Wall clock time and date at job start Tue Mar 31 2020 05:38:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35905 * 116.99604 * 2 1 4 4 C 1.38745 * 120.05685 * 359.72933 * 3 2 1 5 5 C 1.38130 * 119.94480 * 179.69913 * 4 3 2 6 6 C 1.38291 * 120.05012 * 0.59399 * 5 4 3 7 7 C 1.38246 * 120.11190 * 359.67962 * 6 5 4 8 8 C 1.50703 * 119.97077 * 179.97438 * 7 6 5 9 9 S 1.81404 * 109.47233 * 270.02290 * 8 7 6 10 10 O 1.42101 * 110.54195 * 291.62556 * 9 8 7 11 11 O 1.42099 * 110.54169 * 68.37436 * 9 8 7 12 12 N 1.65591 * 104.44947 * 179.97438 * 9 8 7 13 13 C 1.46503 * 119.99867 * 64.99944 * 12 9 8 14 14 C 1.50703 * 109.46882 * 164.99719 * 13 12 9 15 15 H 1.07995 * 120.00450 * 359.97438 * 14 13 12 16 16 C 1.37882 * 119.99653 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00128 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99725 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47243 * 90.00077 * 18 16 14 20 20 H 1.48496 * 109.47289 * 210.00058 * 18 16 14 21 21 H 1.48500 * 109.47338 * 330.00091 * 18 16 14 22 22 C 1.38159 * 120.05555 * 0.02562 * 7 6 5 23 23 H 1.08996 * 109.47352 * 299.99771 * 1 2 3 24 24 H 1.08999 * 109.47144 * 59.99795 * 1 2 3 25 25 H 1.08995 * 109.47253 * 179.97438 * 1 2 3 26 26 H 1.07997 * 120.03176 * 359.97124 * 4 3 2 27 27 H 1.07997 * 119.97739 * 180.29791 * 5 4 3 28 28 H 1.08001 * 119.94552 * 179.70178 * 6 5 4 29 29 H 1.09002 * 109.47303 * 30.02167 * 8 7 6 30 30 H 1.09000 * 109.47206 * 150.02292 * 8 7 6 31 31 H 0.96996 * 120.00509 * 244.99720 * 12 9 8 32 32 H 1.08994 * 109.47049 * 284.99662 * 13 12 9 33 33 H 1.09003 * 109.47285 * 45.00325 * 13 12 9 34 34 H 0.97002 * 119.99471 * 179.97438 * 17 16 14 35 35 H 1.08006 * 120.02917 * 180.02562 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2914 2.3753 -0.0057 5 6 1.9207 3.6048 0.0006 6 6 3.3018 3.6759 0.0002 7 6 4.0559 2.5172 0.0001 8 6 5.5607 2.5983 -0.0010 9 16 6.1633 2.6308 -1.7117 10 8 5.9338 1.3797 -2.3451 11 8 5.8006 3.8501 -2.3450 12 7 7.8106 2.7203 -1.5679 13 6 8.5551 1.6092 -0.9700 14 6 10.0214 1.7612 -1.2828 15 1 10.3644 2.6010 -1.8688 16 6 10.9251 0.8278 -0.8210 17 7 10.5074 -0.1952 -0.1079 18 14 12.7428 1.0165 -1.2081 19 1 13.3966 1.8131 -0.1388 20 1 13.3750 -0.3251 -1.2826 21 1 12.9020 1.7117 -2.5107 22 6 3.4311 1.2849 -0.0001 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 0.2128 2.3203 -0.0106 27 1 1.3339 4.5114 0.0011 28 1 3.7922 4.6381 0.0002 29 1 5.8760 3.5065 0.5126 30 1 5.9718 1.7291 0.5125 31 1 8.2826 3.5083 -1.8796 32 1 8.4115 1.6154 0.1104 33 1 8.1921 0.6665 -1.3795 34 1 11.1432 -0.8519 0.2167 35 1 4.0206 0.3800 0.0003 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000243013209.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:07 Heat of formation + Delta-G solvation = -116.166736 kcal Electronic energy + Delta-G solvation = -19968.558649 eV Core-core repulsion = 16671.910613 eV Total energy + Delta-G solvation = -3296.648036 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.087 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.17926 -38.71345 -38.15927 -37.01776 -36.46668 -34.13389 -33.82733 -31.56556 -28.76452 -28.62747 -27.82614 -24.48844 -23.65921 -22.48865 -20.41837 -19.24102 -18.89687 -17.99220 -17.48415 -17.26914 -17.12064 -16.95919 -16.65831 -16.42149 -15.49125 -15.18051 -14.85843 -14.61061 -14.35833 -14.07710 -13.81043 -13.58361 -13.56052 -13.20456 -13.08843 -12.94879 -12.75071 -12.69750 -12.53973 -12.39877 -12.09005 -11.89291 -11.77066 -11.41800 -10.85388 -10.18479 -9.83865 -9.26867 -8.25628 -6.37599 -0.83393 0.25376 0.36325 1.44565 1.46128 1.56907 1.86691 2.28879 2.41633 2.61850 2.81691 3.09136 3.23018 3.37261 3.76770 3.93059 4.07953 4.22273 4.30147 4.40489 4.42923 4.51514 4.59766 4.61503 4.73414 4.93128 5.20130 5.25834 5.30336 5.34479 5.42105 5.67844 5.73716 5.98839 6.31656 6.39121 6.76806 7.32199 8.85497 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.028505 B = 0.003836 C = 0.003569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.048023 B = 7296.651712 C = 7843.009736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.339 6.339 3 C 0.116 3.884 4 C -0.198 4.198 5 C -0.074 4.074 6 C -0.155 4.155 7 C -0.067 4.067 8 C -0.569 4.569 9 S 2.614 3.386 10 O -0.998 6.998 11 O -0.984 6.984 12 N -1.107 6.107 13 C 0.250 3.750 14 C -0.551 4.551 15 H 0.073 0.927 16 C 0.008 3.992 17 N -0.926 5.926 18 Si 0.973 3.027 19 H -0.268 1.268 20 H -0.283 1.283 21 H -0.266 1.266 22 C -0.170 4.170 23 H 0.072 0.928 24 H 0.068 0.932 25 H 0.117 0.883 26 H 0.164 0.836 27 H 0.169 0.831 28 H 0.151 0.849 29 H 0.176 0.824 30 H 0.149 0.851 31 H 0.416 0.584 32 H 0.023 0.977 33 H 0.008 0.992 34 H 0.269 0.731 35 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.462 6.822 4.085 21.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.253 6.253 3 C 0.070 3.930 4 C -0.217 4.217 5 C -0.092 4.092 6 C -0.174 4.174 7 C -0.069 4.069 8 C -0.699 4.699 9 S 2.710 3.290 10 O -0.988 6.988 11 O -0.974 6.974 12 N -0.867 5.867 13 C 0.125 3.875 14 C -0.590 4.590 15 H 0.091 0.909 16 C -0.192 4.192 17 N -0.565 5.565 18 Si 0.797 3.203 19 H -0.193 1.193 20 H -0.209 1.209 21 H -0.191 1.191 22 C -0.190 4.190 23 H 0.091 0.909 24 H 0.087 0.913 25 H 0.135 0.865 26 H 0.182 0.818 27 H 0.186 0.814 28 H 0.169 0.831 29 H 0.194 0.806 30 H 0.167 0.833 31 H 0.251 0.749 32 H 0.041 0.959 33 H 0.026 0.974 34 H 0.078 0.922 35 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -19.863 6.261 3.400 21.102 hybrid contribution 1.291 -0.109 0.440 1.368 sum -18.572 6.152 3.840 19.938 Atomic orbital electron populations 1.23416 0.75974 1.05758 1.02691 1.86081 1.23962 1.26723 1.88579 1.19094 0.91775 0.85588 0.96519 1.21708 1.01758 0.91490 1.06701 1.21405 0.93793 0.98595 0.95400 1.21461 0.95202 0.98052 1.02686 1.18880 0.91771 0.93948 1.02272 1.29496 1.01105 1.14769 1.24537 1.04657 0.73154 0.73084 0.78105 1.93525 1.85209 1.46362 1.73747 1.93504 1.83056 1.46527 1.74344 1.55348 1.24574 1.28788 1.78016 1.18777 0.92191 0.83850 0.92666 1.21631 0.92104 1.10583 1.34717 0.90925 1.25897 1.04319 0.94452 0.94552 1.70047 1.36784 1.13252 1.36417 0.85328 0.78376 0.77568 0.79016 1.19285 1.20873 1.19061 1.20572 0.93196 0.98280 1.06929 0.90924 0.91344 0.86515 0.81810 0.81386 0.83133 0.80642 0.83318 0.74908 0.95873 0.97361 0.92209 0.85741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.81 113.37 1.11 1.32 16 2 O -0.34 -8.34 10.50 -92.48 -0.97 -9.31 16 3 C 0.12 3.02 6.69 22.50 0.15 3.17 16 4 C -0.20 -3.82 9.04 22.37 0.20 -3.62 16 5 C -0.07 -1.38 10.04 22.26 0.22 -1.15 16 6 C -0.15 -3.62 9.70 22.28 0.22 -3.40 16 7 C -0.07 -1.91 5.14 -19.88 -0.10 -2.01 16 8 C -0.57 -16.45 6.20 71.24 0.44 -16.01 16 9 S 2.61 98.42 5.44 -56.49 -0.31 98.11 16 10 O -1.00 -46.34 17.50 -127.65 -2.23 -48.57 16 11 O -0.98 -38.34 18.08 -127.65 -2.31 -40.65 16 12 N -1.11 -45.42 5.88 -190.78 -1.12 -46.54 16 13 C 0.25 12.56 5.89 85.63 0.50 13.07 16 14 C -0.55 -29.81 9.27 25.60 0.24 -29.57 16 15 H 0.07 3.72 7.65 -2.91 -0.02 3.70 16 16 C 0.01 0.42 5.46 84.66 0.46 0.89 16 17 N -0.93 -53.41 13.29 21.45 0.28 -53.13 16 18 Si 0.97 42.48 29.54 68.60 2.03 44.51 16 19 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 20 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 21 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 22 C -0.17 -5.21 9.64 22.36 0.22 -4.99 16 23 H 0.07 0.69 7.67 -2.39 -0.02 0.67 16 24 H 0.07 0.72 7.65 -2.39 -0.02 0.70 16 25 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.16 1.94 6.30 -2.91 -0.02 1.92 16 27 H 0.17 1.79 8.06 -2.91 -0.02 1.77 16 28 H 0.15 2.87 8.06 -2.91 -0.02 2.85 16 29 H 0.18 3.84 8.09 -2.39 -0.02 3.82 16 30 H 0.15 4.28 8.08 -2.39 -0.02 4.26 16 31 H 0.42 15.64 8.50 -96.75 -0.82 14.82 16 32 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.01 0.47 7.70 -2.39 -0.02 0.45 16 34 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 35 H 0.12 4.04 8.06 -2.91 -0.02 4.01 16 Total: -1.00 -74.72 318.81 -0.68 -75.40 By element: Atomic # 1 Polarization: 22.20 SS G_CDS: 0.28 Total: 22.48 kcal Atomic # 6 Polarization: -45.98 SS G_CDS: 3.66 Total: -42.32 kcal Atomic # 7 Polarization: -98.83 SS G_CDS: -0.84 Total: -99.66 kcal Atomic # 8 Polarization: -93.01 SS G_CDS: -5.51 Total: -98.53 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.51 kcal Atomic # 16 Polarization: 98.42 SS G_CDS: -0.31 Total: 98.11 kcal Total: -74.72 -0.68 -75.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000243013209.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.767 kcal (2) G-P(sol) polarization free energy of solvation -74.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds