Wall clock time and date at job start Tue Mar 31 2020 05:38:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00186 * 2 1 4 4 C 1.52997 * 109.47319 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.47192 * 175.00046 * 4 3 2 6 6 O 1.45200 * 109.47292 * 295.00133 * 4 3 2 7 7 C 1.34221 * 117.00338 * 209.99591 * 6 4 3 8 8 O 1.20823 * 120.00300 * 0.02562 * 7 6 4 9 9 C 1.50703 * 120.00105 * 179.97438 * 7 6 4 10 10 C 1.53008 * 109.47115 * 180.02562 * 9 7 6 11 11 C 1.50702 * 109.47124 * 180.02562 * 10 9 7 12 12 H 1.08007 * 119.99768 * 0.02562 * 11 10 9 13 13 C 1.37874 * 119.99937 * 180.02562 * 11 10 9 14 14 N 1.31520 * 119.99958 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99988 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47506 * 89.99513 * 15 13 11 17 17 H 1.48502 * 109.47168 * 210.00101 * 15 13 11 18 18 H 1.48505 * 109.46866 * 329.99705 * 15 13 11 19 19 C 1.50705 * 109.47160 * 54.99806 * 4 3 2 20 20 N 1.29026 * 124.91243 * 105.00074 * 19 4 3 21 21 C 1.31777 * 117.12808 * 179.97438 * 20 19 4 22 22 C 1.33642 * 114.49565 * 359.97438 * 21 20 19 23 23 S 1.70968 * 124.92017 * 284.70160 * 19 4 3 24 24 H 1.08999 * 109.46857 * 59.99535 * 1 2 3 25 25 H 1.08998 * 109.46946 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46918 * 299.99649 * 1 2 3 27 27 H 1.09002 * 109.47259 * 300.00293 * 3 2 1 28 28 H 1.09001 * 109.47074 * 60.00315 * 3 2 1 29 29 H 1.09000 * 109.47432 * 300.00514 * 9 7 6 30 30 H 1.09005 * 109.46770 * 60.00645 * 9 7 6 31 31 H 1.09000 * 109.47199 * 300.00423 * 10 9 7 32 32 H 1.08997 * 109.47113 * 60.00224 * 10 9 7 33 33 H 0.96997 * 119.99523 * 180.02562 * 14 13 11 34 34 H 1.08000 * 122.75779 * 180.02562 * 21 20 19 35 35 H 1.08005 * 126.03984 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.9785 2.1765 -0.0902 6 8 3.9728 0.5694 1.2397 7 6 5.1841 0.9197 1.6998 8 8 5.8566 1.7145 1.0867 9 6 5.7049 0.3226 2.9817 10 6 7.0963 0.8858 3.2784 11 6 7.6173 0.2882 4.5600 12 1 7.0164 -0.4225 5.1079 13 6 8.8612 0.6488 5.0330 14 7 9.5931 1.5139 4.3655 15 14 9.5073 -0.0924 6.6212 16 1 10.2581 -1.3371 6.3172 17 1 10.4097 0.8792 7.2898 18 1 8.3678 -0.4086 7.5194 19 6 3.9714 0.3327 -1.1648 20 7 4.5125 0.7817 -2.2467 21 6 4.8354 -0.1026 -3.1688 22 6 4.5514 -1.3681 -2.8466 23 16 3.8274 -1.3692 -1.2403 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.6886 1.8464 -0.8900 28 1 1.6887 1.8463 0.8900 29 1 5.0298 0.5733 3.8000 30 1 5.7653 -0.7609 2.8795 31 1 7.7716 0.6355 2.4602 32 1 7.0355 1.9693 3.3807 33 1 10.4683 1.7673 4.6982 34 1 5.2929 0.1726 -4.1077 35 1 4.7365 -2.2370 -3.4607 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291461807.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:49 Heat of formation + Delta-G solvation = -110.532091 kcal Electronic energy + Delta-G solvation = -20026.836428 eV Core-core repulsion = 16730.432728 eV Total energy + Delta-G solvation = -3296.403699 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.087 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.81128 -40.54268 -39.00008 -37.62339 -35.66316 -33.54242 -32.82677 -30.33301 -28.13088 -27.32466 -26.17482 -24.67936 -23.23839 -21.64233 -21.08109 -19.50283 -18.92879 -18.19326 -17.60191 -17.47401 -17.12768 -16.59298 -16.42722 -16.35076 -15.77736 -15.20065 -15.11380 -14.51066 -14.42957 -14.24285 -13.70640 -13.33017 -13.25155 -12.85224 -12.81937 -12.49801 -12.45121 -12.29294 -12.09936 -12.00798 -11.76221 -11.48331 -11.28893 -10.74819 -10.65150 -10.57770 -10.36384 -9.90372 -8.19699 -6.33802 -0.36318 0.38881 0.83973 1.14413 1.42248 1.46431 1.48160 1.57980 1.86144 2.43468 2.66685 2.96486 3.14314 3.68639 3.76663 3.97705 4.12694 4.31547 4.35543 4.38856 4.43503 4.48715 4.53269 4.59153 4.65013 4.87746 4.93902 5.13257 5.25657 5.46388 5.53466 5.80123 6.12089 6.13398 6.66540 6.72867 6.84802 7.36729 8.93084 Molecular weight = 285.09amu Principal moments of inertia in cm(-1) A = 0.021733 B = 0.003909 C = 0.003629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.030432 B = 7161.431532 C = 7713.144409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.400 6.400 3 C 0.079 3.921 4 C 0.157 3.843 5 H 0.108 0.892 6 O -0.334 6.334 7 C 0.461 3.539 8 O -0.535 6.535 9 C -0.092 4.092 10 C 0.039 3.961 11 C -0.543 4.543 12 H 0.079 0.921 13 C -0.004 4.004 14 N -0.937 5.937 15 Si 0.975 3.025 16 H -0.272 1.272 17 H -0.286 1.286 18 H -0.254 1.254 19 C -0.006 4.006 20 N -0.494 5.494 21 C 0.013 3.987 22 C -0.260 4.260 23 S 0.207 5.793 24 H 0.051 0.949 25 H 0.098 0.902 26 H 0.054 0.946 27 H 0.092 0.908 28 H 0.090 0.910 29 H 0.122 0.878 30 H 0.116 0.884 31 H -0.014 1.014 32 H -0.009 1.009 33 H 0.264 0.736 34 H 0.198 0.802 35 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.004 -6.718 -12.126 24.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.320 6.320 3 C 0.001 3.999 4 C 0.098 3.902 5 H 0.126 0.874 6 O -0.250 6.250 7 C 0.306 3.694 8 O -0.423 6.423 9 C -0.129 4.129 10 C 0.002 3.998 11 C -0.581 4.581 12 H 0.097 0.903 13 C -0.201 4.201 14 N -0.577 5.577 15 Si 0.798 3.202 16 H -0.198 1.198 17 H -0.212 1.212 18 H -0.178 1.178 19 C -0.282 4.282 20 N -0.212 5.212 21 C -0.138 4.138 22 C -0.400 4.400 23 S 0.460 5.540 24 H 0.070 0.930 25 H 0.117 0.883 26 H 0.072 0.928 27 H 0.110 0.890 28 H 0.108 0.892 29 H 0.140 0.860 30 H 0.134 0.866 31 H 0.004 0.996 32 H 0.010 0.990 33 H 0.072 0.928 34 H 0.215 0.785 35 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -19.874 -6.746 -11.683 24.020 hybrid contribution 1.215 0.786 -0.549 1.547 sum -18.659 -5.960 -12.231 23.093 Atomic orbital electron populations 1.22950 0.78785 1.04115 1.01039 1.87925 1.21905 1.26456 1.95664 1.22603 0.86885 0.86651 1.03713 1.21246 0.95702 0.95455 0.77756 0.87402 1.86751 1.34571 1.65356 1.38356 1.24758 0.78664 0.78663 0.87356 1.90662 1.58033 1.34256 1.59376 1.21556 0.98473 1.02454 0.90446 1.18800 0.90223 0.95118 0.95698 1.21634 1.02508 1.26065 1.07877 0.90270 1.26104 0.97238 0.95354 1.01452 1.70170 1.11952 1.34290 1.41253 0.85307 0.78525 0.77885 0.78459 1.19764 1.21192 1.17786 1.27013 1.04331 0.98112 0.98758 1.66214 1.12913 1.40004 1.02039 1.22184 1.02995 0.88210 1.00452 1.27771 1.08036 1.03359 1.00796 1.84016 1.53175 1.04386 1.12388 0.93039 0.88318 0.92766 0.89035 0.89191 0.86041 0.86642 0.99566 0.99036 0.92773 0.78485 0.77047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.01 113.37 1.25 1.59 16 2 O -0.40 -8.37 9.17 -145.57 -1.33 -9.70 16 3 C 0.08 1.64 5.81 71.98 0.42 2.06 16 4 C 0.16 4.67 2.87 29.85 0.09 4.76 16 5 H 0.11 3.54 7.16 -2.39 -0.02 3.53 16 6 O -0.33 -11.13 9.69 -48.69 -0.47 -11.60 16 7 C 0.46 18.73 7.92 71.24 0.56 19.29 16 8 O -0.53 -26.04 15.20 21.97 0.33 -25.71 16 9 C -0.09 -3.76 5.75 29.85 0.17 -3.59 16 10 C 0.04 2.13 4.26 29.85 0.13 2.26 16 11 C -0.54 -30.43 9.11 25.60 0.23 -30.20 16 12 H 0.08 4.03 7.74 -2.91 -0.02 4.00 16 13 C 0.00 -0.21 5.46 84.65 0.46 0.25 16 14 N -0.94 -58.74 13.29 21.45 0.28 -58.45 16 15 Si 0.97 43.77 29.54 68.60 2.03 45.80 16 16 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 17 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 18 H -0.25 -10.58 7.11 99.48 0.71 -9.87 16 19 C -0.01 -0.19 6.11 88.52 0.54 0.35 16 20 N -0.49 -15.73 10.54 -191.45 -2.02 -17.75 16 21 C 0.01 0.32 11.35 83.66 0.95 1.27 16 22 C -0.26 -5.46 11.37 66.78 0.76 -4.70 16 23 S 0.21 5.22 21.88 -56.49 -1.24 3.98 16 24 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 25 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.12 4.32 8.14 -2.39 -0.02 4.30 16 30 H 0.12 4.23 8.14 -2.38 -0.02 4.21 16 31 H -0.01 -0.87 8.10 -2.39 -0.02 -0.89 16 32 H -0.01 -0.54 8.10 -2.39 -0.02 -0.56 16 33 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 34 H 0.20 3.66 8.06 -2.91 -0.02 3.63 16 35 H 0.21 2.71 8.06 -2.91 -0.02 2.68 16 Total: -1.00 -76.52 324.16 4.23 -72.29 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: 1.09 Total: 7.81 kcal Atomic # 6 Polarization: -12.21 SS G_CDS: 5.56 Total: -6.65 kcal Atomic # 7 Polarization: -74.47 SS G_CDS: -1.73 Total: -76.20 kcal Atomic # 8 Polarization: -45.54 SS G_CDS: -1.47 Total: -47.01 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Atomic # 16 Polarization: 5.22 SS G_CDS: -1.24 Total: 3.98 kcal Total: -76.52 4.23 -72.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291461807.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.246 kcal (2) G-P(sol) polarization free energy of solvation -76.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds