 8 7 12 12 N 1.65591 * 104.44947 * 179.97438 * 9 8 7 13 13 C 1.46503 * 119.99867 * 64.99944 * 12 9 8 14 14 C 1.50703 * 109.46882 * 164.99719 * 13 12 9 15 15 H 1.07995 * 120.00450 * 359.97438 * 14 13 12 16 16 C 1.37882 * 119.99653 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00128 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99725 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47243 * 90.00077 * 18 16 14 20 20 H 1.48496 * 109.47289 * 210.00058 * 18 16 14 21 21 H 1.48500 * 109.47338 * 330.00091 * 18 16 14 22 22 C 1.38159 * 120.05555 * 0.02562 * 7 6 5 23 23 H 1.08996 * 109.47352 * 299.99771 * 1 2 3 24 24 H 1.08999 * 109.47144 * 59.99795 * 1 2 3 25 25 H 1.08995 * 109.47253 * 179.97438 * 1 2 3 26 26 H 1.07997 * 120.03176 * 359.97124 * 4 3 2 27 27 H 1.07997 * 119.97739 * 180.29791 * 5 4 3 28 28 H 1.08001 * 119.94552 * 179.70178 * 6 5 4 29 29 H 1.09002 * 109.47303 * 30.02167 * 8 7 6 30 30 H 1.09000 * 109.47206 * 150.02292 * 8 7 6 31 31 H 0.96996 * 120.00509 * 244.99720 * 12 9 8 32 32 H 1.08994 * 109.47049 * 284.99662 * 13 12 9 33 33 H 1.09003 * 109.47285 * 45.00325 * 13 12 9 34 34 H 0.97002 * 119.99471 * 179.97438 * 17 16 14 35 35 H 1.08006 * 120.02917 * 180.02562 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2914 2.3753 -0.0057 5 6 1.9207 3.6048 0.0006 6 6 3.3018 3.6759 0.0002 7 6 4.0559 2.5172 0.0001 8 6 5.5607 2.5983 -0.0010 9 16 6.1633 2.6308 -1.7117 10 8 5.9338 1.3797 -2.3451 11 8 5.8006 3.8501 -2.3450 12 7 7.8106 2.7203 -1.5679 13 6 8.5551 1.6092 -0.9700 14 6 10.0214 1.7612 -1.2828 15 1 10.3644 2.6010 -1.8688 16 6 10.9251 0.8278 -0.8210 17 7 10.5074 -0.1952 -0.1079 18 14 12.7428 1.0165 -1.2081 19 1 13.3966 1.8131 -0.1388 20 1 13.3750 -0.3251 -1.2826 21 1 12.9020 1.7117 -2.5107 22 6 3.4311 1.2849 -0.0001 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 0.2128 2.3203 -0.0106 27 1 1.3339 4.5114 0.0011 28 1 3.7922 4.6381 0.0002 29 1 5.8760 3.5065 0.5126 30 1 5.9718 1.7291 0.5125 31 1 8.2826 3.5083 -1.8796 32 1 8.4115 1.6154 0.1104 33 1 8.1921 0.6665 -1.3795 34 1 11.1432 -0.8519 0.2167 35 1 4.0206 0.3800 0.0003 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000243013209.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:07 Heat of formation + Delta-G solvation = -90.546203 kcal Electronic energy + Delta-G solvation = -19967.447660 eV Core-core repulsion = 16671.910613 eV Total energy + Delta-G solvation = -3295.537046 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.087 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.27177 -37.79823 -36.57131 -35.41608 -34.62998 -32.80240 -32.16134 -30.64903 -27.76027 -26.98908 -26.71833 -22.72217 -22.50399 -21.50932 -18.90684 -17.93887 -17.47929 -16.46229 -16.31902 -16.12800 -15.88287 -15.66397 -15.44667 -14.67474 -14.41470 -13.96268 -13.53171 -13.44009 -12.89530 -12.68277 -12.44295 -12.15819 -12.11051 -11.83557 -11.78205 -11.56925 -11.46211 -11.44382 -11.02278 -10.95300 -10.75986 -10.64519 -10.11631 -9.44175 -9.05456 -8.79022 -8.34739 -8.19111 -6.19138 -4.23692 0.57670 1.27622 1.33582 3.07220 3.25009 3.31576 3.34236 3.43606 3.61189 4.17810 4.34315 4.49565 4.56042 4.66512 4.89129 4.90658 4.92300 5.16302 5.18301 5.20764 5.24987 5.35219 5.48655 5.70080 5.90037 6.12897 6.26803 6.40981 6.41041 6.57089 7.22453 7.24128 7.32405 7.78716 7.81241 8.16622 8.80614 9.41518 10.91312 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.028505 B = 0.003836 C = 0.003569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.048023 B = 7296.651712 C = 7843.009736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.314 6.314 3 C 0.128 3.872 4 C -0.207 4.207 5 C -0.079 4.079 6 C -0.145 4.145 7 C -0.043 4.043 8 C -0.596 4.596 9 S 2.610 3.390 10 O -0.952 6.952 11 O -0.973 6.973 12 N -1.106 6.106 13 C 0.241 3.759 14 C -0.530 4.530 15 H 0.066 0.934 16 C 0.061 3.939 17 N -0.891 5.891 18 Si 0.904 3.096 19 H -0.279 1.279 20 H -0.284 1.284 21 H -0.272 1.272 22 C -0.138 4.138 23 H 0.054 0.946 24 H 0.055 0.945 25 H 0.100 0.900 26 H 0.130 0.870 27 H 0.130 0.870 28 H 0.133 0.867 29 H 0.142 0.858 30 H 0.147 0.853 31 H 0.410 0.590 32 H 0.021 0.979 33 H 0.040 0.960 34 H 0.266 0.734 35 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.186 5.055 3.416 19.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.227 6.227 3 C 0.083 3.917 4 C -0.226 4.226 5 C -0.097 4.097 6 C -0.164 4.164 7 C -0.044 4.044 8 C -0.721 4.721 9 S 2.701 3.299 10 O -0.942 6.942 11 O -0.963 6.963 12 N -0.867 5.867 13 C 0.117 3.883 14 C -0.569 4.569 15 H 0.084 0.916 16 C -0.142 4.142 17 N -0.529 5.529 18 Si 0.731 3.269 19 H -0.205 1.205 20 H -0.210 1.210 21 H -0.197 1.197 22 C -0.157 4.157 23 H 0.073 0.927 24 H 0.074 0.926 25 H 0.118 0.882 26 H 0.148 0.852 27 H 0.148 0.852 28 H 0.151 0.849 29 H 0.161 0.839 30 H 0.165 0.835 31 H 0.244 0.756 32 H 0.039 0.961 33 H 0.058 0.942 34 H 0.076 0.924 35 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -18.606 4.476 2.789 19.339 hybrid contribution 1.118 0.444 0.604 1.346 sum -17.488 4.920 3.394 18.481 Atomic orbital electron populations 1.23064 0.78460 1.04006 1.01274 1.86110 1.21297 1.26695 1.88637 1.18919 0.92049 0.84322 0.96383 1.21283 1.00081 0.92395 1.08813 1.20912 0.94252 0.97155 0.97402 1.21103 0.94077 0.98104 1.03148 1.18809 0.92208 0.93185 1.00238 1.29802 1.00381 1.12869 1.29058 1.04925 0.74041 0.74330 0.76651 1.93587 1.84976 1.44559 1.71034 1.93531 1.83351 1.46641 1.72800 1.55543 1.23838 1.29636 1.77709 1.19137 0.92608 0.83836 0.92684 1.21194 0.90823 1.10249 1.34662 0.91580 1.24982 0.99588 0.94863 0.94810 1.69932 1.35158 1.12413 1.35389 0.86400 0.84054 0.77546 0.78857 1.20501 1.21004 1.19681 1.20473 0.91877 0.98471 1.04929 0.92698 0.92594 0.88174 0.85243 0.85236 0.84948 0.83933 0.83514 0.75594 0.96092 0.94179 0.92421 0.84033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.31 -3.94 10.50 -19.44 -0.20 -4.14 16 3 C 0.13 1.73 6.69 -39.22 -0.26 1.46 16 4 C -0.21 -2.30 9.04 -39.43 -0.36 -2.66 16 5 C -0.08 -0.87 10.04 -39.60 -0.40 -1.27 16 6 C -0.15 -1.87 9.70 -39.56 -0.38 -2.25 16 7 C -0.04 -0.62 5.14 -104.65 -0.54 -1.16 16 8 C -0.60 -8.71 6.20 36.01 0.22 -8.49 16 9 S 2.61 48.22 5.44 -107.50 -0.58 47.63 16 10 O -0.95 -21.03 17.50 -57.54 -1.01 -22.03 16 11 O -0.97 -19.06 18.08 -57.54 -1.04 -20.10 16 12 N -1.11 -22.26 5.88 -11.65 -0.07 -22.33 16 13 C 0.24 5.88 5.89 -5.19 -0.03 5.84 16 14 C -0.53 -14.17 9.27 -34.44 -0.32 -14.49 16 15 H 0.07 1.70 7.65 -52.49 -0.40 1.29 16 16 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 17 N -0.89 -25.28 13.29 55.43 0.74 -24.54 16 18 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 16 19 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 22 C -0.14 -2.07 9.64 -39.44 -0.38 -2.45 16 23 H 0.05 0.34 7.67 -51.93 -0.40 -0.06 16 24 H 0.06 0.37 7.65 -51.93 -0.40 -0.03 16 25 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.13 1.05 6.30 -52.49 -0.33 0.72 16 27 H 0.13 1.03 8.06 -52.49 -0.42 0.60 16 28 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 29 H 0.14 1.70 8.09 -51.92 -0.42 1.28 16 30 H 0.15 2.07 8.08 -51.92 -0.42 1.65 16 31 H 0.41 7.64 8.50 -34.47 -0.29 7.35 16 32 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.04 1.07 7.70 -51.93 -0.40 0.67 16 34 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 35 H 0.14 2.10 8.06 -52.48 -0.42 1.68 16 LS Contribution 318.81 15.07 4.80 4.80 Total: -1.00 -33.96 318.81 -8.24 -42.20 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -4.31 Total: 5.47 kcal Atomic # 6 Polarization: -21.15 SS G_CDS: -1.55 Total: -22.70 kcal Atomic # 7 Polarization: -47.54 SS G_CDS: 0.67 Total: -46.87 kcal Atomic # 8 Polarization: -44.03 SS G_CDS: -2.25 Total: -46.28 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Atomic # 16 Polarization: 48.22 SS G_CDS: -0.58 Total: 47.63 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -33.96 -8.24 -42.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000243013209.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.342 kcal (2) G-P(sol) polarization free energy of solvation -33.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds